mRNA_F-serratus_M_contig1162.1347.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1162.1347.1
Unique NamemRNA_F-serratus_M_contig1162.1347.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1162.1347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1162contigF-serratus_M_contig1162:197079..198672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size294
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1162.1347.1prot_F-serratus_M_contig1162.1347.1Fucus serratus malepolypeptideF-serratus_M_contig1162 197080..198672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929064.490227-CDS-F-serratus_M_contig1162:197079..1971421622929064.490227-CDS-F-serratus_M_contig1162:197079..197142Fucus serratus maleCDSF-serratus_M_contig1162 197080..197142 -
1690962688.8507516-CDS-F-serratus_M_contig1162:197079..1971421690962688.8507516-CDS-F-serratus_M_contig1162:197079..197142Fucus serratus maleCDSF-serratus_M_contig1162 197080..197142 -
1622929064.5155628-CDS-F-serratus_M_contig1162:197805..1979551622929064.5155628-CDS-F-serratus_M_contig1162:197805..197955Fucus serratus maleCDSF-serratus_M_contig1162 197806..197955 -
1690962688.8630695-CDS-F-serratus_M_contig1162:197805..1979551690962688.8630695-CDS-F-serratus_M_contig1162:197805..197955Fucus serratus maleCDSF-serratus_M_contig1162 197806..197955 -
1622929064.5348167-CDS-F-serratus_M_contig1162:198594..1986721622929064.5348167-CDS-F-serratus_M_contig1162:198594..198672Fucus serratus maleCDSF-serratus_M_contig1162 198595..198672 -
1690962688.8723917-CDS-F-serratus_M_contig1162:198594..1986721690962688.8723917-CDS-F-serratus_M_contig1162:198594..198672Fucus serratus maleCDSF-serratus_M_contig1162 198595..198672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1162.1347.1

>prot_F-serratus_M_contig1162.1347.1 ID=prot_F-serratus_M_contig1162.1347.1|Name=mRNA_F-serratus_M_contig1162.1347.1|organism=Fucus serratus male|type=polypeptide|length=97bp
SFLLQAGPLSDRHFRWIKAIARVVFQLLQFIVSADNINLLHRDIKMKNMY
VVQAESLEHARLAVGDFGAAQRGEETEEGNVVYRTGVCTWNHTSPRM
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mRNA from alignment at F-serratus_M_contig1162:197079..198672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1162.1347.1 ID=mRNA_F-serratus_M_contig1162.1347.1|Name=mRNA_F-serratus_M_contig1162.1347.1|organism=Fucus serratus male|type=mRNA|length=1594bp|location=Sequence derived from alignment at F-serratus_M_contig1162:197079..198672- (Fucus serratus male)
TCGTTTCTACTACAGGCGGGGCCCCTCTCCGACCGCCACTTCAGATGGAT
CAAGGCGATCGCGCGCGTTGTCTTTCAGGCGAGCTCGAGCGTGTATTGTA
GTCCAGGATGGATCCCGGCGGGTGCCTAACATATTAGAACCGACCGTGAT
CCTGGCGGCCGGTGGCCGGCAGACCACTTCCGCTTAGACCTATTTTTGTT
TATGATTTAGTCTAGTTGCGAGGATAACACTGGTGGTTAGATAATCCTGC
CCACCCTCTCCCCCCCCCCTCCGACTCGCATAGACACACTTTCAATGATT
TTCCGTATCATCTGCATGCACAGTATTAAAAACGTTTGTTTATCTCACGC
CAACGCTTCAGCAGCAGATACGCCCGCGTGGCACGCACGCGCAGGTTTCG
CGCATCCCTTTATTTTCCATGTCGCGTGGTCGCATCTCGAAACGCTCTGG
CCGGACGTACGGGTCCGAAAAGAGGCCCCGCTGAACTTTTCGTCAGCTTG
CCGCGCGCACTGCGCACTTTCTCCCATGATCTGCATCCCCTCGGCCTGAA
ATGATCAATCGACCCCTCCTCTCTTCACAGCGGAGAGGCTACCCTCTCGA
CAGCTCTTAATTGAGACTCGGCTCTGGTTCTCACAACCTGTGTGCTCCGT
CTTGGCCCCTGCTGCCCCTCCGGCTCTGTCACGCTCGGGTTGAGACCTCT
CCACCCCGCTAACGCAGCTGTTGCAGTTCATCGTGTCCGCGGATAACATC
AACCTCCTGCACAGGGACATCAAGATGAAGAACATGTACGTCGTGCAAGC
CGAGAGCCTAGAGCATGCGAGGCTGGCGGTTGGGGACTTCGGCGCTGCTC
AGCGAGGCGAGGAGACGGTGAGACACCGTGGGTAGCGTGTTGTGGCCCTG
AAGCCTCCTTCAGCCCGGTTCGCTAAAAAAATGCTGGATAATATAAACCG
TAGGTATGGTATGGTGCGTCTCCTGAGATGTTTCGCGGGCCCCCAGATTT
TTTTTTCGTTCAGAAAACGAAACAAACAAAAAACAACAAAAATGTCACAC
GGCAAAAAATATTTCTCCAGCCTCTCCTTGTGTCCGACGATTTTTAGGAG
GGTGGAGAGGGGTCGACCTAGCTCGTCCCGCGCGGTATGATGAAAACGGC
GAAAACTCAAATCGTGCACACGGTGGCGTGGCAATCGCGCTCGTAGACCG
TGCGTCGGTTGCGGTACCCAGCCTTTCGTGGTTGGGTTAACACGAACTTG
CCGTCGTTCGTACTCCCTCTTTCACGGGTATATCATGACGGTCGACTCCT
GCGCGATCTCTGCTCAACCGTAGTTCTTTCAACCTTTGACCCCGCCGAAA
GCAAGCAACGTGCGACGGAGACAAGGGTAACAATAAAGCCTCTGCCTTAA
ACCCCATTTGATACTCTGGGAGGGATGGGTAATCTTTCAATGCTGTACTA
CTCTGAGAGAGGTACAAGTGCGGTCGCTGATCTCCCATGAAATACAGACC
ATAACAAGTCTCTCTGATGCTCCGTCGCAGGAGGAAGGGAACGTTGTCTA
CCGCACCGGCGTCTGTACCTGGAACCACACGAGCCCGCGCATGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1162:197079..198672-

>mRNA_F-serratus_M_contig1162.1347.1 ID=mRNA_F-serratus_M_contig1162.1347.1|Name=mRNA_F-serratus_M_contig1162.1347.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig1162:197079..198672- (Fucus serratus male)
TCGTTTCTACTACAGGCGGGGCCCCTCTCCGACCGCCACTTCAGATGGAT
CAAGGCGATCGCGCGCGTTGTCTTTCAGTCGTTTCTACTACAGGCGGGGC
CCCTCTCCGACCGCCACTTCAGATGGATCAAGGCGATCGCGCGCGTTGTC
TTTCAGCTGTTGCAGTTCATCGTGTCCGCGGATAACATCAACCTCCTGCA
CAGGGACATCAAGATGAAGAACATGTACGTCGTGCAAGCCGAGAGCCTAG
AGCATGCGAGGCTGGCGGTTGGGGACTTCGGCGCTGCTCAGCGAGGCGAG
GAGACGCTGTTGCAGTTCATCGTGTCCGCGGATAACATCAACCTCCTGCA
CAGGGACATCAAGATGAAGAACATGTACGTCGTGCAAGCCGAGAGCCTAG
AGCATGCGAGGCTGGCGGTTGGGGACTTCGGCGCTGCTCAGCGAGGCGAG
GAGACGGAGGAAGGGAACGTTGTCTACCGCACCGGCGTCTGTACCTGGAA
CCACACGAGCCCGCGCATGGAGGAAGGGAACGTTGTCTACCGCACCGGCG
TCTGTACCTGGAACCACACGAGCCCGCGCATG
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