mRNA_F-serratus_M_contig1163.1350.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1163.1350.1
Unique NamemRNA_F-serratus_M_contig1163.1350.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1163.1350.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 3.130e-55
Identity = 93/158 (58.86%), Postives = 119/158 (75.32%), Query Frame = 1 
Query:    1 FLAQGRQCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQARVCAYKERSTNEWNVTEAVLDHVQCTGQSGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRDNGNIVECE 474
             ++Q RQCRLDKRVSGG GK+ RC+GAII    K  +GC  R    K+ +   W VTE VLDHV CTGQ+G+K++R  RR VE EAA L++ANH +T P+LVKTLKAT+GV++SER+A+R+R+D+LGKG+ A A  YQLL S    +GRDNGNIVEC+
Sbjct:    1 MISQSRQCRLDKRVSGGRGKLHRCTGAIING--KATSGCPVRARGCKQ-TDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDNGNIVECQ 155
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BLAST of mRNA_F-serratus_M_contig1163.1350.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 4.030e-53
Identity = 92/160 (57.50%), Postives = 117/160 (73.12%), Query Frame = 1 
Query:    1 FLAQGRQCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQ--ARVCAYKERSTNEWNVTEAVLDHVQCTGQSGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRDNGNIVECE 474
             ++  RQCRLDKRVSGG GK+ RC+GA+I    K  +GC   AR C   + +   W VTE VLDHV CTGQ+G+K++R  RR VEEEAA L+++N  +T PAL KTLKAT+GV+ISERTA R+R+D+LGKG+   A  YQLL SY   +GRDNGN+VEC+
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGT---WKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
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BLAST of mRNA_F-serratus_M_contig1163.1350.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 8.550e-52
Identity = 92/157 (58.60%), Postives = 115/157 (73.25%), Query Frame = 1 
Query:    1 FLAQGRQCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQARVCAYKERSTNEWNVTEAVLDHVQCTGQSGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRDNGNIVEC 471
             ++Q RQCRLDKR SGG  K+ RC+GAII    K  +GC  R    K+ +   W VTEAVLDHV CTGQ+G+K++   RR VE++AA L++ANH +T P+LVKTLKAT+GV+ISERTA R+R D+LGKG  A A  YQLL +Y   +GRDNGNIVEC
Sbjct:    1 MISQSRQCRLDKRDSGGRSKLHRCTGAIING--KATSGCPVRARGCKQ-TDGTWKVTEAVLDHVACTGQAGNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGNIVEC 154
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BLAST of mRNA_F-serratus_M_contig1163.1350.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 3.540e-49
Identity = 92/160 (57.50%), Postives = 117/160 (73.12%), Query Frame = 1 
Query:    1 FLAQGRQCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQ--ARVCAYKERSTNEWNVTEAVLDHVQCTGQSGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRDNGNIVECE 474
             ++  RQCRLDKRVSGG GK+ RC+GA+I    K  +GC   AR C   + +   W VTE VLDHV CTGQ+G+K++R  RR VEEEAA L+++N  +T PAL KTLKAT+GV+ISERTA R+R+D+LGKG+   A  YQLL SY   +GRDNGN+VEC+
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGT---WKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
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BLAST of mRNA_F-serratus_M_contig1163.1350.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.850e-49
Identity = 88/154 (57.14%), Postives = 115/154 (74.68%), Query Frame = 1 
Query:    1 FLAQGRQCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQ--ARVCAYKERSTNEWNVTEAVLDHVQCTGQSGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRDNG 456
             +AQ RQCRLDKR+ GG GK+ RC+GAI+    K  +GC   AR C   +++   W VTE VLDHV CTGQ+ +K++R  RR VE EAA L++ANH++T P+LVKTLKAT+GV++SERTA+R+R+D+LGKG+ A A  YQLL SY   +GRDNG
Sbjct:  155 MIAQSRQCRLDKRIIGGRGKLHRCTGAIVNG--KATSGCPVLARGC---KQTDGTWKVTEVVLDHVACTGQASNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDNG 303
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BLAST of mRNA_F-serratus_M_contig1163.1350.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.200e-37
Identity = 73/135 (54.07%), Postives = 98/135 (72.59%), Query Frame = 1 
Query:   70 CSGAIIVAGVKGATGCQARVCAYKERSTNEWNVTEAVLDHVQCTGQSGDKRKRACRRSVEEEAAKLINANHKLTSPALVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRDNGNIVECE 474
            C+GAI+    K  +GC  R    K+ +   W V + VLDHV  TGQ+G+K++R  RR VE EA  L++ANH++T P+LVKTLKAT+GV++SERTA+R+R+D+LGKG+ A A  YQLL SY   +GRDN NIVEC+
Sbjct:   21 CTGAIVNG--KATSGCPVRARGCKQ-TDGTWKVMDVVLDHVARTGQAGNKKQRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYGDLLGRDNRNIVECK 152
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1163.1350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FZQ7_ECTSI3.130e-5558.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JX21_9PHAE4.030e-5357.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQC0_9PHAE8.550e-5258.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4I0_9PHAE3.540e-4957.50SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J5Y0_9PHAE4.850e-4957.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L768_9PHAE2.200e-3754.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1163contigF-serratus_M_contig1163:94664..95137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929066.193937-CDS-F-serratus_M_contig1163:94663..951371622929066.193937-CDS-F-serratus_M_contig1163:94663..95137Fucus serratus maleCDSF-serratus_M_contig1163 94664..95137 +
1690962689.8514297-CDS-F-serratus_M_contig1163:94663..951371690962689.8514297-CDS-F-serratus_M_contig1163:94663..95137Fucus serratus maleCDSF-serratus_M_contig1163 94664..95137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1163.1350.1prot_F-serratus_M_contig1163.1350.1Fucus serratus malepolypeptideF-serratus_M_contig1163 94664..95137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1163.1350.1

>prot_F-serratus_M_contig1163.1350.1 ID=prot_F-serratus_M_contig1163.1350.1|Name=mRNA_F-serratus_M_contig1163.1350.1|organism=Fucus serratus male|type=polypeptide|length=158bp
FLAQGRQCRLDKRVSGGLGKVIRCSGAIIVAGVKGATGCQARVCAYKERS
TNEWNVTEAVLDHVQCTGQSGDKRKRACRRSVEEEAAKLINANHKLTSPA
LVKTLKATAGVEISERTANRVRSDVLGKGQRATAAHYQLLDSYLSSIGRD
NGNIVECE
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mRNA from alignment at F-serratus_M_contig1163:94664..95137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1163.1350.1 ID=mRNA_F-serratus_M_contig1163.1350.1|Name=mRNA_F-serratus_M_contig1163.1350.1|organism=Fucus serratus male|type=mRNA|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig1163:94664..95137+ (Fucus serratus male)
TTTCTGGCACAGGGTAGGCAGTGCCGCCTAGATAAGAGAGTATCTGGCGG
CCTGGGCAAGGTCATCCGCTGCAGCGGGGCAATCATCGTCGCCGGCGTGA
AGGGGGCAACAGGTTGCCAGGCGCGCGTTTGCGCGTACAAGGAAAGGTCT
ACCAATGAATGGAATGTAACTGAGGCCGTCCTTGATCACGTGCAGTGCAC
CGGGCAGTCCGGTGACAAGAGAAAACGGGCCTGCCGAAGGTCGGTGGAGG
AAGAAGCCGCAAAGCTCATCAATGCGAACCACAAGCTAACATCGCCAGCA
CTCGTAAAAACGTTGAAAGCGACCGCCGGCGTTGAGATCTCCGAGCGTAC
CGCCAACCGCGTGCGATCCGACGTGCTCGGCAAAGGTCAACGTGCGACCG
CTGCACATTACCAACTTCTCGACAGCTACCTGAGCAGCATCGGGAGGGAC
AACGGCAACATCGTGGAATGCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1163:94664..95137+

>mRNA_F-serratus_M_contig1163.1350.1 ID=mRNA_F-serratus_M_contig1163.1350.1|Name=mRNA_F-serratus_M_contig1163.1350.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig1163:94664..95137+ (Fucus serratus male)
TTTCTGGCACAGGGTAGGCAGTGCCGCCTAGATAAGAGAGTATCTGGCGG
CCTGGGCAAGGTCATCCGCTGCAGCGGGGCAATCATCGTCGCCGGCGTGA
AGGGGGCAACAGGTTGCCAGGCGCGCGTTTGCGCGTACAAGGAAAGGTCT
ACCAATGAATGGAATGTAACTGAGGCCGTCCTTGATCACGTGCAGTGCAC
CGGGCAGTCCGGTGACAAGAGAAAACGGGCCTGCCGAAGGTCGGTGGAGG
AAGAAGCCGCAAAGCTCATCAATGCGAACCACAAGCTAACATCGCCAGCA
CTCGTAAAAACGTTGAAAGCGACCGCCGGCGTTGAGATCTCCGAGCGTAC
CGCCAACCGCGTGCGATCCGACGTGCTCGGCAAAGGTCAACGTGCGACCG
CTGCACATTACCAACTTCTCGACAGCTACCTGAGCAGCATCGGGAGGGAC
AACGGCAACATCGTGGAATGCGAGTTTCTGGCACAGGGTAGGCAGTGCCG
CCTAGATAAGAGAGTATCTGGCGGCCTGGGCAAGGTCATCCGCTGCAGCG
GGGCAATCATCGTCGCCGGCGTGAAGGGGGCAACAGGTTGCCAGGCGCGC
GTTTGCGCGTACAAGGAAAGGTCTACCAATGAATGGAATGTAACTGAGGC
CGTCCTTGATCACGTGCAGTGCACCGGGCAGTCCGGTGACAAGAGAAAAC
GGGCCTGCCGAAGGTCGGTGGAGGAAGAAGCCGCAAAGCTCATCAATGCG
AACCACAAGCTAACATCGCCAGCACTCGTAAAAACGTTGAAAGCGACCGC
CGGCGTTGAGATCTCCGAGCGTACCGCCAACCGCGTGCGATCCGACGTGC
TCGGCAAAGGTCAACGTGCGACCGCTGCACATTACCAACTTCTCGACAGC
TACCTGAGCAGCATCGGGAGGGACAACGGCAACATCGTGGAATGCGAG
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