mRNA_F-serratus_M_contig1166.1357.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1166.1357.1
Unique NamemRNA_F-serratus_M_contig1166.1357.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1166.1357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1166contigF-serratus_M_contig1166:19203..19825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size256
Cds size252
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1166.1357.1prot_F-serratus_M_contig1166.1357.1Fucus serratus malepolypeptideF-serratus_M_contig1166 19205..19825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929066.9469266-CDS-F-serratus_M_contig1166:19204..193741622929066.9469266-CDS-F-serratus_M_contig1166:19204..19374Fucus serratus maleCDSF-serratus_M_contig1166 19205..19374 -
1690962690.1601658-CDS-F-serratus_M_contig1166:19204..193741690962690.1601658-CDS-F-serratus_M_contig1166:19204..19374Fucus serratus maleCDSF-serratus_M_contig1166 19205..19374 -
1622929066.963275-CDS-F-serratus_M_contig1166:19540..195811622929066.963275-CDS-F-serratus_M_contig1166:19540..19581Fucus serratus maleCDSF-serratus_M_contig1166 19541..19581 -
1690962690.1722572-CDS-F-serratus_M_contig1166:19540..195811690962690.1722572-CDS-F-serratus_M_contig1166:19540..19581Fucus serratus maleCDSF-serratus_M_contig1166 19541..19581 -
1622929066.974129-CDS-F-serratus_M_contig1166:19784..198251622929066.974129-CDS-F-serratus_M_contig1166:19784..19825Fucus serratus maleCDSF-serratus_M_contig1166 19785..19825 -
1690962690.1799781-CDS-F-serratus_M_contig1166:19784..198251690962690.1799781-CDS-F-serratus_M_contig1166:19784..19825Fucus serratus maleCDSF-serratus_M_contig1166 19785..19825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1166.1357.1

>prot_F-serratus_M_contig1166.1357.1 ID=prot_F-serratus_M_contig1166.1357.1|Name=mRNA_F-serratus_M_contig1166.1357.1|organism=Fucus serratus male|type=polypeptide|length=84bp
PSRRKKLPRPWGQMMDPEPGELEPSPADVLQLKDNELANKENKKFDSGGK
RWGTGLKSGCTGAHFFMGELWAWMPGLFLVLLLA
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mRNA from alignment at F-serratus_M_contig1166:19203..19825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1166.1357.1 ID=mRNA_F-serratus_M_contig1166.1357.1|Name=mRNA_F-serratus_M_contig1166.1357.1|organism=Fucus serratus male|type=mRNA|length=623bp|location=Sequence derived from alignment at F-serratus_M_contig1166:19203..19825- (Fucus serratus male)
CCCTCACGCCGGAAGAAACTACCGCGACCTTGGGGGCAGATGTGAGCGCG
TTGAAGAAGAAAATCTCGATGGATGAATAATTCGTCAGGCTCGAACATAT
GATCATGAAGAGGAGAGGCCGCACTGTGGCGCATGCAATTATTGCGCAAA
TTGGTACAGGCCAACCCTCTAATCCCCGATCGCGCTATTCAGCAATAATA
TCGTGCGATGTACGTGTTTGTATGAATGAAAACACCGACGGCAGGATGGA
CCCTGAGCCAGGAGAGCTCGAACCATCACCGGCTGGTAAGGGTTTTTAAA
CACTCGGACAGCAGTGTCTTTCGAACTGGGAGATGGAACAAGCCACTGTC
GACGGATGCTTGCTTTTTCCCTGGAAGAACTCGTTTTCGGGACATAAACC
AATAACCACGCGTCAACATCGTTTGCCTCATCAAAAACCGTTTTCCTGCA
GATGTGCTGCAACTCAAAGACAATGAGCTAGCCAACAAAGAAAACAAGAA
GTTTGATTCTGGTGGAAAGAGGTGGGGCACCGGTTTGAAAAGCGGATGTA
CTGGTGCCCATTTTTTTATGGGGGAACTATGGGCCTGGATGCCCGGCTTG
TTTCTTGTGCTTTTGCTTGCCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1166:19203..19825-

>mRNA_F-serratus_M_contig1166.1357.1 ID=mRNA_F-serratus_M_contig1166.1357.1|Name=mRNA_F-serratus_M_contig1166.1357.1|organism=Fucus serratus male|type=CDS|length=504bp|location=Sequence derived from alignment at F-serratus_M_contig1166:19203..19825- (Fucus serratus male)
CCCTCACGCCGGAAGAAACTACCGCGACCTTGGGGGCAGATCCCTCACGC
CGGAAGAAACTACCGCGACCTTGGGGGCAGATGATGGACCCTGAGCCAGG
AGAGCTCGAACCATCACCGGCTGGATGGACCCTGAGCCAGGAGAGCTCGA
ACCATCACCGGCTGATGTGCTGCAACTCAAAGACAATGAGCTAGCCAACA
AAGAAAACAAGAAGTTTGATTCTGGTGGAAAGAGGTGGGGCACCGGTTTG
AAAAGCGGATGTACTGGTGCCCATTTTTTTATGGGGGAACTATGGGCCTG
GATGCCCGGCTTGTTTCTTGTGCTTTTGCTTGCCATGTGCTGCAACTCAA
AGACAATGAGCTAGCCAACAAAGAAAACAAGAAGTTTGATTCTGGTGGAA
AGAGGTGGGGCACCGGTTTGAAAAGCGGATGTACTGGTGCCCATTTTTTT
ATGGGGGAACTATGGGCCTGGATGCCCGGCTTGTTTCTTGTGCTTTTGCT
TGCC
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