mRNA_F-serratus_M_contig1169.1380.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1169.1380.1
Unique NamemRNA_F-serratus_M_contig1169.1380.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1169.1380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1169contigF-serratus_M_contig1169:205567..206254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size690
Cds size687
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929070.8000412-CDS-F-serratus_M_contig1169:205566..2062531622929070.8000412-CDS-F-serratus_M_contig1169:205566..206253Fucus serratus maleCDSF-serratus_M_contig1169 205567..206253 +
1690962691.8312848-CDS-F-serratus_M_contig1169:205566..2062531690962691.8312848-CDS-F-serratus_M_contig1169:205566..206253Fucus serratus maleCDSF-serratus_M_contig1169 205567..206253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1169.1380.1prot_F-serratus_M_contig1169.1380.1Fucus serratus malepolypeptideF-serratus_M_contig1169 205567..206253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1169.1380.1

>prot_F-serratus_M_contig1169.1380.1 ID=prot_F-serratus_M_contig1169.1380.1|Name=mRNA_F-serratus_M_contig1169.1380.1|organism=Fucus serratus male|type=polypeptide|length=229bp
EEGSVAGESVRPTWYSKGGRVRETEEGSVAGESVRPSWYSDVGSELSLPR
YSCNSTLTGSVAPRWPGETNSVVADSEGNEWNAETRSMAAESVRPSWIEE
TTSEFGQSNRMDYRDRWMDNDTEIPRTSVPLKDTKMSKARSLDAQAPVVT
VRVKTSREDGLRPSKSSIRTSTTYTKHSLFGSGKYEKRSDGGRSDNEASD
VGRGKGRTSTTNAKHSLFGSGKHEKRSDG
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mRNA from alignment at F-serratus_M_contig1169:205567..206254+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1169.1380.1 ID=mRNA_F-serratus_M_contig1169.1380.1|Name=mRNA_F-serratus_M_contig1169.1380.1|organism=Fucus serratus male|type=mRNA|length=688bp|location=Sequence derived from alignment at F-serratus_M_contig1169:205567..206254+ (Fucus serratus male)
GAAGAAGGATCGGTCGCCGGAGAATCAGTACGACCAACCTGGTACTCTAA
AGGAGGGAGGGTGAGAGAAACAGAAGAAGGATCGGTCGCCGGAGAATCAG
TACGGCCATCCTGGTACTCTGATGTCGGGTCCGAACTGTCGTTACCGCGG
TATTCCTGCAACTCAACGCTTACCGGGTCGGTGGCACCCAGGTGGCCGGG
AGAAACTAACTCCGTTGTCGCGGATTCGGAGGGGAACGAATGGAATGCGG
AGACCCGATCGATGGCCGCGGAGTCAGTACGCCCTAGCTGGATAGAGGAG
ACTACGTCGGAGTTTGGGCAATCCAATCGAATGGATTATCGCGACCGTTG
GATGGACAACGATACGGAGATCCCAAGGACATCTGTCCCCTTGAAAGACA
CGAAAATGTCAAAGGCAAGGTCTTTAGACGCACAAGCACCAGTGGTAACA
GTAAGGGTAAAGACTTCGAGGGAAGATGGATTGAGGCCATCTAAATCATC
CATTCGTACCAGCACTACCTACACTAAACATTCCTTGTTTGGAAGTGGGA
AGTACGAGAAACGGTCAGACGGTGGACGCTCTGACAATGAAGCCTCTGAT
GTTGGGCGTGGTAAAGGTCGTACCAGCACTACCAACGCTAAACATTCCTT
GTTTGGAAGTGGGAAGCACGAGAAACGGTCAGACGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1169:205567..206254+

>mRNA_F-serratus_M_contig1169.1380.1 ID=mRNA_F-serratus_M_contig1169.1380.1|Name=mRNA_F-serratus_M_contig1169.1380.1|organism=Fucus serratus male|type=CDS|length=1374bp|location=Sequence derived from alignment at F-serratus_M_contig1169:205567..206254+ (Fucus serratus male)
GAAGAAGGATCGGTCGCCGGAGAATCAGTACGACCAACCTGGTACTCTAA
AGGAGGGAGGGTGAGAGAAACAGAAGAAGGATCGGTCGCCGGAGAATCAG
TACGGCCATCCTGGTACTCTGATGTCGGGTCCGAACTGTCGTTACCGCGG
TATTCCTGCAACTCAACGCTTACCGGGTCGGTGGCACCCAGGTGGCCGGG
AGAAACTAACTCCGTTGTCGCGGATTCGGAGGGGAACGAATGGAATGCGG
AGACCCGATCGATGGCCGCGGAGTCAGTACGCCCTAGCTGGATAGAGGAG
ACTACGTCGGAGTTTGGGCAATCCAATCGAATGGATTATCGCGACCGTTG
GATGGACAACGATACGGAGATCCCAAGGACATCTGTCCCCTTGAAAGACA
CGAAAATGTCAAAGGCAAGGTCTTTAGACGCACAAGCACCAGTGGTAACA
GTAAGGGTAAAGACTTCGAGGGAAGATGGATTGAGGCCATCTAAATCATC
CATTCGTACCAGCACTACCTACACTAAACATTCCTTGTTTGGAAGTGGGA
AGTACGAGAAACGGTCAGACGGTGGACGCTCTGACAATGAAGCCTCTGAT
GTTGGGCGTGGTAAAGGTCGTACCAGCACTACCAACGCTAAACATTCCTT
GTTTGGAAGTGGGAAGCACGAGAAACGGTCAGACGGTGAAGAAGGATCGG
TCGCCGGAGAATCAGTACGACCAACCTGGTACTCTAAAGGAGGGAGGGTG
AGAGAAACAGAAGAAGGATCGGTCGCCGGAGAATCAGTACGGCCATCCTG
GTACTCTGATGTCGGGTCCGAACTGTCGTTACCGCGGTATTCCTGCAACT
CAACGCTTACCGGGTCGGTGGCACCCAGGTGGCCGGGAGAAACTAACTCC
GTTGTCGCGGATTCGGAGGGGAACGAATGGAATGCGGAGACCCGATCGAT
GGCCGCGGAGTCAGTACGCCCTAGCTGGATAGAGGAGACTACGTCGGAGT
TTGGGCAATCCAATCGAATGGATTATCGCGACCGTTGGATGGACAACGAT
ACGGAGATCCCAAGGACATCTGTCCCCTTGAAAGACACGAAAATGTCAAA
GGCAAGGTCTTTAGACGCACAAGCACCAGTGGTAACAGTAAGGGTAAAGA
CTTCGAGGGAAGATGGATTGAGGCCATCTAAATCATCCATTCGTACCAGC
ACTACCTACACTAAACATTCCTTGTTTGGAAGTGGGAAGTACGAGAAACG
GTCAGACGGTGGACGCTCTGACAATGAAGCCTCTGATGTTGGGCGTGGTA
AAGGTCGTACCAGCACTACCAACGCTAAACATTCCTTGTTTGGAAGTGGG
AAGCACGAGAAACGGTCAGACGGT
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