mRNA_F-serratus_M_contig116.1305.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig116.1305.1
Unique NamemRNA_F-serratus_M_contig116.1305.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig116.1305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig116contigF-serratus_M_contig116:118801..119356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size556
Cds size390
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig116.1305.1prot_F-serratus_M_contig116.1305.1Fucus serratus malepolypeptideF-serratus_M_contig116 118805..119194 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929055.7667148-UTR-F-serratus_M_contig116:118800..1188041622929055.7667148-UTR-F-serratus_M_contig116:118800..118804Fucus serratus maleUTRF-serratus_M_contig116 118801..118804 +
1690962684.9181592-UTR-F-serratus_M_contig116:118800..1188041690962684.9181592-UTR-F-serratus_M_contig116:118800..118804Fucus serratus maleUTRF-serratus_M_contig116 118801..118804 +
1622929055.8014066-UTR-F-serratus_M_contig116:119194..1193561622929055.8014066-UTR-F-serratus_M_contig116:119194..119356Fucus serratus maleUTRF-serratus_M_contig116 119195..119356 +
1690962684.9567316-UTR-F-serratus_M_contig116:119194..1193561690962684.9567316-UTR-F-serratus_M_contig116:119194..119356Fucus serratus maleUTRF-serratus_M_contig116 119195..119356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929055.7821822-CDS-F-serratus_M_contig116:118804..1191941622929055.7821822-CDS-F-serratus_M_contig116:118804..119194Fucus serratus maleCDSF-serratus_M_contig116 118805..119194 +
1690962684.9398305-CDS-F-serratus_M_contig116:118804..1191941690962684.9398305-CDS-F-serratus_M_contig116:118804..119194Fucus serratus maleCDSF-serratus_M_contig116 118805..119194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig116.1305.1

>prot_F-serratus_M_contig116.1305.1 ID=prot_F-serratus_M_contig116.1305.1|Name=mRNA_F-serratus_M_contig116.1305.1|organism=Fucus serratus male|type=polypeptide|length=130bp
MLSTTKLSATTLLSLPLAFHHPPEGHQVGARKGRTPGNTILSQPYCHRVS
TYRPNRKGSQLAAPLEGEPGPTPAGKTLPHSYPETRFRRESTVQYNVGEK
TTFLYTLHLIHLSCQHACRDTKQNRQETR*
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mRNA from alignment at F-serratus_M_contig116:118801..119356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig116.1305.1 ID=mRNA_F-serratus_M_contig116.1305.1|Name=mRNA_F-serratus_M_contig116.1305.1|organism=Fucus serratus male|type=mRNA|length=556bp|location=Sequence derived from alignment at F-serratus_M_contig116:118801..119356+ (Fucus serratus male)
CCCGATGCTGAGTACTACCAAGCTCTCCGCGACAACACTGCTCTCCTTGC
CTCTCGCGTTCCACCACCCTCCCGAAGGGCACCAAGTTGGAGCTCGGAAG
GGGCGCACACCTGGGAACACCATCCTCAGCCAACCATATTGCCACCGCGT
CTCAACCTACAGGCCGAATCGCAAAGGCAGCCAGTTGGCTGCACCTCTCG
AGGGCGAACCCGGTCCTACACCCGCCGGAAAGACCCTCCCACACTCATAC
CCCGAAACCAGGTTTCGGAGGGAATCAACAGTACAGTATAATGTCGGGGA
GAAAACCACTTTTTTATATACTCTACACTTGATACATCTTAGTTGTCAGC
ATGCATGCAGGGACACTAAGCAAAACAGACAAGAGACACGATGAGCCTAG
AGTACAGCTCAGTTTGTAACATTGCATTGGGTCTAGCATCGGAGGGATGT
CGATAAAGGAAATCTTCCAGTCGTCGGTGTAGAAAGTTAACAGCAGTACT
TGGTAAATCCCATGGAGAGTTTTTGTCCTTGCAACCTTTCTCAACCTTTA
TGTTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig116:118801..119356+

>mRNA_F-serratus_M_contig116.1305.1 ID=mRNA_F-serratus_M_contig116.1305.1|Name=mRNA_F-serratus_M_contig116.1305.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig116:118801..119356+ (Fucus serratus male)
ATGCTGAGTACTACCAAGCTCTCCGCGACAACACTGCTCTCCTTGCCTCT
CGCGTTCCACCACCCTCCCGAAGGGCACCAAGTTGGAGCTCGGAAGGGGC
GCACACCTGGGAACACCATCCTCAGCCAACCATATTGCCACCGCGTCTCA
ACCTACAGGCCGAATCGCAAAGGCAGCCAGTTGGCTGCACCTCTCGAGGG
CGAACCCGGTCCTACACCCGCCGGAAAGACCCTCCCACACTCATACCCCG
AAACCAGGTTTCGGAGGGAATCAACAGTACAGTATAATGTCGGGGAGAAA
ACCACTTTTTTATATACTCTACACTTGATACATCTTAGTTGTCAGCATGC
ATGCAGGGACACTAAGCAAAACAGACAAGAGACACGATGAATGCTGAGTA
CTACCAAGCTCTCCGCGACAACACTGCTCTCCTTGCCTCTCGCGTTCCAC
CACCCTCCCGAAGGGCACCAAGTTGGAGCTCGGAAGGGGCGCACACCTGG
GAACACCATCCTCAGCCAACCATATTGCCACCGCGTCTCAACCTACAGGC
CGAATCGCAAAGGCAGCCAGTTGGCTGCACCTCTCGAGGGCGAACCCGGT
CCTACACCCGCCGGAAAGACCCTCCCACACTCATACCCCGAAACCAGGTT
TCGGAGGGAATCAACAGTACAGTATAATGTCGGGGAGAAAACCACTTTTT
TATATACTCTACACTTGATACATCTTAGTTGTCAGCATGCATGCAGGGAC
ACTAAGCAAAACAGACAAGAGACACGATGA
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