mRNA_F-serratus_M_contig116.1312.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig116.1312.1
Unique NamemRNA_F-serratus_M_contig116.1312.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig116.1312.1 vs. uniprot
Match: A0A6H5JI08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI08_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.940e-73
Identity = 152/296 (51.35%), Postives = 202/296 (68.24%), Query Frame = 1 
Query:   13 SGFGHLDSLVDDIKKKESDRVKASKLESHLRQLRLRAESDATEASQVKSELEAAQAERMSLQKRIGLLTRKNEDLATENAKLLEEKCDFQRSMANNEAKLKQDEDDLRRAQHEFVQDLEKANLAYSRNRAVMNTLLGRKGVGCAEVPSPDEVDNMKRAAAKTQEAILRAAELEARLQGVKAESLAFKKEAADSAQKLQALRKEFVSLQKVRNKTSAGASIGQSKSQRRGXXXXXXXKGRDYDMDNHRRQQQRISELEHEVAHLEETCSRQAEYIGQLEEYANSVEAANAQLMQQQQ 900
            +GFGHL SLVDDI KK+ +R+K   LES LRQ R+RA+++  +ASQ+K ELE A A+R+SLQ+ IGLL+R+NEDL  E AKL E+  DFQRSM NNEAKLK++E DL++AQ  FV+ LEK+N +YSR+RAVMNTL+GR G+GCAE+PSP+E++  +  AA       RAAEL+ARL  V+AES A K+EAA S++K Q LR+E  S +  RN     +S G  +  +                         I+ LE+E+A L +TC+RQ EY+ QLEEYANSVEA N  L ++Q+
Sbjct:    2 AGFGHLGSLVDDINKKDGERLK---LESQLRQQRMRADAEEAKASQLKGELEVASADRVSLQQEIGLLSRRNEDLIAEKAKLSEQSSDFQRSMFNNEAKLKENERDLKKAQRGFVESLEKSNASYSRHRAVMNTLVGRNGMGCAEIPSPEELEAFRGLAA-------RAAELQARLHAVEAESQALKQEAATSSRKQQVLRREIDSFK--RNGAGGKSSAGSPRVDKGSGKNKQQTXXXXXXXXXXXXXXXHITALENEIARLNDTCNRQMEYMSQLEEYANSVEAINEDLRKEQE 285
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BLAST of mRNA_F-serratus_M_contig116.1312.1 vs. uniprot
Match: D8LN29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN29_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 3.010e-65
Identity = 139/291 (47.77%), Postives = 182/291 (62.54%), Query Frame = 1 
Query:   13 SGFGHLDSLVDDIKKKESDRVKASKLESHLRQLRLRAESDATEASQVKSELEAAQAERMSLQKRIGLLTRKNEDLATENAKLLEEKCDFQRSMANNEAKLKQDEDDLRRAQHEFVQDLEKANLAYSRNRAVMNTLLGRKGVGCAEVPSPDEVDNMKRAAAKTQEAILRAAELEARLQGVKAESLAFKKEAADSAQKLQALRKEFVSLQKVRNKTSAGASIGQSKSQRRGXXXXXXXKGRDYDMDNHRRQQQRISELEHEVAHLEETCSRQAEYIGQLEEYANSVEAANAQL 885
            +GFGHL SLVDDI K++ +R+K   LES LRQ R+RA+++  + SQ+K ELE A A+R+SLQ+ IGLL+R+NEDL  E AKL E+  DFQRSM NNEAKLK++E DL+ AQ  FV  LEK+N +YSR+RAVMN L+GR GVGCAE+PSP+E++  +  AA       RAAEL+ARL  V+AES A K+EAA S++K + L++E  S +                                                   +A L++TC+RQ EY+ QLEEYANSVEA N  L
Sbjct:    2 AGFGHLGSLVDDINKRDGERLK---LESQLRQQRMRADAEEAKVSQLKGELEVASADRVSLQQEIGLLSRRNEDLIAEKAKLSEQSSDFQRSMFNNEAKLKENERDLKEAQRGFVDSLEKSNASYSRHRAVMNNLVGRNGVGCAEIPSPEELEAFRGLAA-------RAAELQARLHAVEAESQALKQEAAASSRKQKVLQREIDSFK---------------------------------------------------IARLDDTCNRQMEYMSQLEEYANSVEAINEDL 231
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig116.1312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI08_9PHAE1.940e-7351.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN29_ECTSI3.010e-6547.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig116contigF-serratus_M_contig116:252991..256159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size906
Cds size906
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929057.72406-CDS-F-serratus_M_contig116:252990..2530771622929057.72406-CDS-F-serratus_M_contig116:252990..253077Fucus serratus maleCDSF-serratus_M_contig116 252991..253077 +
1690962685.7179234-CDS-F-serratus_M_contig116:252990..2530771690962685.7179234-CDS-F-serratus_M_contig116:252990..253077Fucus serratus maleCDSF-serratus_M_contig116 252991..253077 +
1622929057.7406783-CDS-F-serratus_M_contig116:253561..2537241622929057.7406783-CDS-F-serratus_M_contig116:253561..253724Fucus serratus maleCDSF-serratus_M_contig116 253562..253724 +
1690962685.7277973-CDS-F-serratus_M_contig116:253561..2537241690962685.7277973-CDS-F-serratus_M_contig116:253561..253724Fucus serratus maleCDSF-serratus_M_contig116 253562..253724 +
1622929057.760214-CDS-F-serratus_M_contig116:253904..2540521622929057.760214-CDS-F-serratus_M_contig116:253904..254052Fucus serratus maleCDSF-serratus_M_contig116 253905..254052 +
1690962685.7367487-CDS-F-serratus_M_contig116:253904..2540521690962685.7367487-CDS-F-serratus_M_contig116:253904..254052Fucus serratus maleCDSF-serratus_M_contig116 253905..254052 +
1622929057.772174-CDS-F-serratus_M_contig116:254362..2544791622929057.772174-CDS-F-serratus_M_contig116:254362..254479Fucus serratus maleCDSF-serratus_M_contig116 254363..254479 +
1690962685.7486331-CDS-F-serratus_M_contig116:254362..2544791690962685.7486331-CDS-F-serratus_M_contig116:254362..254479Fucus serratus maleCDSF-serratus_M_contig116 254363..254479 +
1622929057.7832112-CDS-F-serratus_M_contig116:254836..2549571622929057.7832112-CDS-F-serratus_M_contig116:254836..254957Fucus serratus maleCDSF-serratus_M_contig116 254837..254957 +
1690962685.7567894-CDS-F-serratus_M_contig116:254836..2549571690962685.7567894-CDS-F-serratus_M_contig116:254836..254957Fucus serratus maleCDSF-serratus_M_contig116 254837..254957 +
1622929057.7959924-CDS-F-serratus_M_contig116:255620..2557731622929057.7959924-CDS-F-serratus_M_contig116:255620..255773Fucus serratus maleCDSF-serratus_M_contig116 255621..255773 +
1690962685.7651076-CDS-F-serratus_M_contig116:255620..2557731690962685.7651076-CDS-F-serratus_M_contig116:255620..255773Fucus serratus maleCDSF-serratus_M_contig116 255621..255773 +
1622929057.8170652-CDS-F-serratus_M_contig116:256042..2561591622929057.8170652-CDS-F-serratus_M_contig116:256042..256159Fucus serratus maleCDSF-serratus_M_contig116 256043..256159 +
1690962685.7732697-CDS-F-serratus_M_contig116:256042..2561591690962685.7732697-CDS-F-serratus_M_contig116:256042..256159Fucus serratus maleCDSF-serratus_M_contig116 256043..256159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig116.1312.1prot_F-serratus_M_contig116.1312.1Fucus serratus malepolypeptideF-serratus_M_contig116 252991..256159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig116.1312.1

>prot_F-serratus_M_contig116.1312.1 ID=prot_F-serratus_M_contig116.1312.1|Name=mRNA_F-serratus_M_contig116.1312.1|organism=Fucus serratus male|type=polypeptide|length=302bp
MQHASGFGHLDSLVDDIKKKESDRVKASKLESHLRQLRLRAESDATEASQ
VKSELEAAQAERMSLQKRIGLLTRKNEDLATENAKLLEEKCDFQRSMANN
EAKLKQDEDDLRRAQHEFVQDLEKANLAYSRNRAVMNTLLGRKGVGCAEV
PSPDEVDNMKRAAAKTQEAILRAAELEARLQGVKAESLAFKKEAADSAQK
LQALRKEFVSLQKVRNKTSAGASIGQSKSQRRGDGGGDGGKGRDYDMDNH
RRQQQRISELEHEVAHLEETCSRQAEYIGQLEEYANSVEAANAQLMQQQQ
V*
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mRNA from alignment at F-serratus_M_contig116:252991..256159+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig116.1312.1 ID=mRNA_F-serratus_M_contig116.1312.1|Name=mRNA_F-serratus_M_contig116.1312.1|organism=Fucus serratus male|type=mRNA|length=3169bp|location=Sequence derived from alignment at F-serratus_M_contig116:252991..256159+ (Fucus serratus male)
ATGCAGCACGCGTCGGGCTTCGGACACCTTGATTCCCTCGTGGACGACAT
CAAGAAAAAGGAGAGCGACCGTGTCAAGGCAAGCAAAGTACGCTGCGGTC
GATGTTTCCCAAAGGAAAGGCGCCTTGCCAATGTCAACGGGCGTGGTATC
GCAAGACATAAACGATCTTCACAAATCTATATGTGAAGTGGTGGGGCAAG
TGACGTGTTCCTCGTATTCATATCGGCACTCTGTGTGTGTATAGCTAGAG
GAATGTACGTCTACACCCGACTTCAATATTCATGTTTTCTAACGGCGATT
CTTTGGCTGCCTCATCATATAGTTCATGCCAATGGCTTGATCTTTCCTTC
GGAGTGACTCGCTCTTAGTCAAAGTTGAAACATTGTGGTGATCTCATTGA
CATCCCCTGTCCCTTTCACCCGTTATAATCACACAGGCCTCGGTGGACAT
AGGCTCGATTTCTCCCGCTGTTTCTGTCTGGGGGTTCTCTAACCTAGCCT
CCCTCAGTTCGTCTTCTACCCCCCCCCATCCACTAATGGGTATACTCTTC
TATTGTCCGCGTTAACTTTAGCTCGAGTCACATCTGCGACAGCTTCGCCT
GAGGGCCGAGTCAGATGCCACGGAGGCCTCTCAAGTCAAGTCGGAGCTCG
AAGCGGCACAAGCCGAGCGTATGTCACTACAAAAACGGATTGGTCTTCTC
ACACGGAAGAACGAAGATCTTGCTACGGAGAACGGTCAGCTCTGTTATAA
TGTGGCGTAAAATATATGAAGCCCGCATCATACATCATACTGTATGTGTA
GGCCACCCTTCAAGTTACCGCTTGAACAGCTCTTTGGATGCGGACCTTTC
CTGAGATGTGCTGATACCATTCGTTGTTCTGAACTGATCACCCCCCCCCC
CCTTTTCTATTCAGCCAAGCTCCTTGAAGAGAAATGCGACTTTCAACGGT
CGATGGCCAACAACGAGGCCAAGCTCAAGCAGGACGAGGACGACTTGCGC
CGGGCGCAGCACGAATTCGTCCAAGATCTGGAAAAGGCCAACCTTGCGTA
CTCGCGCAACCGGTGGGTTTTAACCTCCTGTAGGCTTGAGGGGTACGACT
TCATCTCTGACGTGACATCGTGCAGCTCTAAGTGCTACTGACGCGGCTCC
CTGAAGATGCTGTTGTTGGATGCATCACTTGGCAGAGATAGACGATTTTA
ATTCAATTTACTTTTTGCACTGATGTGGGCATCTTTGTGTGCCTGAGGAA
GGTATCGCCCGATGGGGTGTAGGGCTCCGTAAAATGGAAGATGCACTCAT
CGTCGTGCATCTCCCTTCGGCCAGGCCCAGGGATTAAGTTAAAAACGTCA
TTCCAACGTGTTCGTCTATCAGGGCTGTCATGAATACGCTTCTCGGTCGG
AAAGGGGTCGGCTGTGCCGAGGTTCCGTCCCCAGATGAGGTGGATAATAT
GAAACGAGCTGCGGCAAAGACCCAGGAGGCGATTCTCAGGTAGAAATTTG
TTGGCTCGAACTCCATGTCCCTCTCAACAGGGCAGCCTTTGGGCGCCCGA
TGTGAATCATCTGACCCCCCAAAATCTCTCTAAGGGAGCGCGATTGAACG
TCCACCGTCGCGCTTCGTATCGGGAGTAATATTCATACTATATAGACAAA
TTCATCATCACTCGAAAACTTGCCTTTTCGCCGAGTCCGCAGTATCTCTA
TCTCTGTAAGAACTTTAGTATCAGGCAATTTTCTAGGTAAGGACATCAGG
GAGAAACGAAGACTCATGGGCGCTAATAATCCGTATGGGCCTCAAGACCA
AGTCGTGTCCGAACGTAGCTTCGTGTTGATGCCTTTGTGTCGGCAGGGCG
GCGGAGTTGGAGGCCCGGCTGCAGGGAGTGAAAGCTGAGTCCCTAGCTTT
CAAGAAGGAAGCTGCCGACAGTGCCCAAAAGCTGCAGGCCCTTAGAAAAG
AGTTTGTTTCTCTTCAGGTGATCTGTTTGTTTCTCTTCAGGTGATCTGCT
TGTTTCTCTTCAGGTGATCTGTTTGTTTCTCTTCAGGTGATCTGTTTGTT
TCTCTTCAGGTGATCTGCTTGTTTCTCTTCAGGTGATCTGTTTGTTTCTC
TTCAGGTGATCTGTTTGTTTCTCTTCAGGTGATCTGCTTGTTTCTCTTCA
GGTGATCTGTTTGTTTCTCTTCAGGTGATCTGCTTGTTTCTCTTCAGGTG
ATCTGTTTGTTTCTCTTCAGGTGATCTGTTTGTTTCTCTTCAGGTGATCT
GCTTGTTTCTCTTCAGGTGATCTGTTTGTTTCTCTTCAGGTGATCTGCTT
GAAACCTTAAACATAACATAACCTAACCGGGGTTACAAACTGCAGCACCC
ATATTTCAGTAAGTTTCTAAACCTTTTTGACTTAGGGCACATACTGCTAT
GTTTTATCGAGACTCGAAACGTCGCCAAAATCTGATGGTGTTAGTTATGC
CAAACAATCGTCTCCTTGCCCAAAATATAGCCATTCGGGGGTAATCAAGC
CGCCGGCAATCACATAGCATGCAATTTAGTGATTGACCATAGCACACGCG
ATTGATACCAGACTATTTTCTGTCATATCCTTGGAGTCTACAGCCCCATA
GACATGCACTAATGCTCATGATCACAGGAGAAGGTACGGAACAAAACGAG
CGCTGGCGCCAGTATCGGCCAGTCCAAAAGTCAGAGGAGAGGCGACGGAG
GCGGTGATGGTGGCAAGGGTAGGGACTATGACATGGACAATCACAGACGC
CAGCAGCAACGAATTTCCGAGCTAGAGCATGAGGTTTGTTAAAACTAAAC
ATTTTTTCTTGTGTAGTACTTTATAAACTGAACCCACACTGTGCGTCAAT
ACCTTTGGAGTTATGGCATGGCAACAACAGGAAAACTTTGATGACGCAGG
CTTAGAATTCATCATCAACCCAAGGCTCGCCAGGAAACTCGACAGGCCGG
TTTTGGCCGTGATATATGACCGTGGCTAGAAGAATAGTCATAACCTCCAG
GGAAATAGCAAATCGTCGGTTATCAGGCCCAAAACCGAACGTTCTCGCTC
AGGTTGCGCATCTAGAGGAAACGTGCAGCAGGCAGGCCGAGTACATCGGT
CAACTCGAAGAGTACGCCAATAGCGTCGAGGCTGCCAATGCACAGCTGAT
GCAACAGCAACAGGTGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig116:252991..256159+

>mRNA_F-serratus_M_contig116.1312.1 ID=mRNA_F-serratus_M_contig116.1312.1|Name=mRNA_F-serratus_M_contig116.1312.1|organism=Fucus serratus male|type=CDS|length=1812bp|location=Sequence derived from alignment at F-serratus_M_contig116:252991..256159+ (Fucus serratus male)
ATGCAGCACGCGTCGGGCTTCGGACACCTTGATTCCCTCGTGGACGACAT
CAAGAAAAAGGAGAGCGACCGTGTCAAGGCAAGCAAAATGCAGCACGCGT
CGGGCTTCGGACACCTTGATTCCCTCGTGGACGACATCAAGAAAAAGGAG
AGCGACCGTGTCAAGGCAAGCAAACTCGAGTCACATCTGCGACAGCTTCG
CCTGAGGGCCGAGTCAGATGCCACGGAGGCCTCTCAAGTCAAGTCGGAGC
TCGAAGCGGCACAAGCCGAGCGTATGTCACTACAAAAACGGATTGGTCTT
CTCACACGGAAGAACGAAGATCTTGCTACGGAGAACGCTCGAGTCACATC
TGCGACAGCTTCGCCTGAGGGCCGAGTCAGATGCCACGGAGGCCTCTCAA
GTCAAGTCGGAGCTCGAAGCGGCACAAGCCGAGCGTATGTCACTACAAAA
ACGGATTGGTCTTCTCACACGGAAGAACGAAGATCTTGCTACGGAGAACG
CCAAGCTCCTTGAAGAGAAATGCGACTTTCAACGGTCGATGGCCAACAAC
GAGGCCAAGCTCAAGCAGGACGAGGACGACTTGCGCCGGGCGCAGCACGA
ATTCGTCCAAGATCTGGAAAAGGCCAACCTTGCGTACTCGCGCAACCGCC
AAGCTCCTTGAAGAGAAATGCGACTTTCAACGGTCGATGGCCAACAACGA
GGCCAAGCTCAAGCAGGACGAGGACGACTTGCGCCGGGCGCAGCACGAAT
TCGTCCAAGATCTGGAAAAGGCCAACCTTGCGTACTCGCGCAACCGGGCT
GTCATGAATACGCTTCTCGGTCGGAAAGGGGTCGGCTGTGCCGAGGTTCC
GTCCCCAGATGAGGTGGATAATATGAAACGAGCTGCGGCAAAGACCCAGG
AGGCGATTCTCAGGGCTGTCATGAATACGCTTCTCGGTCGGAAAGGGGTC
GGCTGTGCCGAGGTTCCGTCCCCAGATGAGGTGGATAATATGAAACGAGC
TGCGGCAAAGACCCAGGAGGCGATTCTCAGGGCGGCGGAGTTGGAGGCCC
GGCTGCAGGGAGTGAAAGCTGAGTCCCTAGCTTTCAAGAAGGAAGCTGCC
GACAGTGCCCAAAAGCTGCAGGCCCTTAGAAAAGAGTTTGTTTCTCTTCA
GGGCGGCGGAGTTGGAGGCCCGGCTGCAGGGAGTGAAAGCTGAGTCCCTA
GCTTTCAAGAAGGAAGCTGCCGACAGTGCCCAAAAGCTGCAGGCCCTTAG
AAAAGAGTTTGTTTCTCTTCAGAAGGTACGGAACAAAACGAGCGCTGGCG
CCAGTATCGGCCAGTCCAAAAGTCAGAGGAGAGGCGACGGAGGCGGTGAT
GGTGGCAAGGGTAGGGACTATGACATGGACAATCACAGACGCCAGCAGCA
ACGAATTTCCGAGCTAGAGCATGAGAAGGTACGGAACAAAACGAGCGCTG
GCGCCAGTATCGGCCAGTCCAAAAGTCAGAGGAGAGGCGACGGAGGCGGT
GATGGTGGCAAGGGTAGGGACTATGACATGGACAATCACAGACGCCAGCA
GCAACGAATTTCCGAGCTAGAGCATGAGGTTGCGCATCTAGAGGAAACGT
GCAGCAGGCAGGCCGAGTACATCGGTCAACTCGAAGAGTACGCCAATAGC
GTCGAGGCTGCCAATGCACAGCTGATGCAACAGCAACAGGTGTGAGTTGC
GCATCTAGAGGAAACGTGCAGCAGGCAGGCCGAGTACATCGGTCAACTCG
AAGAGTACGCCAATAGCGTCGAGGCTGCCAATGCACAGCTGATGCAACAG
CAACAGGTGTGA
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