mRNA_F-serratus_M_contig116.1306.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig116.1306.1
Unique NamemRNA_F-serratus_M_contig116.1306.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig116.1306.1 vs. uniprot
Match: A0A6H5KER7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER7_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 9.020e-66
Identity = 127/243 (52.26%), Postives = 161/243 (66.26%), Query Frame = 2 
Query:  116 MSLPSRRNWRRGSISAALIYMAWLSPVSDVHGVVFLSPPRR--LQHGAFTSVSPEVLPARPAFREAGSPDLA----EKKSLGQESLLRGPDGGEDKDGEEDNEFNLNLGRALDHLAEDVPQMFSAPPRLEIFTQDIVLKDPVGELCHGRRLYGALHTSLRVLSAVAVATPRVRVTSIAFNKDRREVELKWTMIASAPLIGEDAVKISAVSVYRIDEHGLIYEHAIDNRIKRDLWEHSHSWMGV 826
            M+   +R  RR +    ++ +  L   S V    FL+  R    Q       +     ARP       P LA    + K  GQ S +R      D++  +D+EFN+N+GRA+D+LA DV  MFS  PRLEIFT D+ LKDPVGELCHGRRLYGALHTSLRVL+AV  ++PRV VTSI F  ++RE+ELKWTM ASAP +G D VK+SAVS+Y +++HGLIY+H+IDNRIKRDLWE+SHSWMGV
Sbjct:    2 MNSRQQRCSRRPAACCLIVALQGLQGQSFVAPSCFLNAQRASFTQAAGQQQTTSRAAAARPVSSLNSVPFLAASQEQAKPPGQWSPVRPGGKVPDQNDNDDHEFNINVGRAMDYLAADVALMFSTAPRLEIFTPDVRLKDPVGELCHGRRLYGALHTSLRVLAAVTTSSPRVGVTSIMFYPEKREIELKWTMTASAPFMG-DPVKLSAVSLYDLNDHGLIYQHSIDNRIKRDLWEYSHSWMGV 243
[Close]
BLAST of mRNA_F-serratus_M_contig116.1306.1 vs. uniprot
Match: A0A836CA49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA49_9STRA)

HSP 1 Score: 142 bits (357), Expect = 8.970e-35
Identity = 83/226 (36.73%), Postives = 124/226 (54.87%), Query Frame = 2 
Query:  284 ARPAFREAGSPDLAEKKSLGQESLLRGPDGGEDKDGEEDNEFNLNLGRALDHLAEDVPQMFSAPPRLEIFTQDIVLKDPVGELCHGRRLYGALHTSLRVLSAVAVATPRVRVTSIAFNKDRREVELKWTMIASAPLIGEDAVKISAVSVYRIDEHGLIYEHAIDNRIKRDLWEHSHSWMGVHVSGCRPPPS*LARSCLILETPGLCIQKEGRGDEGHRNVPARRGC 961
            A PA  E    +L E+ +  ++ L +       +D ++  EF + LG  +D L E++P +F   P L+IFT D+VLKDP G L  GRR+YGAL  SLR+LSAV    PRV V SI +N+ +REV+++ T    A L GE  V+++ +S Y++D+ GL++E   D+ IKR LWE+S+SW      G       +A  C+        +  + R  +    VP    C
Sbjct:   61 AAPAVNEVSRVELPERDTSTEDRLNQ-------EDEKKKQEFTVALGHCIDTLQEELPVLFERRPSLDIFTSDVVLKDPKGTLSRGRRMYGALFASLRLLSAVTGMHPRVTVHSIVYNEAQREVDVRLTFAFGAALTGEP-VQLACMSHYKLDDAGLVFEQEFDSVIKRHLWEYSNSWATTLTRGAAR----VAGPCIFAGMEPDAVPAQQRQQQAAAAVPRDSLC 274
[Close]
BLAST of mRNA_F-serratus_M_contig116.1306.1 vs. uniprot
Match: A0A7S2GY18_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GY18_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.180e-18
Identity = 46/131 (35.11%), Postives = 79/131 (60.31%), Query Frame = 2 
Query:  404 EFNLNLGRALDHLAEDVPQMFSAPPRLEIFTQDIVLKDPVGELCHGRRLYGALHTSLRVLSAVAVATPRVRVTSIAFNKDRREVELKWTMIASAPLIGEDAVKISAVSVYRIDEHGLIYEHAIDNRIKRDL 796
            E+NLN+G A++ +  D+P MF   P L IFT+D+ L D  G L  G+++Y   +++LR+   +  A P V + S+     + E+ +++++     L G + V+  A+SVYR++  GLIYEH ID+  + +L
Sbjct:   99 EYNLNVGSAIEAIRHDLPHMFQQEPDLSIFTEDVTLSDRSGSLLSGKKMYSTFYSTLRIARRLTSAKPIVNILSLRHMHWKDEICVRFSVTMDVAL-GLEPVQFDAISVYRLNGKGLIYEHRIDDVTRNNL 228
[Close]
BLAST of mRNA_F-serratus_M_contig116.1306.1 vs. uniprot
Match: D8LN61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN61_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.540e-17
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 2 
Query:  671 MIASAPLIGEDAVKISAVSVYRIDEHGLIYEHAIDNRIKRDLWEHSHSWMGVHVSGCRP 847
            M ASAP +G D VK+SAVS+Y +++HG IY+H+IDNRIKRDLWE+SHSWMGV  + C P
Sbjct:    1 MTASAPFMG-DPVKLSAVSLYDLNDHGFIYQHSIDNRIKRDLWEYSHSWMGVLKADCPP 58
[Close]
BLAST of mRNA_F-serratus_M_contig116.1306.1 vs. uniprot
Match: A0A4D9CWK3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWK3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.690e-16
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 2 
Query:  407 FNLNLGRALDHLAEDVPQMFSAPPRLEIFTQDIVLKDPVGELCHGRRLYGALHTSLRVLSAVAVATPRVRVTSIAFNKDRREVELKWTMIASAPLIGEDAVKISAVSVYRIDEHGLIYEHAIDNRIKRDLWE 802
            F +NLG+ALDHL  DVP +F   P L I+T+D+ L+D       G+ +Y  ++ SLR+        P V V +I +   R+ +E+++ +         D++   AVSVYR++  GLIYEH I+  I+ DL E
Sbjct:  301 FTINLGKALDHLRVDVPLLFEREPDLSIYTEDVRLRDHARIYASGKFMYQMVYFSLRLARIFMPMPPLVEVLNIRWCPARQSIEVRFQIRVDTL---SDSLYFDAVSVYRVNARGLIYEHLIEKVIRNDLSE 429
[Close]
BLAST of mRNA_F-serratus_M_contig116.1306.1 vs. uniprot
Match: A0A5J4Z164_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z164_PORPP)

HSP 1 Score: 80.9 bits (198), Expect = 4.000e-13
Identity = 42/158 (26.58%), Postives = 82/158 (51.90%), Query Frame = 2 
Query:  404 EFNLNLGRALDHLAEDVPQMFSAPPRLEIFTQDIVLKDPVGELCHGRRLYGALHTSLRVLSAVAVATPRVRVTSIAFNKDRREVELKWTMIASAPLIGEDAVKISAVSVYRIDEHGLIYEHAIDN-RIKRDLWEHSHSWMGVHVSGCRPPPS*LARSC 874
            +FN N+G+ ++ L +D P +    P L++FT+D++L++ +    HG+  Y A   +LR    +    PRV + ++ F+     V+L+W +   AP +      +  +S+YR+++HG  +   + N    R+ +  +   M V V+G R  P+    +C
Sbjct:  138 DFNANVGKLIETLRDDYPCLLERAPNLDMFTEDVILREHLTADLHGKNKYWAFFWALRAHMRLMFREPRVEILNLFFDDMDMSVQLRWRL-TGAPRLSNTTRVVDGISLYRVNQHGFCWMCELTNVNPPRNSFYAAIDRMAVSVAGQRVQPTTPVANC 294
[Close]
BLAST of mRNA_F-serratus_M_contig116.1306.1 vs. uniprot
Match: A0A7S0G5L4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G5L4_9RHOD)

HSP 1 Score: 70.9 bits (172), Expect = 3.420e-10
Identity = 34/133 (25.56%), Postives = 69/133 (51.88%), Query Frame = 2 
Query:  404 EFNLNLGRALDHLAEDVPQMFSAPPRLEIFTQDIVLKDPVGELCHGRRLYGALHTSLRVLSAVAVATPRVRVTSIAFNKDRREVELKWTMIAS--APLIGEDAVKI--SAVSVYRIDEHGLIYEHAIDNRIKR 790
            +F+ N+G     L ED   +F  PP L+I+T +++L+D       G+  Y      LR+   +     ++ +TS+ F  D  E+ ++W +      P +  ++  +    +S YR++EHG++ EH +D+ +++
Sbjct:   49 DFHANVGHVKQTLEEDYSHIFDRPPTLDIYTDNVILRDGNNFKLQGKDTYSTCFWLLRLHGHLLFRKLKMEITSLYFIDDLLEIRIRWRVSGKFRMPDVAMESTNVVFDGMSTYRLNEHGIVCEHDLDHTLRK 181
[Close]
BLAST of mRNA_F-serratus_M_contig116.1306.1 vs. uniprot
Match: A0A2V3IQ63_9FLOR (Biotin carboxyl carrier protein of acetyl-CoA carboxylase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ63_9FLOR)

HSP 1 Score: 72.0 bits (175), Expect = 1.430e-9
Identity = 41/150 (27.33%), Postives = 73/150 (48.67%), Query Frame = 2 
Query:  404 EFNLNLGRALDHLAEDVPQMFSAPPRLEIFTQDIVLKDPVGELCHGRRLYGALHTSLRVLSAVAVATPRVRVTSIAFNKDRREVELKWTMIASAP----LIGEDAVKISAVSVYRIDEHGLIYEHAIDNRIKRDLWEHS--HSWMGVHVS 835
            E+  N+G  +D L  D P + S  P L I+T  +   D  G    G+R Y  +   LR  +A+ ++   V + S+  +     + ++W    S      L  + A+ I  +SVYR++  G +YEH+++N ++R    H+  H W   ++S
Sbjct:   60 EYYANVGCVIDKLRADYPHLLSCAPDLSIYTDGVSFADSSGNRIFGKRAYANILWLLRTQAALFLSGHCVYIQSLYHDDSAGTIHIRWRAHLSPRSWILLSAQRAIVIDGMSVYRLNSDGWVYEHSLENNVRRKGPAHALDHVWALGNIS 209
[Close]
BLAST of mRNA_F-serratus_M_contig116.1306.1 vs. uniprot
Match: A0A7S2BP96_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BP96_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.200e-9
Identity = 44/135 (32.59%), Postives = 64/135 (47.41%), Query Frame = 2 
Query:  380 DKDGEEDNEFNLNLGRALDHLAEDVPQMFSAPPRLEIFTQDIVLKDPVGELCHGRRLYGALHTSLRVLSAVAVATPRVRVTSIAFNKDRREVELKWTM---IASAPLIGEDAVKISAVSVYRIDEHGLIYEHAID 775
            DK   E  EFNLN+G A+D L  D+P +    P L IF  D+ + DP GE   G   Y  ++  LR +S++A+           F+K R  +  K +    I   P   E  + I  VS Y  D  G++ +H +D
Sbjct:   45 DKTANEAQEFNLNVGSAIDTLRSDIPSLLHKAPDLSIFRDDVRVFDPNGEKLRGIAQYSQMYRVLRGMSSIALQDSSKIDARFFFDKSRSTLRSKVSAKLWIHGMPASAEP-MHIDVVSSYEFDAKGIVMKHTVD 178
[Close]
BLAST of mRNA_F-serratus_M_contig116.1306.1 vs. uniprot
Match: A0A0K9PMX7_ZOSMR (Uncharacterized protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PMX7_ZOSMR)

HSP 1 Score: 68.2 bits (165), Expect = 2.830e-9
Identity = 44/142 (30.99%), Postives = 74/142 (52.11%), Query Frame = 2 
Query:  371 GGEDKDGEEDN---EFNLNLGRALDHLAEDVPQMFSAPPRLEIFTQDIVLKDPVGELCHGRRLYGALHTSLRVLSAVAVATPRVRVTSIAFNKDRREVELKWTMIASAPLIGEDAVK---ISAVSVYRIDEHGLIYEHAIDN 778
            G +++D EE++   ++ +NLG A+  L E+ P MF   P  +I+  DIV KDPV     G   Y  +  +LR+ + +   T  V +  + +      + ++WT +   P +  D ++   +   S Y+ID HG IYEH +DN
Sbjct:   63 GSQNRDEEEEDGKRKYYVNLGYAITTLKEEAPVMFHREPSFDIYRDDIVFKDPVNTFS-GIENYKLILWALRLNTRIFYKTVWVDILRV-WQPAEDVIMIRWT-VHGIPRVAWDEIRHGRLEGTSEYKIDRHGKIYEHRVDN 201
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig116.1306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5KER7_9PHAE9.020e-6652.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CA49_9STRA8.970e-3536.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GY18_9STRA2.180e-1835.11Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D8LN61_ECTSI2.540e-1766.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CWK3_9STRA8.690e-1637.12Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A5J4Z164_PORPP4.000e-1326.58Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A7S0G5L4_9RHOD3.420e-1025.56Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IQ63_9FLOR1.430e-927.33Biotin carboxyl carrier protein of acetyl-CoA carb... [more]
A0A7S2BP96_9STRA2.200e-932.59Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A0K9PMX7_ZOSMR2.830e-930.99Uncharacterized protein n=1 Tax=Zostera marina Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig116contigF-serratus_M_contig116:147364..154239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog248742.XP_005644636.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Uncharacterized conserved protein (DUF2358)
EggNOG OGs2F04P@1,2T1C5@2759
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-05_003630.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1671
Cds size744
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig116.1306.1prot_F-serratus_M_contig116.1306.1Fucus serratus malepolypeptideF-serratus_M_contig116 148421..154124 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929056.280203-UTR-F-serratus_M_contig116:147363..1474001622929056.280203-UTR-F-serratus_M_contig116:147363..147400Fucus serratus maleUTRF-serratus_M_contig116 147364..147400 -
1690962685.0983279-UTR-F-serratus_M_contig116:147363..1474001690962685.0983279-UTR-F-serratus_M_contig116:147363..147400Fucus serratus maleUTRF-serratus_M_contig116 147364..147400 -
1622929056.2967145-UTR-F-serratus_M_contig116:147645..1484201622929056.2967145-UTR-F-serratus_M_contig116:147645..148420Fucus serratus maleUTRF-serratus_M_contig116 147646..148420 -
1690962685.1161315-UTR-F-serratus_M_contig116:147645..1484201690962685.1161315-UTR-F-serratus_M_contig116:147645..148420Fucus serratus maleUTRF-serratus_M_contig116 147646..148420 -
1622929056.3755918-UTR-F-serratus_M_contig116:154124..1542391622929056.3755918-UTR-F-serratus_M_contig116:154124..154239Fucus serratus maleUTRF-serratus_M_contig116 154125..154239 -
1690962685.1689749-UTR-F-serratus_M_contig116:154124..1542391690962685.1689749-UTR-F-serratus_M_contig116:154124..154239Fucus serratus maleUTRF-serratus_M_contig116 154125..154239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929056.3158143-CDS-F-serratus_M_contig116:148420..1485671622929056.3158143-CDS-F-serratus_M_contig116:148420..148567Fucus serratus maleCDSF-serratus_M_contig116 148421..148567 -
1690962685.1312058-CDS-F-serratus_M_contig116:148420..1485671690962685.1312058-CDS-F-serratus_M_contig116:148420..148567Fucus serratus maleCDSF-serratus_M_contig116 148421..148567 -
1622929056.3322427-CDS-F-serratus_M_contig116:149761..1499591622929056.3322427-CDS-F-serratus_M_contig116:149761..149959Fucus serratus maleCDSF-serratus_M_contig116 149762..149959 -
1690962685.1388168-CDS-F-serratus_M_contig116:149761..1499591690962685.1388168-CDS-F-serratus_M_contig116:149761..149959Fucus serratus maleCDSF-serratus_M_contig116 149762..149959 -
1622929056.3519058-CDS-F-serratus_M_contig116:153725..1541241622929056.3519058-CDS-F-serratus_M_contig116:153725..154124Fucus serratus maleCDSF-serratus_M_contig116 153726..154124 -
1690962685.1465168-CDS-F-serratus_M_contig116:153725..1541241690962685.1465168-CDS-F-serratus_M_contig116:153725..154124Fucus serratus maleCDSF-serratus_M_contig116 153726..154124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig116.1306.1

>prot_F-serratus_M_contig116.1306.1 ID=prot_F-serratus_M_contig116.1306.1|Name=mRNA_F-serratus_M_contig116.1306.1|organism=Fucus serratus male|type=polypeptide|length=248bp
MSLPSRRNWRRGSISAALIYMAWLSPVSDVHGVVFLSPPRRLQHGAFTSV
SPEVLPARPAFREAGSPDLAEKKSLGQESLLRGPDGGEDKDGEEDNEFNL
NLGRALDHLAEDVPQMFSAPPRLEIFTQDIVLKDPVGELCHGRRLYGALH
TSLRVLSAVAVATPRVRVTSIAFNKDRREVELKWTMIASAPLIGEDAVKI
SAVSVYRIDEHGLIYEHAIDNRIKRDLWEHSHSWMGVHVSGCRPPPS*
back to top

mRNA from alignment at F-serratus_M_contig116:147364..154239-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig116.1306.1 ID=mRNA_F-serratus_M_contig116.1306.1|Name=mRNA_F-serratus_M_contig116.1306.1|organism=Fucus serratus male|type=mRNA|length=6876bp|location=Sequence derived from alignment at F-serratus_M_contig116:147364..154239- (Fucus serratus male)
GCTACTGTAAAAAGTCAAGCGTCTCCACGCAAAATAACCTTACAGAATAC
CTCCGAATAACCTCAAGTCAAGCCCTTACGAACCGTACGAGGGCATTGAA
GCGAACGTGACCCAAATGAGTCTTCCTTCTCGACGAAACTGGCGACGGGG
GTCGATCTCGGCTGCGCTGATATACATGGCGTGGTTGTCACCGGTATCTG
ATGTCCATGGCGTTGTGTTCCTATCTCCCCCTCGTCGACTTCAACACGGT
GCGTTCACCAGCGTCAGCCCTGAAGTACTGCCCGCTCGCCCTGCTTTCAG
GGAAGCAGGATCTCCCGACTTGGCTGAGAAGAAGTCTCTGGGGCAGGAGT
CGCTATTGCGAGGTCCGGACGGCGGAGAGGACAAGGATGGCGAAGAGGAC
AACGAGTTCAATCTCAACCTTGGTCGAGCGTTAGACCACCTCGCAGAAGA
CGTCCCCCAAATGTTCTCGGCGCCGCCGAGGCTTGAAATATTTACGCAGG
ACATCGTGCTGAAGGTGTGTTGTACACTCCAGAGCATTCATCATTCCCGA
CAAACACAACGACATGGGCCAGAACTCCAGCTGTTCTGGAGGTCCAGAAT
TCTGGATGTTATTTTTGTACGACATGCGATTCCTTTTAACCTAAGAGTAT
CTTTATTCTACAGTACAAGCAGTATAACATGTGTACTGTTTGTGGAGCTA
CTTGTCTACAATACCCACAAGCGAATTAATAGAGCCAGCTGATGCGAAGA
AACACCATTCAAAAATCTGAACCCATGGAAACCTTCGGAGCATCTACACG
GTCAGAGAGAAATGGATCTAAAGAAAATTTGGTTGGGAACATCGGCTGTT
ACACAAAACACTATCTAGATCGGATCCAGTTGGGATCCCGGATAACATAC
TTCTGGTATATAATATCGGGGAGAAAACTGCCGTTATGCTGTTACTCTTA
CACTTATCCCCATGTCGGGACACAACAACAGGAACACAAAGCAGGACAGA
CGGTATCGGTCCCACCAAAAACATTTGAATACAGACAGTAAACTGTACCA
GGTAACTATTATTAGACTTTCAAGGGTAGCTCGAAATGAGTACCAAGTAG
GTCTATGTCAAGAGGAGAACCAACACTCAAGTTTTGATCATAATCCAGAA
GACATCATAAATCGTTCTTCGCGTATGTAGTGTTTATATTATTTATAGTA
TTTATATTATTGCGAGCGTTTAGCGAGCTTCTAATCTGTGTGCTGTATCA
ATTTGAGCTCGGGTGTATCAAAATATGTTCCTTTTCGTAATGTTACCCCG
TGCGACATTTGTGCATGACGTACGTATACAAAAGGACTATACGTAGTACG
TAGATGGCGAATGTACTTACTTCCACCTGTGAGAGTAGTTTTGTTAAAAA
AAATCTGAACGCATCTAAACCTTCCGATCAGTCAAAAGGTTTAGGTCGGA
AGATTGGCTGTAGGGACAACCTTCTAAACATCCCCCACAGTCAGGGGGGG
GAAATGTCGAAACGTTTAGGTGGTGCATGGTCTAAGCTGCAAGGATAAAA
ACCTCTTCATGGCATATTTAATCAGGTTCCCCGAGGGTGATTGCGAGCGT
TTAGCGAGCTTCTAATCTGTGTGCTGTATCTGAGCTCGGGTGTATCAAAA
TACGGGGCACTTTGACCAATCATGAAATGTGCCGTATGTTCCTTTTCGTA
ATGTGTCCACCCCAGAATATTATTTTTATGGGAGACAAAAAAGAAATTTC
TGTAGCGAAAGTTTTGTAATATTGCTCGACAAGTTCACTTCGCTTTAGAA
ATTATCGGGAGGTCGGGACTGTAGCTTCCTCCTATCAAAGATCGGCAAAG
AAGAGCAGCAGATTTGGAGGAAATTTATAGAAGCTGTTGAGGTGATGGGC
CCGAACAAGTTGAACGCCGGCAGCGGGAGCAGTTGGATAGGTGGCGCCGG
ACATCAAGCAGAAACGGGCTGTGTGCGAGCGTTCGAGCTGTAAGAGTTCG
GCTCACCATAGAAACGATGTCGCTCTACGCACTCTCTTTGCGATTTACTC
GTAATTAAGTACTAAACGACCCTGTCGCTCGAGGCAAAATTCTCAGGCGC
AAACGAGGAGAGGGAAATATTAATTTCCCTGTTCAGTTGACTACGAGCAG
GATTGGCAACCTTACCCGGTTGATCCATACTCTTGCTATATGTGTGACCA
TATATACATACAGTAGTACCGGTGCATACTTCGTTTTTTTTGCAGTGGTG
GAGGCGGCTTTACGGCCCCAGCGTGAAGAAACAACCCTACGAGCTGTACG
ATGTCTCTTCGTATTTTCGAAAAGAAAAGCTGTGTTTGAAACAGTTTAAA
CTTCGCCATCGAAACAGCAGTGTAATGACTACAAACCACGACGTTGAGCC
AGAAGGACTATCGAGGATGTACAGCAGTAGCAGAACAGAGCACCAAATTG
TTTCTACATATACGATCGAGAATGTACAGTAGGGTCTATGCTAACAACTG
TGTGTTCGAAACTGTTCATAAGGAGAGCGTGAAGGCCATCATCTACACGT
GTACAACAGGAGGAGTATATACTAATAATATCGAGAATATACAGCAGTAG
CTCTACAGAGCACGAAGTTTATTCTACATAGATTATACTAATAACATCAA
GAATGTCCACCAGTAGGGTCTATGCTAAAAACCCTGTGTTCGAAATTGTT
CATGAGGAGAGCGTGAAGGTCTATCATCTACGCGTGTACAAAAGGAACAT
TCTTCAGCAGAACTCTCTTTGCGTAGAATCCTGTGTCACGGAAGGATTTT
AGACAATGCTGCCGGCCACGAGATCAACTCTCTATTAATAGTACAACTGC
CTACAAAAAATACTCGTTGTCACAAAATCTGTACAAATACACTCATCGAT
ACTATCCTGTTTTTCAAAACTACTCTGGCCGGTCGCCCCGGTAGCTCAGA
GGTATCTCGTAACCCTCTGACACGTTGGGACGTGAGTTCGATCCCGGCAA
ACGGGATTTTTCTCACTAAAAACCTAAAATATAAAAATAAAAATGCCCAA
CGGGTGGAGAACGATTTAATCATTAGTACACAAAATTCGACTTCACGGTC
GACGCTGGAAAGGAATGGCTGATCCTTCTCGCGAGAAAAACTAAGGTATA
CACCGCAGAAAGAAGGTGGATGAGAAATCCTGTGTGACCTTCCTCCTGTG
TGACCCCGGCTGGTACGTCCAGTGATGTCCAGAATGAATTTGGAAGAATA
CACAACAAACACACACTCTGCTAGGTATAAAGACGGTTATCTGCGCGCCT
TCGATCCCGCAAGACCTCTCCATTTAAAGTCGTGGGTGCAGCGTGATATG
CACAAGGGTTTCACTGCCAAGTTTCAAAAGCTGCGACCCGGACGTTGTCA
ATTCTGTGGGGAGAGGTGGTTTGCCGCCCAGACGTCCACACAGGCTGCGG
CGGTGCGCCTTCGAGCTCTCGCGGGGAAACGCTACACCACCACAGGGGTG
TTGCGCCGTGATGAATGTACAAGTTTATGTTTGTTTCCTGGTGATAAATC
GGTTTTCCGGTGACAAATCGTGTGGAAACATCAACACCACATTAAACCAA
CACCTGTGTTCAGCTGACGATAGTTACCAAACTATCCTTTAGCGAGCGTA
TAGCGATAGCTAACCTATCTTTTATAGTCGTAAGGCAACGCAGCGAAGGA
GCGGCAGACGCGAAGAAAGAGATGGGTAGACAAAAACAGCGCTATTATAG
GCCACCGCACTGTTCCCCGTCTGCTCAGCGAAAAAGCGCAAAAGAGTCTA
CGAGTAGCTAGGACACGAAATTCCTAACACCGAAACTTCTTTCTATAGTA
TCACCTATAAATAGGGAAAATAAGAAGATGACCGGTACTGTGGCAACATA
ATACATCTTCTGCTGAAAGTTATAGCCTCACTGACACAGGTGGGCCTCGA
TACTTTGGTTCTCCGTAGCAGCACCAGACGGACGTCAACTTTAGATACAA
ACAGTAGTAATATTGCAATACAATACCTTAAATGCTTCATCGTGGAACGT
CATCGCAGCGTGCTTACTCTCCGTAAAGTCCCGAGCGTGTTGCTTTGTTG
GAAATCTCCTACGGTAGAACTGTCTCAACAATACGGACAACATGCACACG
ATCAACCAGGTCCCCCATTTCTACTTTCGTTTGCTTGTTGTTGAGCCTCT
TGTTCTACTGTAGCATTCATCTCTCCCTCAAAAAAGGTCGGGTCGCAAAA
TCTGGCGTATCTATCCACCCTGCAAAACAGGATCCTGTGGGCGAGCTCTG
CCACGGTCGACGCCTCTACGGAGCCTTGCACACGTCGCTTCGCGTCCTGA
GCGCGGTGGCGGTGGCTACACCCCGCGTTCGCGTGACCAGCATCGCGTTC
AACAAGGACAGGAGAGAGGTGGAGCTCAAGTGGACTATGATAGCGAGTGC
CCCGCTCATCGGAGAGGACGCCGTCAAGGTGCGAAACATAATCTACACAG
ATCTGCGGATGTACCTGTAGTGCACAGCTTGTGTCGCCGCCTCGGACAGC
GCTGTTGGGTCGCCAGAGTGGTCCTTGCGTTTTGGTCTCTGATTTTTCTC
GCCGCTCTTCCTGGTAAAATACCGCCCATGCACACGAAAGGTTGTTTGAT
ACGCATCTTGTGAGATGAAGTCAAATACAGCCTTGCACCGTCCGTGGCCA
TTGGAAATGGTCCGTAAAAACTTCCTAGAAAGATCTCCGGAATATGGAAT
TACTCTCTCTTTCTCTCCATCTACTGGGCTGACGTAAGAAACATACATAC
AACAACCAGGGTCTGTCTGCCTTTCTACCCTTTTGCGCGTGCATCTATCG
GCGTGCGGTCGTTCGGCCCGCGGACAATGGTCGCTAAATCCGGTGGAGCT
TATGAGCTCACCTTTTCCTTGACCCCTGCAGGATAATCGGCACTTGGTCG
CCTGGAGCAGGATTATTTTATTTTATACCAAGTATGACCGAGAGAAGTGT
ACAATGAAACAATTTTGTTATTTTTGTTTTTCGCGTTCAGGGTATTGGTT
GCCAACTCGAAAACCTACTGTACGCCTTGGTCAATCCCGCTTTACGATCT
GCTGAACAGTACCTGGTACCTGGTACATGAATATGAATATTAATGGGAGA
AAAGAGAAAAAAAAGAGAAAATGTGCCAGCCTACTATTTACAGTGTACCC
CCCAAAAAAAACATGCTTCTTTCTCTAGAGCTCTAGCCTTCAAGAGAACA
AAGATATAACATATAGCAGATGGCCTGGGGGGGACACTACATTACCGATC
CACATGCCTAGACAGTACTGCGGTCTCGGTTTGTCTCATGCCCATATGGG
GTTCCTTCAGCTACTAATAGATTGGTAAGATTAATAGCCTGTTAGACTAA
ACGACGCCGCTTCGACGCCCTCCCCCCATCTTCCCCCCTTGATGAACAAT
ACCAGGGAGGGGCACTAGAAGAACGGTGATATACCCAAAAGATTGCCCAC
AGGATAAATGTGGTTGAAACCTTTTTTTGACATCGGTGAACGAACGGCAA
CCAAATACCTCAAGCGTGTAACATTTAGACCAATCCCTTACGCCTCGCGG
CTGGCGTTTCCGCCTTCTCTTGAACCATCGCCATGTTCGGTACTTTGCTT
TCGTTTCCCTCGAGCCGAGAAGATTAGCGCCGTGTCGGTGTACAGGATCG
ACGAGCACGGACTGATCTATGAGCACGCCATCGACAACCGAATCAAGCGG
GATCTATGGGAACATTCGCATTCCTGGATGGGCGTGCACGTATCGGGGTG
CCGCCCACCGCCCTCGTAGCTCGCGCGATCGTGCCTTATTCTTGAGACGC
CCGGTCTTTGTATCCAGAAGGAAGGAAGAGGAGACGAGGGTCACCGGAAC
GTTCCTGCGCGCCGCGGTTGTCGACCAGGGTTGAGATGGTCGCTGCTAGC
AACCGCTTTGACCGCTTTGGGGAAGTGCGGGTCAGATTGAAGGCGATAAT
AATTCCCGCCGCAAATGAATATTTCCATCCTCATGACCATAGGTTTGGAT
ACTAAAACCAATGGTGGAAAATCATCTGTAGCCGAAGTTAACCGAGGAGC
TGCTTGTTACGGGTAGCTGGCAGCATTTTAGCCGGAGCCACAGAGTGGTG
CGTTGACGCTAGTTCTATGTTGTGTTTTTGGTACGGCGTACCGAATAAAA
TGAGAAGAGACAATAAATCTTTTGGTAAAGGAGGTTCCGGCGAGGTCAGG
GCACCACGAGCTTTTCCGTGTGCCAAAATAGATTTTTCTAGAGAGTTCGA
GTTTTTGTCGGTGCACATCGCAGCAGGGGGCGCTAAGAACGTACTTGGAG
ATGTACCCATTAGTAATCGTTGATAGACATTGATAGACCTAAGCTGGGCT
AACGAAGTACACTGTAGTACGAAGTATGATTCGTGTTGCGCGACTGAAAG
GATATCACGAATCATGTTCATAGAGCTAGGCATAAACATAATATGTGTTC
GAGATGTTTGTGAAAAAGAGGGAAATAATGATCAAGTAATGGCTTGTGGC
CGGTGCCTCACTGGCGGGCGGATTGTTAGTCGATCCAACCGATGGCTTTT
AAGGGATGAACTTTACCCACGAAAATATGGCAGCCTCACGAGAGGGATTG
TGCTTGGTGTTGGTTTGGTTGGGGAACAGAAACACAATGAATTGATGGGG
CTCAAGCACACATGTGCTCTCTGATGAACTACTCAAGTATCATACAGGTA
TGCAACAAATCAAGTGAGGAAACCTATCCTGGTCCCCTATTGGTCAACAT
AGACCTACCCTATCCGCATCGTGAGTGACCAACGATCAGCTTTGATTGAC
TAAATGGATATGGTGCATACACGGAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig116:147364..154239-

>mRNA_F-serratus_M_contig116.1306.1 ID=mRNA_F-serratus_M_contig116.1306.1|Name=mRNA_F-serratus_M_contig116.1306.1|organism=Fucus serratus male|type=CDS|length=1488bp|location=Sequence derived from alignment at F-serratus_M_contig116:147364..154239- (Fucus serratus male)
ATGAGTCTTCCTTCTCGACGAAACTGGCGACGGGGGTCGATCTCGGCTGC
GCTGATATACATGGCGTGGTTGTCACCGGTATCTGATGTCCATGGCGTTG
TGTTCCTATCTCCCCCTCGTCGACTTCAACACGGTGCGTTCACCAGCGTC
AGCCCTGAAGTACTGCCCGCTCGCCCTGCTTTCAGGGAAGCAGGATCTCC
CGACTTGGCTGAGAAGAAGTCTCTGGGGCAGGAGTCGCTATTGCGAGGTC
CGGACGGCGGAGAGGACAAGGATGGCGAAGAGGACAACGAGTTCAATCTC
AACCTTGGTCGAGCGTTAGACCACCTCGCAGAAGACGTCCCCCAAATGTT
CTCGGCGCCGCCGAGGCTTGAAATATTTACGCAGGACATCGTGCTGAAGA
TGAGTCTTCCTTCTCGACGAAACTGGCGACGGGGGTCGATCTCGGCTGCG
CTGATATACATGGCGTGGTTGTCACCGGTATCTGATGTCCATGGCGTTGT
GTTCCTATCTCCCCCTCGTCGACTTCAACACGGTGCGTTCACCAGCGTCA
GCCCTGAAGTACTGCCCGCTCGCCCTGCTTTCAGGGAAGCAGGATCTCCC
GACTTGGCTGAGAAGAAGTCTCTGGGGCAGGAGTCGCTATTGCGAGGTCC
GGACGGCGGAGAGGACAAGGATGGCGAAGAGGACAACGAGTTCAATCTCA
ACCTTGGTCGAGCGTTAGACCACCTCGCAGAAGACGTCCCCCAAATGTTC
TCGGCGCCGCCGAGGCTTGAAATATTTACGCAGGACATCGTGCTGAAGGA
TCCTGTGGGCGAGCTCTGCCACGGTCGACGCCTCTACGGAGCCTTGCACA
CGTCGCTTCGCGTCCTGAGCGCGGTGGCGGTGGCTACACCCCGCGTTCGC
GTGACCAGCATCGCGTTCAACAAGGACAGGAGAGAGGTGGAGCTCAAGTG
GACTATGATAGCGAGTGCCCCGCTCATCGGAGAGGACGCCGTCAAGGATC
CTGTGGGCGAGCTCTGCCACGGTCGACGCCTCTACGGAGCCTTGCACACG
TCGCTTCGCGTCCTGAGCGCGGTGGCGGTGGCTACACCCCGCGTTCGCGT
GACCAGCATCGCGTTCAACAAGGACAGGAGAGAGGTGGAGCTCAAGTGGA
CTATGATAGCGAGTGCCCCGCTCATCGGAGAGGACGCCGTCAAGATTAGC
GCCGTGTCGGTGTACAGGATCGACGAGCACGGACTGATCTATGAGCACGC
CATCGACAACCGAATCAAGCGGGATCTATGGGAACATTCGCATTCCTGGA
TGGGCGTGCACGTATCGGGGTGCCGCCCACCGCCCTCGTAGATTAGCGCC
GTGTCGGTGTACAGGATCGACGAGCACGGACTGATCTATGAGCACGCCAT
CGACAACCGAATCAAGCGGGATCTATGGGAACATTCGCATTCCTGGATGG
GCGTGCACGTATCGGGGTGCCGCCCACCGCCCTCGTAG
back to top