mRNA_F-serratus_M_contig1161.1343.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1161.1343.1
Unique NamemRNA_F-serratus_M_contig1161.1343.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1161.1343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1161contigF-serratus_M_contig1161:155892..157412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1161.1343.1prot_F-serratus_M_contig1161.1343.1Fucus serratus malepolypeptideF-serratus_M_contig1161 155925..157412 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929063.6372445-UTR-F-serratus_M_contig1161:155891..1559241622929063.6372445-UTR-F-serratus_M_contig1161:155891..155924Fucus serratus maleUTRF-serratus_M_contig1161 155892..155924 -
1690962688.5758443-UTR-F-serratus_M_contig1161:155891..1559241690962688.5758443-UTR-F-serratus_M_contig1161:155891..155924Fucus serratus maleUTRF-serratus_M_contig1161 155892..155924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929063.6487625-CDS-F-serratus_M_contig1161:155924..1561881622929063.6487625-CDS-F-serratus_M_contig1161:155924..156188Fucus serratus maleCDSF-serratus_M_contig1161 155925..156188 -
1690962688.5868547-CDS-F-serratus_M_contig1161:155924..1561881690962688.5868547-CDS-F-serratus_M_contig1161:155924..156188Fucus serratus maleCDSF-serratus_M_contig1161 155925..156188 -
1622929063.6608834-CDS-F-serratus_M_contig1161:157328..1574121622929063.6608834-CDS-F-serratus_M_contig1161:157328..157412Fucus serratus maleCDSF-serratus_M_contig1161 157329..157412 -
1690962688.5971339-CDS-F-serratus_M_contig1161:157328..1574121690962688.5971339-CDS-F-serratus_M_contig1161:157328..157412Fucus serratus maleCDSF-serratus_M_contig1161 157329..157412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1161.1343.1

>prot_F-serratus_M_contig1161.1343.1 ID=prot_F-serratus_M_contig1161.1343.1|Name=mRNA_F-serratus_M_contig1161.1343.1|organism=Fucus serratus male|type=polypeptide|length=116bp
MLGSSWNGDRKQLRRSRTPAALNARRVQEGRRVFPAGVGPGSPSRDGVNW
LPSRFGMSVETRRWYGWVRMVSQGVHTFSELQFGAFREGGGTRQAGSTVA
GSLVALYRMGTHQIW*
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mRNA from alignment at F-serratus_M_contig1161:155892..157412-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1161.1343.1 ID=mRNA_F-serratus_M_contig1161.1343.1|Name=mRNA_F-serratus_M_contig1161.1343.1|organism=Fucus serratus male|type=mRNA|length=1521bp|location=Sequence derived from alignment at F-serratus_M_contig1161:155892..157412- (Fucus serratus male)
ATGCTTGGAAGTAGTTGGAATGGCGATCGCAAGCAACTCCGACGCTCAAG
GACTCCGGCGGCGCTCAACGCTCGCCGTGTCCAGGTGGGCGACAGGTTCC
TGGATATCGAGAAAACGTACTGAACGACGCATGTATCTATATTATACCGC
CAAAACGGCGGTGCTATAATCGAGTAAAGGTATAAACACGTACTGTGTGT
TTGTGTGTGTGTTGCCATCCCAATTATTATGGACGTCAGACTTGTGGACG
TACCAGCCGGGGTCGAGGAAAGTCACCCAGTATTTCTCATCCACCTTCCT
TCTGCGGCGCTTGCCTTAATTTTTCTCGCGAGAAGGATTCAGCCTCTCCT
TTCCCTCGTCGACTGCGAAGTCGATTTTTTTGTACTAACGAATTAACCGT
TCTCGACTTGTTGGGTGTTTTTTTGGGGGGGGAGGGAGGAAAACTCCCAC
TTCGTGTGCTTGCACCGGTATTCGAGCTCACGTTCCACCGTCAGAAGGTT
TCGAGGTTACCAACTGAACCACCGGGGCGACCGTACAGAGTATGGATCTT
TATATGGTCCTTACATATAGCAGATTGGGTATTACTTAACGGGATATGGC
TGCTAATCCTGCTCGTGGTCTCGTCAAGAGATGATCGGACGTTACGAAGG
TCAACAGATCACATCCTGTTGTGATGCCCCGATTGACGAAAAAGTAAGAA
ATAAATAGGAATCATGCTGTCAGGAACAACCCCGTCACGACGCTATCGTA
TCGACTCTTAATACTTTACGAGCGACAGTGTATTAATAGTGGAGTGCTGC
CAGTTGTTGGTGTTTAAAGAAAAAACAGAACGCGCCTATACTTTCTGAGC
ATCCTCCAGTCAGAAGAAAAAATGTCAAAACGTTGTTTTGTTCACATTAA
CCGATCGGGCATCAACCATACCGGTACCCAGAACGTGGTCTGCTGGACAG
GGAAAATATCAGAGGGCCATCTACAGAGCTCCAGTGAGAGCATAAAGACG
AAACAAAAACAAGACAAAAACGACAAAAAGAAAGGAACAATATTAACACA
AAGAACATACCAGAAAAAAAGTAGGAGAAGGGCACTCGATAGAGAGAGTT
GGGATAGTGCTAGCCGCGAGCCATCCGATAACCTCCCTGGATCGTAACCA
TGCACCCGAACGCATAGCATCTACAACTTCGTTACCTCGTGCCCCTCTCC
CTCCGAACCCTGGTATCGAGGTAGGAGGGTAGGAGGGTCTTTCCGGCGGG
TGTAGGGCCGGGCTCACCCTCAAGAGATGGAGTCAACTGGCTGCCTTCGC
GATTCGGCATGTCGGTTGAGACGCGGCGGTGGTATGGTTGGGTGAGGATG
GTGTCCCAAGGGGTGCACACCTTTTCCGAGCTCCAATTTGGTGCCTTTCG
GGAGGGTGGCGGCACGCGACAGGCAGGGAGCACTGTCGCGGGGAGTCTGG
TAGCGCTCTATCGGATGGGTACGCACCAGATTTGGTAAAGGCGGAGGGCA
GCTCGATCGTCGACGACCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1161:155892..157412-

>mRNA_F-serratus_M_contig1161.1343.1 ID=mRNA_F-serratus_M_contig1161.1343.1|Name=mRNA_F-serratus_M_contig1161.1343.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig1161:155892..157412- (Fucus serratus male)
ATGCTTGGAAGTAGTTGGAATGGCGATCGCAAGCAACTCCGACGCTCAAG
GACTCCGGCGGCGCTCAACGCTCGCCGTGTCCAGATGCTTGGAAGTAGTT
GGAATGGCGATCGCAAGCAACTCCGACGCTCAAGGACTCCGGCGGCGCTC
AACGCTCGCCGTGTCCAGGAGGGTAGGAGGGTCTTTCCGGCGGGTGTAGG
GCCGGGCTCACCCTCAAGAGATGGAGTCAACTGGCTGCCTTCGCGATTCG
GCATGTCGGTTGAGACGCGGCGGTGGTATGGTTGGGTGAGGATGGTGTCC
CAAGGGGTGCACACCTTTTCCGAGCTCCAATTTGGTGCCTTTCGGGAGGG
TGGCGGCACGCGACAGGCAGGGAGCACTGTCGCGGGGAGTCTGGTAGCGC
TCTATCGGATGGGTACGCACCAGATTTGGTAAGAGGGTAGGAGGGTCTTT
CCGGCGGGTGTAGGGCCGGGCTCACCCTCAAGAGATGGAGTCAACTGGCT
GCCTTCGCGATTCGGCATGTCGGTTGAGACGCGGCGGTGGTATGGTTGGG
TGAGGATGGTGTCCCAAGGGGTGCACACCTTTTCCGAGCTCCAATTTGGT
GCCTTTCGGGAGGGTGGCGGCACGCGACAGGCAGGGAGCACTGTCGCGGG
GAGTCTGGTAGCGCTCTATCGGATGGGTACGCACCAGATTTGGTAA
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