mRNA_F-serratus_M_contig1.30.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1.30.1
Unique NamemRNA_F-serratus_M_contig1.30.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1contigF-serratus_M_contig1:927162..927547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size386
Cds size384
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.5992925-UTR-F-serratus_M_contig1:927161..9271631622928772.5992925-UTR-F-serratus_M_contig1:927161..927163Fucus serratus maleUTRF-serratus_M_contig1 927162..927163 +
1690962561.0310552-UTR-F-serratus_M_contig1:927161..9271631690962561.0310552-UTR-F-serratus_M_contig1:927161..927163Fucus serratus maleUTRF-serratus_M_contig1 927162..927163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.6210194-CDS-F-serratus_M_contig1:927163..9275471622928772.6210194-CDS-F-serratus_M_contig1:927163..927547Fucus serratus maleCDSF-serratus_M_contig1 927164..927547 +
1690962561.0494528-CDS-F-serratus_M_contig1:927163..9275471690962561.0494528-CDS-F-serratus_M_contig1:927163..927547Fucus serratus maleCDSF-serratus_M_contig1 927164..927547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1.30.1prot_F-serratus_M_contig1.30.1Fucus serratus malepolypeptideF-serratus_M_contig1 927164..927547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1.30.1

>prot_F-serratus_M_contig1.30.1 ID=prot_F-serratus_M_contig1.30.1|Name=mRNA_F-serratus_M_contig1.30.1|organism=Fucus serratus male|type=polypeptide|length=128bp
MLYTDDAYIVSGSPRGWDRMMAVLVEVFGACSLIIPEIKTKTICMPIPLV
SATQIVFYATGQHYYRLVASFTYSGGAVSEIPNLSAEVDREIRARWMSSR
RCTRERYVAVRSQVCCAPEDPDGKILR*
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mRNA from alignment at F-serratus_M_contig1:927162..927547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1.30.1 ID=mRNA_F-serratus_M_contig1.30.1|Name=mRNA_F-serratus_M_contig1.30.1|organism=Fucus serratus male|type=mRNA|length=386bp|location=Sequence derived from alignment at F-serratus_M_contig1:927162..927547+ (Fucus serratus male)
GGATGCTGTATACTGACGACGCGTACATTGTGTCGGGGTCCCCGCGCGGG
TGGGATCGCATGATGGCGGTCTTAGTCGAAGTGTTCGGTGCATGTAGTCT
GATCATCCCTGAGATCAAGACGAAGACCATCTGCATGCCGATTCCGCTTG
TGTCGGCAACGCAGATAGTCTTCTATGCTACGGGACAACATTATTACCGC
CTGGTAGCCTCCTTCACCTATTCGGGGGGCGCCGTCAGCGAAATTCCAAA
CCTGTCTGCCGAGGTAGACCGGGAGATCCGTGCGAGATGGATGAGCTCCA
GGCGTTGCACGCGAGAACGGTATGTGGCCGTCCGAAGTCAAGTCTGCTGT
GCACCTGAAGATCCGGATGGTAAAATACTACGGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1:927162..927547+

>mRNA_F-serratus_M_contig1.30.1 ID=mRNA_F-serratus_M_contig1.30.1|Name=mRNA_F-serratus_M_contig1.30.1|organism=Fucus serratus male|type=CDS|length=768bp|location=Sequence derived from alignment at F-serratus_M_contig1:927162..927547+ (Fucus serratus male)
ATGCTGTATACTGACGACGCGTACATTGTGTCGGGGTCCCCGCGCGGGTG
GGATCGCATGATGGCGGTCTTAGTCGAAGTGTTCGGTGCATGTAGTCTGA
TCATCCCTGAGATCAAGACGAAGACCATCTGCATGCCGATTCCGCTTGTG
TCGGCAACGCAGATAGTCTTCTATGCTACGGGACAACATTATTACCGCCT
GGTAGCCTCCTTCACCTATTCGGGGGGCGCCGTCAGCGAAATTCCAAACC
TGTCTGCCGAGGTAGACCGGGAGATCCGTGCGAGATGGATGAGCTCCAGG
CGTTGCACGCGAGAACGGTATGTGGCCGTCCGAAGTCAAGTCTGCTGTGC
ACCTGAAGATCCGGATGGTAAAATACTACGGTAGATGCTGTATACTGACG
ACGCGTACATTGTGTCGGGGTCCCCGCGCGGGTGGGATCGCATGATGGCG
GTCTTAGTCGAAGTGTTCGGTGCATGTAGTCTGATCATCCCTGAGATCAA
GACGAAGACCATCTGCATGCCGATTCCGCTTGTGTCGGCAACGCAGATAG
TCTTCTATGCTACGGGACAACATTATTACCGCCTGGTAGCCTCCTTCACC
TATTCGGGGGGCGCCGTCAGCGAAATTCCAAACCTGTCTGCCGAGGTAGA
CCGGGAGATCCGTGCGAGATGGATGAGCTCCAGGCGTTGCACGCGAGAAC
GGTATGTGGCCGTCCGAAGTCAAGTCTGCTGTGCACCTGAAGATCCGGAT
GGTAAAATACTACGGTAG
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