mRNA_F-serratus_M_contig1166.1362.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1166.1362.1
Unique NamemRNA_F-serratus_M_contig1166.1362.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1166.1362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1166contigF-serratus_M_contig1166:224949..232503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2895
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1166.1362.1prot_F-serratus_M_contig1166.1362.1Fucus serratus malepolypeptideF-serratus_M_contig1166 227137..232207 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.0037334-UTR-F-serratus_M_contig1166:224948..2271361622929068.0037334-UTR-F-serratus_M_contig1166:224948..227136Fucus serratus maleUTRF-serratus_M_contig1166 224949..227136 -
1690962690.6578405-UTR-F-serratus_M_contig1166:224948..2271361690962690.6578405-UTR-F-serratus_M_contig1166:224948..227136Fucus serratus maleUTRF-serratus_M_contig1166 224949..227136 -
1622929068.0531929-UTR-F-serratus_M_contig1166:232207..2325031622929068.0531929-UTR-F-serratus_M_contig1166:232207..232503Fucus serratus maleUTRF-serratus_M_contig1166 232208..232503 -
1690962690.6979163-UTR-F-serratus_M_contig1166:232207..2325031690962690.6979163-UTR-F-serratus_M_contig1166:232207..232503Fucus serratus maleUTRF-serratus_M_contig1166 232208..232503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929068.0144243-CDS-F-serratus_M_contig1166:227136..2271991622929068.0144243-CDS-F-serratus_M_contig1166:227136..227199Fucus serratus maleCDSF-serratus_M_contig1166 227137..227199 -
1690962690.6689713-CDS-F-serratus_M_contig1166:227136..2271991690962690.6689713-CDS-F-serratus_M_contig1166:227136..227199Fucus serratus maleCDSF-serratus_M_contig1166 227137..227199 -
1622929068.0260978-CDS-F-serratus_M_contig1166:231252..2314531622929068.0260978-CDS-F-serratus_M_contig1166:231252..231453Fucus serratus maleCDSF-serratus_M_contig1166 231253..231453 -
1690962690.6782038-CDS-F-serratus_M_contig1166:231252..2314531690962690.6782038-CDS-F-serratus_M_contig1166:231252..231453Fucus serratus maleCDSF-serratus_M_contig1166 231253..231453 -
1622929068.040326-CDS-F-serratus_M_contig1166:232060..2322071622929068.040326-CDS-F-serratus_M_contig1166:232060..232207Fucus serratus maleCDSF-serratus_M_contig1166 232061..232207 -
1690962690.6868503-CDS-F-serratus_M_contig1166:232060..2322071690962690.6868503-CDS-F-serratus_M_contig1166:232060..232207Fucus serratus maleCDSF-serratus_M_contig1166 232061..232207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1166.1362.1

>prot_F-serratus_M_contig1166.1362.1 ID=prot_F-serratus_M_contig1166.1362.1|Name=mRNA_F-serratus_M_contig1166.1362.1|organism=Fucus serratus male|type=polypeptide|length=137bp
MEQSAQAQRAQRSSSWTCDSIMISYASWRGTNRCRRCKGYMAHRELRFGM
IFKSHSQQHHLYQGFHLSCSPPPASLTCPDELEGIQDISPEDVEIINTWI
HSGAAPPAFCSLSGSKEGFPAHASGQSQGLVQSSLT*
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mRNA from alignment at F-serratus_M_contig1166:224949..232503-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1166.1362.1 ID=mRNA_F-serratus_M_contig1166.1362.1|Name=mRNA_F-serratus_M_contig1166.1362.1|organism=Fucus serratus male|type=mRNA|length=7555bp|location=Sequence derived from alignment at F-serratus_M_contig1166:224949..232503- (Fucus serratus male)
AACCGACAGAAAGACCAATCCTCAATCCTCCAATCCTACTACTGCTGTAT
CTCAAACCTGCCACACCCCCTTCACCTGTCCAGTTTCTCGCTTTCTCCAT
TTCTCCCTTCCACCGACCTCTTGAGCTTGAGCTTGAGCTTGAGCTTGACC
GATCGACTTGGTGGGAAAGACCTCGCTATCTGACGCCCTAATAATTGAGT
CGAGATTTTTTGGTGAGGGAGGGTTTAGCTCTCGAGTGACTTACGGCAAC
ATACCGCTTTTATCCGTCAACCACCTGGTGGTTCGTAGCTGTCGACATGG
AACAAAGTGCTCAGGCTCAGCGAGCTCAACGGAGCTCGAGCTGGACATGC
GATAGCATCATGATTTCGTACGCATCGTGGAGAGGCACCAACCGCTGCAG
ACGTTGCAAGGGGTACATGGCTCACAGGGAGCTGCGTTTCGGGGTGAGCC
TGCTCTTTTTGTTTTAAGTCGATCATTCCGCATCTCGAGGCCTCTATGCA
CGTATACCCTCGGTGCGCATGCGACTCTTGTTTTAAAAAATTCACGTTTT
TCGACCTTCACCCGGCAAAGCTTAAAGCAGTTGGCGCGCACGCATCCGAT
AAGGCGAAACCCGCAGTCTGTCAGCAGGATAGCTTGTTTGGTTCAGAAAA
AAGGAGCTACCTTCTTCAGATTTTCAACACCATGGGAGGTCGATACCGAT
ACTTTTTGTGACGTTATACAGCAGTAGTATTCGTAGGTCTAGTAGATACT
CTCCGGCATATACCTTTATTTACTAACTGTATCGATAATAGGTACAGTAG
TTGTACAGTAGTGGTACAGTAGTGGTACAGTACAAAACTGAACTTTTACG
ATACCAGGTACTCGTTGCTCATTTCCCCTCAAAATCGCAGATGTGAAACA
ACTTTACACAGACAGTGACTTTGTATAGTCACGCATGGACTCTCGAGTAG
AGGATACATTCGAGGCGCCCGTCCCCTCCGCTCACGATTGCAACACGTTC
CCTTCACCTCCCCCTCGCATCCGACCTTTTTCGTTCGGAATGCGTTGCAG
ATGATCTTCAAGTCTCACAGCCAGCAGCATCATCTGTATCAAGGGTTTCA
TCTGAGCTGCAGCCCCCCCCCAGCCTCGCTGACTTGCCCGGACGAACTCG
AGGGGATACAAGACATTTCTCCCGAAGACGTCGAGATCATAAACACGTGG
ATACACTCCGGCGCGGCGCCCCCGGCATTCTGCTCTCTCTCTGGGTCGAA
GGTGACTCACCACTATCAATATCAATGGCTCTAGTCTGGTGACGATCCAG
TTTTTTCTTAATGTGGTTTTGTTGCTGAAAAGTACTGTATAGAGAACTAG
CTGAGCTCTCTGTTGGCGTCGAACATTCAGAAAAACTCTCGAATCTACAG
GCGCGGCTGGGTGGGTTATTTTTACGCCAAGTTATTTATTTTTAGTGTTC
AGCAGTCTACTACTGCTGTACGCAGGCAAGCAACCACAACTATAATGTAC
TTGGAAGGTACCTGGTAATTTCTTCTGCTTGACCTATCGAGACATTTTCG
GTACACAAGCAAGCAACCACAGGTATCATTTACTTGGGAAGGTACCTGCT
AATTTTTTCCCATGTTTTAATTCTTGTCGATACCGGAGATTGAATCCGCG
ACGTATCCTTATTTCGAAGGGCTAAACTGTTAGACTACTCAATCGTATAA
CTCAGTAGGCTAATGGTTTGGCCAATAACAAACACATATGATAGCACGGA
GAGGTTGAATTTGCAGTGTTATACCTGCTGTAATTTGAGCAGGGTCCTCC
ACCTTTGCAGTACAGTATAGACTAATGCCTACAGTACAGACTTAATACAA
ACAGTAGTACTGCTGTAAGACCAGGGGTACAGTTCATAAAAATTTATGTC
AGACATCTTCCACGCTCCTCGAAGTCTACCCAGGGACCCCGTTCAAGTGT
TCCTCGAAGCTTAGCAATGCGCCGTCCCTCTGTCTTCCTCAAGATGATGG
CAGTCTGTACCTGACCTCGTGCGTACATCATCGTTCATGTAATAAATAGT
ATAGTTTGTATTCCCGGTTTGATTTGGTTTGGTTCCGTCTATCTTGTGAC
CACGGCTGGATTCGTAGCGGATCAGTTAATGTGAGATAAACAGTAACAAA
TACTGGTAAGGTATAGGCGTGTTCTGATTTTTCTTTGAACAACATCAGAA
GGTCTAGGCATATTTTTATTTAAACACACGTCGTTACTTTCAACATGCCC
ACTTCATACCATTAGACTAGTGGGTGTGGGAAAGAGAGACGCATATTATT
TGGTCCATGATGACCTCTGCCAAGGCATCACCCGTTTGGAACTACCTTGA
GGTTTACTGGCCCCGTGCCGGCGGACTCTCGGCAGTGAACGTCATCGGAA
CGCAATTGTGTGATACGATAAACTCGGGACTGACCCGTCGGCGTACGGCG
GCTAAAACAAATAAATAGACGCCGCCGCGGAACTCGGGAGGAATCCCGTA
AATAAGCACCAGATTCAGCCTGAGCACGGAAATGAGCAGGCTGACGCGGG
ACGGGACTGCCGAAACCGTCTCGCGAGACCATATTCTCAGGCGCGAACGG
GGATAGGGGAAAAATACGGCTGGCCACGAGAAGGATTGGCAACCTTACCC
TGTTGATCCTTACTCTTGCTATATGTGATGGCCATCGCCATACACAAATA
CATTATACTTGTAACTCTCAGATTCTGAAAAATTCACCGTATTTCAGATC
CAGCAGAAGCTGTAGTTTGTACCCAAAGACATGTCATTGATGACATAATC
TTGACCTTTTATAAGTTCCCTGCGTTCTCGATGTCGTGGAGTATGTTCTC
GAGTGGTTCGGCCTATAATAGCAAGGATGATTATGATTTTGTCGCGATTT
GGATTTGGATTTGGATCCCTGATGGTTTGAGTAGCGGATTGTCGCCATTA
TGTAACCGTTTGACATTCGTACCTCTTTGTAACCATTTGTAACCATTGAC
AACTGCGTGTATATATGGTTGAGGCCCGATCGCTCAATCAATGTGAAGGA
ACCCACGTGTTACACGACATGTAATTTAATAAATACACACGCACACACAC
GCACGCACTATTGTTCCTGGAGTATGTACATAATAGTCCTTATGGTTAGA
GCTCTAGTACTCGAATTACGGTGTATGTAATTGCTCTTTATTGCCCTCAA
GTATACTCTGTTTTCAGCGTACAAGTATCTGAGATTCTGCTGCTTGTAGC
CCTTGTCGACCGATAAATAGCCCTTGACCCTCCGCTATACCAGCTTCTCC
GTTTGCCACTTCGATGAGGCCTTCCACGAAAGACAAGCTGTTCTCGTACA
CCATACACCGACTGCTGCTGTGTCCGTCGCGGCTGTGTGCGCACGAGATT
GCGGCACATTATTCGACGAACTTGTCCAGCAATCGCAACTATATTAATAC
ATGAATTATGTTCATCGACTCCAAGTAGCGGCAGTCGTTGTTGCCAATTT
TCTCAGCATGTCTAGACGCTGCAGTATCTACCTGAGGCCTATTCCGTCTT
GTACCGTGTTTACCGTGTTGTTGGCTTACTGCTCGACTCGACTCTACTCC
GTACTTACAACATATACATAAAATATGATCAAAGAATACTGTCTCACACG
TCGCACAGCAGCACAGTAACTAAAACACACGGATATGTGATAGACGGATA
GGTGATACCTGGTAGGTTCCAAAGAGACGACGTGCAAGCCCTACATCATT
TGCTTTTTATGTGGTGTCCCTGCATGGCGATTAATATAAAGTGTACAGTA
TAACGGTGGGCTTCTCCCCAGTATTGTACTGTTGACCCAATGTTACTACC
ATCGGGAAACCGGTTTAAATACCATTAAGAGGTTTTGTCTTTGCAGCCTA
TGATCCCACCTAAACGTTTGACATTTTTCCCCCTGACTGGGGTATAGTAT
GCTCAAAAAGTACGCGTCCATATTTTTCTTTAAATACAGCAGTCATATCT
TCAACGACGGCTCTTGAAGTTGATCTATTGAATGTATCGCCGGTACTTTC
AACATGCCCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGACTAT
TAATTGGTCCATGGTGATCTGCCAAGGCAGCACTCGTTCGGAACTACCTT
GAGGTTTACTGGCCCTATGCCGGCGAACTCTCGGCAGTGAACGCCATCGG
TACGCAATTGCGTGACCCGATATACTCGGGACTCATCCGACGGCGTATGA
CGGTCATAAAACAATGAATAAATGGACGCCGCCGCGGAACTCGGGAGGAA
TCCCGTATGTAAGCACCAGATTCAGCCTGAGTATGGAGATGATCAGGCTG
ACGCGGGACGGGACTGCCGAAACCGTCTCGCGTGACCAAATTCTCAGGCA
CGAACGGGGATAGATAAATATTCATTTTCCCTGTTCAGCTGACCACGAGC
AGGACTGGCAACATTACCCGGTTGATCCATACTCTTGCTACAGTATATGT
GTGACCATACATGTATTGATACATAAGATGACGTCGAATGAAACCCAAAT
ACTGTAAACCGATTCGCCTTTACTTGAAGTGGAATTATAATCACAGGGAG
GGGTGTGCTGGCGCATTGAAGTCGAACGGCAGCATAAACAATGTGGCCCT
GGTCATGTATCGTCATCGCTTACAGCAGAGTATGGTTAAACCCAATCGAC
CGACACGACACCATAAATGCATGGTCACACACATAGCAAGGGTATGGATC
AACCCGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAAC
AATATTCCACTGTCCGCGTTCGTGCCTGAGAATTTGGTCTCGCAAGACGG
TTTCGGCAGTCCCGTCCCGCGTCAGCCTGCTTATCTCCACACTCAGGCTG
AATCTGGTGCTTACCTACGGATTCCTCCCGAGTTCCGCGGCGGCGTCCAT
TTATTTATATTAAACCGCCATACGCCATCGGCTAAGTCCCAAATTTATCG
GGTCACGCAATTGCGTACCGATGGCGTCCACTGCCGAGAGTCCGCGGCAC
AGGGCCAGTAAACCTCAAGGTAGTTCCGAACGGGTGCTGCCACTTAGCAG
ATCACCATGGACCAATTAATATACGCATCTCTTTCCCAAATCCACTATTA
ATAGTCTATTGGTATGGAGTGAGCATATTGAAAGTAACGGCGATATACAT
GTCAACGAATCGACTCTTACTTATCTTGTTCATTCTGCCGTGCTGTCTTT
ACTTGGTCGCTGCACGTGTCTGTTGTCTGTTGCGAATCTCTTTCGAACTT
TTAGGAGGGATTCCCAGCACACGCTTCGGGCCAAAGTCAGGGTTTGGTAC
AGTCGTCGCTGACATGACACTTGGACTACCACTACCTCTGCCAGACCTTG
ACGAGATCAGAGATGAAACGGCTTCAAGATATTAGTAGTGAGTAAACAGC
AGAAACACAGAACTGTTAACTTATGTTAACTGCTTTCTGTCTGTTCTATG
CCTCGCATCGCACTCGTGCCGGGGGGGCGGGGGCGTCGAGGATCGAGGAT
TGGCGATTGATGATAGATGACGTTATCGATTATTTTTGAAGTATATTTAC
GAAACCTTGCTGCGGGTGTGTTTTCCCAGTAGGCTGTTGAGTCGATCACA
ATGGATCTAATGGCAACTTCTGGGTACTGCTGTAGTCAGAAGCTCTATCC
ATCGAAGACCTACAAGTATCGTATCGTTACAGTAGCTCTATGCATGTTGT
GAAAGTATGATGGTACTGCTTGTACCTCGGGTAAAGGGATGTCCTGTGGT
GTTGAAAAAAGTGGCATGTTTTTTGTCCGTCTGGCAGGAAAACTTTCCAC
CAAACTAACGGCAATTTTGCCACTATACTAGTTCTCTTTTGTGTGAGAGG
TATTCTACCGTACTGTATGTAGCCTTGTCCTCCTAAAGGTTGTTTTTTAT
GGTCTGGTCGTTGACCTCGCTACTACCTCGACCGTTATCGAACAACAAAG
TGTGTAAAACACTTGTGTATGTAAAAGTAAAGTACGTTTCTGCTCAAAAG
GTCGTCCATGTTTTTAATGCACAAGCTACAGTAGCAATAGACCTACAGTA
ACTACTAGTGGTACAGTACTAGGCGATGGCGTGGAAGCATTCAATAGATC
GACGAATGAATCCTCGAAAGCTTCATCACGTGGGATCACTCGTGGCATGA
GGAGGAGGAACACGTACAGTATCAATCCTAGTTCTAGTATCATGTTTGGG
AAGGGGAAAGGAAGGGGAGCAATACCAGCGATGACGATCCGTTATAGTGA
TGAATGAATCTAGCACGTACGTGCACGCACACGCTGAGGTCCAAGGCGCG
CGCGACCCTGACAAGACCGAGTGTCTTGTTTTGGCCCGGGTTAGGTTCAG
GTGATAGTTGCATGTTATGTCTACGCGACATGAATCGACGCGTGCGTTCA
CGAGGGTGATGGATGTACTGTATATGATTCCGTGTTGATGTTTTTGTAGT
GTTTCCGGCAAGGCTTGATCGTGGCTAACCGGGCACTCCGCCGGCTGGTG
TAGTTTTGTGTTGAATAATACCGGTATATCGCACCAGCAGGCCATCGATT
GATTTCTGTGGTCTGTGGAGCGCGTCAATGAGAAGCTCAAGCTGTGAAGA
ATGACGTATGGTATCTGTGACATTTTCTTTTTGAAGAGTCTGCAACGGAT
TTAAGGCTGAAGTGACCAACCAGGGTGTCTTCCTTCTTCCCCTGGGCCTG
ACTGATTCACGTACCTGGTAGATATTTTAGTGCATACATACATACAGTAG
TACAGTACAGTACAGTAGTACAGTACAAGGGAAAGGGAAAGGGGAACTAC
TATGATACAGTGAACCACTGTAATCGTTTAAAAGTCCCCTCCGGAAGGAA
TGATTTTGATTTTTTCGCTGGGAAAGAGGAAGCGGAAGGGGTCAAGAGGT
CTGCTGTTGATGTTGCTGTTATTGTCTTAACTCGTCTAGAGTAATATACT
ATTCTTCTATTGCTGGTCGAACCACCCGCGAGCGGTGTGAGCATTTGATG
CAGGCTGACGGTGTGAACCCGCCAGTACTGAGTGCGGAACAGGTACAACA
GGTTGCAGTAGTAGATACCTGTTACTGCAGACTATAATAATGCAGTAGAC
TATGGTACAGAGGATGGTATAATATGATGTATATATAAAAAATTGAGATT
GAGATTGGGTGAGGTCGGTCGTTTTACCGAATTTTGTGGTGCGCACTCGA
GGCGAGCGAGGTCTCCGGAATTTTCATGGTTCCAATTAAGACGCTACAAT
AGAACGACTGGGGCTAATGACCACTTATTATGACCTGCAATTAAGACAGG
ATTGAAACACGACTAACGTCAACGCAAAATTGATTAGGTGGGGAGGGCAC
GGGCGCTCTCGATGCCCTTGCGTTTGTCGAGTTTCGAGAGACCTCTGTAA
TCATTTGACATTGATTTGAGTCGACTGTAATTTACTGTAACATTACAAAA
AAGGCGATTTTGCTGCATCAAATTATTATCTAATACTCCATGGAACGTCT
TGAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1166:224949..232503-

>mRNA_F-serratus_M_contig1166.1362.1 ID=mRNA_F-serratus_M_contig1166.1362.1|Name=mRNA_F-serratus_M_contig1166.1362.1|organism=Fucus serratus male|type=CDS|length=822bp|location=Sequence derived from alignment at F-serratus_M_contig1166:224949..232503- (Fucus serratus male)
ATGGAACAAAGTGCTCAGGCTCAGCGAGCTCAACGGAGCTCGAGCTGGAC
ATGCGATAGCATCATGATTTCGTACGCATCGTGGAGAGGCACCAACCGCT
GCAGACGTTGCAAGGGGTACATGGCTCACAGGGAGCTGCGTTTCGGGATG
GAACAAAGTGCTCAGGCTCAGCGAGCTCAACGGAGCTCGAGCTGGACATG
CGATAGCATCATGATTTCGTACGCATCGTGGAGAGGCACCAACCGCTGCA
GACGTTGCAAGGGGTACATGGCTCACAGGGAGCTGCGTTTCGGGATGATC
TTCAAGTCTCACAGCCAGCAGCATCATCTGTATCAAGGGTTTCATCTGAG
CTGCAGCCCCCCCCCAGCCTCGCTGACTTGCCCGGACGAACTCGAGGGGA
TACAAGACATTTCTCCCGAAGACGTCGAGATCATAAACACGTGGATACAC
TCCGGCGCGGCGCCCCCGGCATTCTGCTCTCTCTCTGGGTCGAAGATGAT
CTTCAAGTCTCACAGCCAGCAGCATCATCTGTATCAAGGGTTTCATCTGA
GCTGCAGCCCCCCCCCAGCCTCGCTGACTTGCCCGGACGAACTCGAGGGG
ATACAAGACATTTCTCCCGAAGACGTCGAGATCATAAACACGTGGATACA
CTCCGGCGCGGCGCCCCCGGCATTCTGCTCTCTCTCTGGGTCGAAGGAGG
GATTCCCAGCACACGCTTCGGGCCAAAGTCAGGGTTTGGTACAGTCGTCG
CTGACATGAGAGGGATTCCCAGCACACGCTTCGGGCCAAAGTCAGGGTTT
GGTACAGTCGTCGCTGACATGA
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