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Homology
BLAST of mRNA_F-serratus_M_contig116.1327.1 vs. uniprot
Match: D8LN52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN52_ECTSI) HSP 1 Score: 645 bits (1665), Expect = 1.780e-225 Identity = 303/440 (68.86%), Postives = 361/440 (82.05%), Query Frame = 1
Query: 1 MFRVGWIFAADVASEFVPFTDIVSDVILLVSVWPSTQVFAPDDVEGCGERALWYLALAFTVIGTLVDLFPEMLLLTEIILHPGVFSSPSSMCKLTRLFFSDGKPVVVFASMDEHENPLDPSLVLIRDSLRRRLSSIAAGLFLRDGCLADLSPRWTYAGLVGLLVGGELLTAIGSSLFLRIEFGWPALISLLASLLALMISLRSHMREVGEKPLHRCTESPTDNGGRLGEFLLPGPVTFARYLMLVPVWPMILVYSESANFWPFTSSNPGDFSLPQSDEAMWVSPVDWLRIAVPELRVSDNNSPLSFIYWAIIPHLLWVLITGIWAVISGLARVFCWYVGHEEDWSAHSWGVYFASQESPFHVSSRRLQGALGLGFTTWVCKDLKRLLLFTAGLAVLCYQGYRRGTCMEQEWAFLFANAAWWIALIVAHIARRKNIFQPLS 1320
M + W+ A D+A EFVPFTDI+SDVILL++VWP T V APDDVEGCGERALWYLAL+FTV+GTLVDLFPEMLL++EI LHP V +SP SM L RL FSDGKPVVVFA+ +E E PL P L+ IRDSLRRRLSS+A FLRDGC A SP+WTYAGLVG+LVGGELLTAIG+ LFLRIEFGWPALISLLASLLAL+IS+R HMR VGEK LH C ES T NGGRL EFLLPGPVT R+L+ VPVWPM+LVYSE A+FWPF+ ++ GD SLP S++++W +P DW R+AVP L SDN+SPLS++YWAI+PHLLW L++ +W + G A + CWY GH EDWSAHSWGVYF+SQESPF V S RLQ ALG+GFT W ++ +RLL F+A LA + QGYRRG C+EQEWAF+FA AAWWIA+++ H AR+KN+F+PL+
Sbjct: 1 MNKATWVIAIDIACEFVPFTDILSDVILLIAVWPRTAVIAPDDVEGCGERALWYLALSFTVVGTLVDLFPEMLLVSEIALHPSVLTSPGSMGTLLRLVFSDGKPVVVFAATEEFEKPLAPPLLAIRDSLRRRLSSVATAFFLRDGCGAS-SPKWTYAGLVGVLVGGELLTAIGACLFLRIEFGWPALISLLASLLALLISVRCHMRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSEDSLWANPWDWFRVAVPSLSRSDNDSPLSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAEDWSAHSWGVYFSSQESPFSVWSARLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIAVLIGHAARKKNMFKPLN 439
BLAST of mRNA_F-serratus_M_contig116.1327.1 vs. uniprot
Match: A0A6H5JN14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN14_9PHAE) HSP 1 Score: 494 bits (1273), Expect = 7.210e-168 Identity = 237/342 (69.30%), Postives = 278/342 (81.29%), Query Frame = 1
Query: 1 MFRVGWIFAADVASEFVPFTDIVSDVILLVSVWPSTQVFAPDDVEGCGERALWYLALAFTVIGTLVDLFPEMLLLTEIILHPGVFSSPSSMCKLTRLFFSDGKPVVVFASMDEHENPLDPSLVLIRDSLRRRLSSIAAGLFLRDGCLADLSPRWTYAGLVGLLVGGELLTAIGSSLFLRIEFGWPALISLLASLLALMISLRSHMREVGEKPLHRCTESPTDNGGRLGEFLLPGPVTFARYLMLVPVWPMILVYSESANFWPFTSSNPGDFSLPQSDEAMWVSPVDWLRIAVPELRVSDNNSPLSFIYWAIIPHLLWVLITGIWAVISGLARVFCWYVGHEE 1026
M + W+ A D+A EFVPFTDI+SDVILL++VWP T V APDDVEGCGERALWYLAL+FTV+GTLVDLFPEMLL++EI LHP V +SP SM L RL FSDGKPVVVFA+ +E E PL P L+ IRDSLRRRLSS+A FL DGC A SP+WTYAGLVG+LVGGELLTAIG+ LFLRIEFGWPALISLLASLLAL+IS+R HMR VGEK LH C ES T NGGRL EFLLPGPVT R+L+ VPVWPM+LVYSE A+FWPF+ ++ GD SLP S E++W +P DW R+AVP L SDN+SP+S++YWAI+PHLLW L++ +W + G A + CWY GH E
Sbjct: 1 MNKTTWVIAIDIACEFVPFTDILSDVILLIAVWPRTAVIAPDDVEGCGERALWYLALSFTVVGTLVDLFPEMLLVSEIALHPSVLTSPGSMGTLLRLVFSDGKPVVVFAATEEFEKPLAPPLLAIRDSLRRRLSSVATAFFLGDGCGAS-SPKWTYAGLVGVLVGGELLTAIGACLFLRIEFGWPALISLLASLLALLISVRCHMRRVGEKTLHLCHESATGNGGRLFEFLLPGPVTLTRFLLAVPVWPMLLVYSEGASFWPFSMASRGDHSLPPSGESLWANPWDWFRVAVPSLSRSDNDSPMSYVYWAIVPHLLWTLVSAVWVGLLGAANLVCWYFGHAE 341
BLAST of mRNA_F-serratus_M_contig116.1327.1 vs. uniprot
Match: A0A6H5JNH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH5_9PHAE) HSP 1 Score: 152 bits (385), Expect = 5.260e-40 Identity = 66/99 (66.67%), Postives = 81/99 (81.82%), Query Frame = 1
Query: 1024 EDWSAHSWGVYFASQESPFHVSSRRLQGALGLGFTTWVCKDLKRLLLFTAGLAVLCYQGYRRGTCMEQEWAFLFANAAWWIALIVAHIARRKNIFQPLS 1320
EDWSAHSWGVYF+SQESPF V S RLQ ALG+GFT W ++ +RLL F+A LA + QGYRRG C+EQEWAF+FA AAWWI +++ H AR+KNIF+PL+
Sbjct: 10 EDWSAHSWGVYFSSQESPFSVWSWRLQSALGMGFTAWAAREFRRLLAFSAALAAVVVQGYRRGACLEQEWAFVFAVAAWWIVVLIGHAARKKNIFKPLN 108
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 2172 |
| Cds size | 1395 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929061.1347325-CDS-F-serratus_M_contig116:703405..703563 | 1622929061.1347325-CDS-F-serratus_M_contig116:703405..703563 | Fucus serratus male | CDS | F-serratus_M_contig116 703406..703563 + |
| 1690962687.1048465-CDS-F-serratus_M_contig116:703405..703563 | 1690962687.1048465-CDS-F-serratus_M_contig116:703405..703563 | Fucus serratus male | CDS | F-serratus_M_contig116 703406..703563 + |
| 1622929061.1518824-CDS-F-serratus_M_contig116:704042..705279 | 1622929061.1518824-CDS-F-serratus_M_contig116:704042..705279 | Fucus serratus male | CDS | F-serratus_M_contig116 704043..705279 + |
| 1690962687.1137784-CDS-F-serratus_M_contig116:704042..705279 | 1690962687.1137784-CDS-F-serratus_M_contig116:704042..705279 | Fucus serratus male | CDS | F-serratus_M_contig116 704043..705279 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929061.1707456-UTR-F-serratus_M_contig116:705279..706056 | 1622929061.1707456-UTR-F-serratus_M_contig116:705279..706056 | Fucus serratus male | UTR | F-serratus_M_contig116 705280..706056 + |
| 1690962687.1249564-UTR-F-serratus_M_contig116:705279..706056 | 1690962687.1249564-UTR-F-serratus_M_contig116:705279..706056 | Fucus serratus male | UTR | F-serratus_M_contig116 705280..706056 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig116.1327.1 >prot_F-serratus_M_contig116.1327.1 ID=prot_F-serratus_M_contig116.1327.1|Name=mRNA_F-serratus_M_contig116.1327.1|organism=Fucus serratus male|type=polypeptide|length=465bp
MFRVGWIFAADVASEFVPFTDIVSDVILLVSVWPSTQVFAPDDVEGCGER ALWYLALAFTVIGTLVDLFPEMLLLTEIILHPGVFSSPSSMCKLTRLFFS DGKPVVVFASMDEHENPLDPSLVLIRDSLRRRLSSIAAGLFLRDGCLADL SPRWTYAGLVGLLVGGELLTAIGSSLFLRIEFGWPALISLLASLLALMIS LRSHMREVGEKPLHRCTESPTDNGGRLGEFLLPGPVTFARYLMLVPVWPM ILVYSESANFWPFTSSNPGDFSLPQSDEAMWVSPVDWLRIAVPELRVSDN NSPLSFIYWAIIPHLLWVLITGIWAVISGLARVFCWYVGHEEDWSAHSWG VYFASQESPFHVSSRRLQGALGLGFTTWVCKDLKRLLLFTAGLAVLCYQG YRRGTCMEQEWAFLFANAAWWIALIVAHIARRKNIFQPLSLIPRESGHGR GVARITPAESYARS* back to topmRNA from alignment at F-serratus_M_contig116:703406..706056+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig116.1327.1 ID=mRNA_F-serratus_M_contig116.1327.1|Name=mRNA_F-serratus_M_contig116.1327.1|organism=Fucus serratus male|type=mRNA|length=2651bp|location=Sequence derived from alignment at F-serratus_M_contig116:703406..706056+ (Fucus serratus male) ATGTTTCGGGTCGGTTGGATTTTCGCTGCAGATGTGGCAAGCGAGTTTGT
GCCGTTCACGGACATCGTAAGTGACGTCATCCTCCTCGTGTCCGTGTGGC
CGTCGACTCAAGTCTTCGCTCCTGACGATGTTGAGGGCTGTGGGGAGCGT
GCCCTCTGGTAAGCAACCGTGAGCCTATGCTTTCGATTTTCCTCGACCTG
AGAGATATGTATACATATATCTTTTGTCTCTTGTGTGAGGTTAATTTTGC
GAACGAGGAAGACATTTGCCGTTGCTGCAGATCTTGGCCAATATTGATGG
AGCGGAGATAACTACGAGTATAAATCCATGAAGCTATGAAGCTATGTCGG
CAAAACTCAACGTCGAGCGTTTCGCACAGTAGGATACAATAGATTTTAAT
GTCAGCGTTGTCAGCGTTGGTAGAGATACAAACAAAAAGGCAGCAGTTTT
TATTTGCGACAAAATATCTAAAGCGTACTTGCATCTCCTGGCGACGATTG
GACCAGGTAATGTACCAGGTAATCATTACTTGTCATTACTTGTACTATCC
GTCTCTAAAACTCGCTTCGACTGATCATGGCTGGTGGATTACGGTTACCC
CTCCGTTTTCGGATCGCGTGCTGAATTGAATTTGAAGGTACCTGGCGTTG
GCGTTCACCGTAATTGGCACTCTGGTGGACCTTTTTCCAGAGATGCTGCT
TCTCACGGAGATTATTTTGCACCCAGGCGTGTTCTCCAGTCCCAGCTCGA
TGTGCAAGCTGACGCGGCTGTTCTTCAGCGACGGGAAACCGGTGGTCGTT
TTCGCCTCCATGGATGAGCATGAAAATCCGTTGGATCCGTCGCTGGTCCT
CATTCGCGATTCTCTGCGCCGGCGACTGTCTTCCATCGCCGCTGGCCTGT
TTCTGCGAGATGGCTGCCTGGCTGACCTCTCCCCAAGGTGGACTTACGCC
GGCCTGGTGGGCTTGCTCGTAGGGGGCGAACTCCTGACTGCTATCGGCTC
GTCGTTGTTCCTGCGGATCGAGTTCGGGTGGCCTGCGTTAATCTCTCTCC
TGGCGAGTCTTCTCGCACTTATGATATCGCTGCGAAGCCACATGCGCGAG
GTGGGGGAGAAGCCGCTGCACCGATGCACCGAATCGCCTACGGACAACGG
TGGCAGACTCGGCGAGTTTCTGTTGCCGGGCCCTGTGACCTTCGCCCGCT
ACTTGATGCTTGTTCCTGTGTGGCCAATGATCCTGGTCTACTCGGAGAGC
GCCAACTTCTGGCCGTTCACCTCTTCGAACCCTGGGGATTTCTCTCTGCC
ACAGTCGGACGAAGCGATGTGGGTTTCTCCGGTAGACTGGCTCAGGATCG
CCGTGCCAGAACTCCGTGTTTCGGACAACAACAGCCCGCTGAGCTTTATC
TACTGGGCCATCATACCTCACCTGTTGTGGGTATTGATAACCGGGATATG
GGCTGTCATCTCTGGACTGGCTCGAGTCTTCTGTTGGTACGTTGGACACG
AGGAAGACTGGTCCGCCCACAGTTGGGGAGTTTATTTCGCTTCGCAGGAG
AGTCCTTTCCATGTCTCGTCGCGTAGGTTACAGGGGGCGCTGGGGTTAGG
GTTTACTACTTGGGTGTGTAAAGACTTGAAGCGCTTGTTGTTGTTCACGG
CTGGGCTGGCGGTATTGTGCTACCAAGGATACCGACGAGGCACGTGCATG
GAGCAAGAGTGGGCTTTCCTATTCGCCAACGCGGCGTGGTGGATAGCATT
GATCGTCGCGCACATTGCTCGGCGCAAGAATATATTCCAGCCCCTTAGTC
TGATTCCGCGTGAGAGTGGCCACGGCCGAGGCGTTGCAAGAATTACACCT
GCTGAATCTTATGCCAGGTCGTAAAATATTTTGAAGTGTACAGCCAGTAG
TGCTGTCTTATGTTGTGCCGTCGCAGATCTGTTCTTATTCTCGATGTCTC
GTATAAGGACGACTCTACCCTACCCCCAAAGCGGACGGGGTGCACTTTAT
AGATATGGTATGATATGGTACAGGTTAAGACAGGGAAGAGCTTCGTCCCT
GTCGAAGCCTCGAAAGGCGGATGGGGTGCACTTTCTAGATATGGTACAGG
TTAAGACAGGGAAGAGCTTCGTCCCTGTCGAAGCCTCGCTTTACCGAGGC
ACTCCTCATGCGGCTACAGGGCTAATTATTGTGATCGCCGATGCTTTAGT
TTCTCGATGTGTTAGCATGCACGATATGGGTGTTTATTTCCGAGGGATTT
TGCGGGCTGTCGGTCTGTGGTGATATTATTAGCTGGGTGCGGTCTTGGGA
GTTGTTCGAAGCGGTGCTGATTCCAGTGGCGCGGTGTGCTGCAAAAATGC
TTCTTCACATCGCGACTATGCGACTATGCTAAGGGCGGCGAAAATAGATT
GCATTGGGGAAGGTTAGGAAATACGTAAATTGCGAAAGGCGTGACGTAAA
TTTTTTAAGAGTACCAGGTACAAGAGAAGAATGAGCTGCTGGAGGGAATC
GTGATGCCTCGGTCAAGTTTATAGACTGAACAAAGAATGTGCACCTCATG
GAAGCACCCAGGTGATAATCGCCGGTTTGTTTTCAAATTAATTACCAGTG
TTATGATATGGACACGACGAGTAGTGTCTGCGTTGTTTTGTTAGGCTCCT
G back to topCoding sequence (CDS) from alignment at F-serratus_M_contig116:703406..706056+ >mRNA_F-serratus_M_contig116.1327.1 ID=mRNA_F-serratus_M_contig116.1327.1|Name=mRNA_F-serratus_M_contig116.1327.1|organism=Fucus serratus male|type=CDS|length=2790bp|location=Sequence derived from alignment at F-serratus_M_contig116:703406..706056+ (Fucus serratus male) ATGTTTCGGGTCGGTTGGATTTTCGCTGCAGATGTGGCAAGCGAGTTTGT GCCGTTCACGGACATCGTAAGTGACGTCATCCTCCTCGTGTCCGTGTGGC CGTCGACTCAAGTCTTCGCTCCTGACGATGTTGAGGGCTGTGGGGAGCGT GCCCTCTGATGTTTCGGGTCGGTTGGATTTTCGCTGCAGATGTGGCAAGC GAGTTTGTGCCGTTCACGGACATCGTAAGTGACGTCATCCTCCTCGTGTC CGTGTGGCCGTCGACTCAAGTCTTCGCTCCTGACGATGTTGAGGGCTGTG GGGAGCGTGCCCTCTGGTACCTGGCGTTGGCGTTCACCGTAATTGGCACT CTGGTGGACCTTTTTCCAGAGATGCTGCTTCTCACGGAGATTATTTTGCA CCCAGGCGTGTTCTCCAGTCCCAGCTCGATGTGCAAGCTGACGCGGCTGT TCTTCAGCGACGGGAAACCGGTGGTCGTTTTCGCCTCCATGGATGAGCAT GAAAATCCGTTGGATCCGTCGCTGGTCCTCATTCGCGATTCTCTGCGCCG GCGACTGTCTTCCATCGCCGCTGGCCTGTTTCTGCGAGATGGCTGCCTGG CTGACCTCTCCCCAAGGTGGACTTACGCCGGCCTGGTGGGCTTGCTCGTA GGGGGCGAACTCCTGACTGCTATCGGCTCGTCGTTGTTCCTGCGGATCGA GTTCGGGTGGCCTGCGTTAATCTCTCTCCTGGCGAGTCTTCTCGCACTTA TGATATCGCTGCGAAGCCACATGCGCGAGGTGGGGGAGAAGCCGCTGCAC CGATGCACCGAATCGCCTACGGACAACGGTGGCAGACTCGGCGAGTTTCT GTTGCCGGGCCCTGTGACCTTCGCCCGCTACTTGATGCTTGTTCCTGTGT GGCCAATGATCCTGGTCTACTCGGAGAGCGCCAACTTCTGGCCGTTCACC TCTTCGAACCCTGGGGATTTCTCTCTGCCACAGTCGGACGAAGCGATGTG GGTTTCTCCGGTAGACTGGCTCAGGATCGCCGTGCCAGAACTCCGTGTTT CGGACAACAACAGCCCGCTGAGCTTTATCTACTGGGCCATCATACCTCAC CTGTTGTGGGTATTGATAACCGGGATATGGGCTGTCATCTCTGGACTGGC TCGAGTCTTCTGTTGGTACGTTGGACACGAGGAAGACTGGTCCGCCCACA GTTGGGGAGTTTATTTCGCTTCGCAGGAGAGTCCTTTCCATGTCTCGTCG CGTAGGTTACAGGGGGCGCTGGGGTTAGGGTTTACTACTTGGGTGTGTAA AGACTTGAAGCGCTTGTTGTTGTTCACGGCTGGGCTGGCGGTATTGTGCT ACCAAGGATACCGACGAGGCACGTGCATGGAGCAAGAGTGGGCTTTCCTA TTCGCCAACGCGGCGTGGTGGATAGCATTGATCGTCGCGCACATTGCTCG GCGCAAGAATATATTCCAGCCCCTTAGTCTGATTCCGCGTGAGAGTGGCC ACGGCCGAGGCGTTGCAAGAATTACACCTGCTGAATCTTATGCCAGGTCG TAAGTACCTGGCGTTGGCGTTCACCGTAATTGGCACTCTGGTGGACCTTT TTCCAGAGATGCTGCTTCTCACGGAGATTATTTTGCACCCAGGCGTGTTC TCCAGTCCCAGCTCGATGTGCAAGCTGACGCGGCTGTTCTTCAGCGACGG GAAACCGGTGGTCGTTTTCGCCTCCATGGATGAGCATGAAAATCCGTTGG ATCCGTCGCTGGTCCTCATTCGCGATTCTCTGCGCCGGCGACTGTCTTCC ATCGCCGCTGGCCTGTTTCTGCGAGATGGCTGCCTGGCTGACCTCTCCCC AAGGTGGACTTACGCCGGCCTGGTGGGCTTGCTCGTAGGGGGCGAACTCC TGACTGCTATCGGCTCGTCGTTGTTCCTGCGGATCGAGTTCGGGTGGCCT GCGTTAATCTCTCTCCTGGCGAGTCTTCTCGCACTTATGATATCGCTGCG AAGCCACATGCGCGAGGTGGGGGAGAAGCCGCTGCACCGATGCACCGAAT CGCCTACGGACAACGGTGGCAGACTCGGCGAGTTTCTGTTGCCGGGCCCT GTGACCTTCGCCCGCTACTTGATGCTTGTTCCTGTGTGGCCAATGATCCT GGTCTACTCGGAGAGCGCCAACTTCTGGCCGTTCACCTCTTCGAACCCTG GGGATTTCTCTCTGCCACAGTCGGACGAAGCGATGTGGGTTTCTCCGGTA GACTGGCTCAGGATCGCCGTGCCAGAACTCCGTGTTTCGGACAACAACAG CCCGCTGAGCTTTATCTACTGGGCCATCATACCTCACCTGTTGTGGGTAT TGATAACCGGGATATGGGCTGTCATCTCTGGACTGGCTCGAGTCTTCTGT TGGTACGTTGGACACGAGGAAGACTGGTCCGCCCACAGTTGGGGAGTTTA TTTCGCTTCGCAGGAGAGTCCTTTCCATGTCTCGTCGCGTAGGTTACAGG GGGCGCTGGGGTTAGGGTTTACTACTTGGGTGTGTAAAGACTTGAAGCGC TTGTTGTTGTTCACGGCTGGGCTGGCGGTATTGTGCTACCAAGGATACCG ACGAGGCACGTGCATGGAGCAAGAGTGGGCTTTCCTATTCGCCAACGCGG CGTGGTGGATAGCATTGATCGTCGCGCACATTGCTCGGCGCAAGAATATA TTCCAGCCCCTTAGTCTGATTCCGCGTGAGAGTGGCCACGGCCGAGGCGT TGCAAGAATTACACCTGCTGAATCTTATGCCAGGTCGTAA back to top
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