mRNA_F-serratus_M_contig1159.1296.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1159.1296.1
Unique NamemRNA_F-serratus_M_contig1159.1296.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1159.1296.1 vs. uniprot
Match: A0A6H5LNR6_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNR6_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.690e-63
Identity = 114/174 (65.52%), Postives = 142/174 (81.61%), Query Frame = 1
Query:   31 GDRALIAKKAARQMAERKKLEDTPFQTKAMREIQRLQKATVYRTSIIKIQFPDRVVLQATFSSTEGVKDLVRLVRESFGESYRERKFELYVSPPRMVLKEASSLSEAGLVPAALVYVSWKDMPPSGEAEGAYLKTELVGS---GEGGSSVARPVGVSLEAGGGGAEASKFGAGS 543
            GD  L+AKK ARQ+AERKK ++ PFQTKAMR+I+RLQK+TVYRT++IK+QFPDRVVLQ+TF+STEGVKDL+ +V+ S  +    R FELYVSPPR+VLK ASSLS+AGLVPAALVYVSW+++PP+GEAEG YLK EL+     G   ++ ARPVGV+L+ G  G+E SK G GS
Sbjct:  251 GDGGLLAKKVARQIAERKKQDEVPFQTKAMRDIERLQKSTVYRTTVIKVQFPDRVVLQSTFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGEAEGGYLKRELLSGTTPGTAAAASARPVGVALDGGAKGSEESKTGGGS 424          
BLAST of mRNA_F-serratus_M_contig1159.1296.1 vs. uniprot
Match: A0A7S2V2I9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2I9_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.380e-30
Identity = 66/135 (48.89%), Postives = 90/135 (66.67%), Query Frame = 1
Query:   28 AGDRALIAKKAARQMAERKKLEDTPFQTKAMREIQRLQKATVYRTSIIKIQFPDRVVLQATFSSTEGVKDLVRLVRESFGESYRERKFELYVSPPRMVLKEASSLSEAGLVPAALVYVSWKDMPPSGEAEGAYLK 432
            A D  LIA+   ++M E+KK E  PF+T+AMRE++ L+KA V+  ++I++QFPDRVV+QA F   E V  ++ LVR++    +  R F LYVSPP+  L     L+  GLVPAALVY+SW+  PP G  EG YLK
Sbjct:  236 ASDSTLIARSMHKKMEEQKKREAAPFRTRAMRELEALEKAKVFAFTVIRVQFPDRVVIQAHFHPRESVGTVIDLVRQNLSPDHANRPFHLYVSPPKTKLAAEDLLTAQGLVPAALVYLSWESTPPEGP-EGGYLK 369          
BLAST of mRNA_F-serratus_M_contig1159.1296.1 vs. uniprot
Match: D7FME0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME0_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.590e-29
Identity = 58/85 (68.24%), Postives = 72/85 (84.71%), Query Frame = 1
Query:   31 GDRALIAKKAARQMAERKKLEDTPFQTKAMREIQRLQKATVYRTSIIKIQFPDRVVLQATFSSTEGVKDLVRLVRESFGESYRER 285
            GD  L+AKK ARQ+AERKK ++ PFQTKAMREI+RLQK+TVYRT++IK+QFPDRVVLQATF+STEGVKDL+ +V+ S  +    R
Sbjct:   10 GDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAAR 94          
BLAST of mRNA_F-serratus_M_contig1159.1296.1 vs. uniprot
Match: D7FT67_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT67_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 8.870e-25
Identity = 61/94 (64.89%), Postives = 74/94 (78.72%), Query Frame = 1
Query:  277 RERKFELYVSPPRMVLKEASSLSEAGLVPAALVYVSWKDMPPSGEAEGAYLKTELV-----GSGEGGSSVARPVGVSLEAGGGGAEASKFGAGS 543
            R  +FELYVSPPR+VLK ASSLS+AGLVPAALVYVSW+++PP+GEAEGAYLK ELV     G+    ++ ARPVGV+L+ G  G+E SK G GS
Sbjct:  218 RNIQFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGEAEGAYLKRELVSGSTPGAAAAAAASARPVGVALDGGAKGSEESKTGGGS 311          
BLAST of mRNA_F-serratus_M_contig1159.1296.1 vs. uniprot
Match: A0A6A4ACN2_9STRA (UBX domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4ACN2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.430e-24
Identity = 56/127 (44.09%), Postives = 88/127 (69.29%), Query Frame = 1
Query:   73 AERKKLEDTP-FQTKAMREIQRLQKATVYRTSIIKIQFPDRVVLQATFSSTEGVKDLVRLVRESFGESYRERKFELYVSPPRMVLKEASSLSEAGLVPAALVYVSWKDMPPSGEAE--GAYLKTELV 444
            A R+++E T  F+T+AMRE+  L++  V++T++I++QFPDR V+QA+F   E ++D++  V E  GE Y+  KF LYV+PP   L  A++L+E  LVPAAL Y+SW ++PP  +    G Y +++LV
Sbjct:  440 ARREEMEKTKNFRTQAMRELDELKRKKVFQTALIRVQFPDRAVMQASFHPNETIQDVMDHVTECLGEQYKGGKFYLYVTPPTQKLVPANTLAELNLVPAALTYLSWLELPPQADMASIGFYFRSDLV 566          
BLAST of mRNA_F-serratus_M_contig1159.1296.1 vs. uniprot
Match: K3WKD5_GLOUD (UBX domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKD5_GLOUD)

HSP 1 Score: 108 bits (271), Expect = 2.390e-24
Identity = 58/116 (50.00%), Postives = 80/116 (68.97%), Query Frame = 1
Query:  103 FQTKAMREIQRLQKATVYRTSIIKIQFPDRVVLQATFSSTEGVKDLVRLVRESFGESYRERKFELYVSPPRMVLKEASSLSEAGLVPAALVYVSWKDMPPSGE--AEGAYLKTELV 444
            F+T+AMRE+  L+K  V++T++I++QFPDRVVLQA F   E V+D+V  VRES  +++   +F LY++PP   L    +L+E  LVPAAL Y+SW D  PS E  A G YL+ ELV
Sbjct:  449 FRTQAMRELDELKKKKVFQTTLIRVQFPDRVVLQAAFHPNETVQDVVDHVRESLQQAFSGNQFYLYITPPTQKLDPRKTLAELNLVPAALTYLSWIDALPSLEQSASGFYLRDELV 564          
BLAST of mRNA_F-serratus_M_contig1159.1296.1 vs. uniprot
Match: A0A7S2RJ30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJ30_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.490e-24
Identity = 59/136 (43.38%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   31 GDRALIAKKAARQMAERKKLEDTPFQTKAMREIQRLQKATVYRTSIIKIQFPDRVVLQATFSSTEGVKDLVRLVRESF------GESYRERKFELYVSPPRMVLKEAS----SLSEAGLVPAALVYVSWKDMPPSG 408
            GD  L+AK  A +MA+ K+ ED PFQTKAMRE+ +L+KA VY  +I+++QFPDR V+ A F   E ++ +  +V +                F+L+++PPR VL ++S    SL+E GLVPA ++Y+SWK  PP G
Sbjct:  113 GDAGLVAKAMAAKMAQAKRAEDVPFQTKAMRELAQLEKARVYERTIVRVQFPDRTVVTANFHPHETIQAVAAVVSDLLIRPQGTDPGPAAPDFDLFITPPRQVLTQSSHSSKSLTELGLVPACVIYLSWKS-PPQG 247          
BLAST of mRNA_F-serratus_M_contig1159.1296.1 vs. uniprot
Match: G4YTH0_PHYSP (UBX domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YTH0_PHYSP)

HSP 1 Score: 107 bits (266), Expect = 1.060e-23
Identity = 54/125 (43.20%), Postives = 85/125 (68.00%), Query Frame = 1
Query:   79 RKKLEDTP-FQTKAMREIQRLQKATVYRTSIIKIQFPDRVVLQATFSSTEGVKDLVRLVRESFGESYRERKFELYVSPPRMVLKEASSLSEAGLVPAALVYVSWKDMPPSGEAE--GAYLKTELV 444
            R+++E T  F+T+AMRE+  L++  V++T++I++QFPDR V+QA+F   E ++D++  V E   E ++  KF LYV+PP   L  A +L++  LVPAAL Y+SW +MPP  E    G Y +++LV
Sbjct:  412 REEMEKTKNFRTQAMRELDELKRKKVFQTALIRVQFPDRAVMQASFHPNETIQDVMDHVTECLAEQFKGGKFYLYVTPPTQKLAPAKTLADLNLVPAALTYLSWSEMPPQAEVPSIGFYFRSDLV 536          
BLAST of mRNA_F-serratus_M_contig1159.1296.1 vs. uniprot
Match: H3GCB5_PHYRM (UBX domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GCB5_PHYRM)

HSP 1 Score: 106 bits (265), Expect = 1.520e-23
Identity = 52/125 (41.60%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   79 RKKLEDTP-FQTKAMREIQRLQKATVYRTSIIKIQFPDRVVLQATFSSTEGVKDLVRLVRESFGESYRERKFELYVSPPRMVLKEASSLSEAGLVPAALVYVSWKDMPPSGEAEGA--YLKTELV 444
            R+++E T  F+T+AMRE+  L++  V++T++I++QFPDR V+QA+F   E ++D++  V E  G+ Y+  KF LYV+PP   L    +L+E  L+PAAL Y+SW ++PP  +A G   Y +++L+
Sbjct:  379 REEMEKTKNFRTQAMRELDELKRKKVFQTALIRVQFPDRAVMQASFHPNETIQDVMNHVTECLGDQYKGNKFYLYVTPPTQKLAATKTLAELNLIPAALSYLSWLEVPPQTDAAGVGFYFRSDLL 503          
BLAST of mRNA_F-serratus_M_contig1159.1296.1 vs. uniprot
Match: A0A835YJ49_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ49_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.470e-23
Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = 1
Query:   34 DRALIAKKAARQMAERKKLEDTPFQTKAMREIQRLQKATVYRTSIIKIQFPDRVVLQATFSSTEGVKDLVRLVRESFGESYRER-KFELYVSPPRMVLKEASSLSEAGLVPAALVYVSWK 390
            D+ L+A++ ARQ+AERK+ E TPFQT+AMRE++RLQKA  Y  ++I++Q PDR V+QA F   E V D+   V  +          F LYV+PPR  L   + L++ GLVPAAL+Y+SW+
Sbjct:  549 DKVLLAQRVARQLAERKREEATPFQTRAMRELERLQKAKAYSHALIRVQLPDRSVVQAKFLPRETVGDVAAAVSAALRAGVSGACPFALYVTPPRRTLAADAVLADEGLVPAALLYLSWQ 668          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1159.1296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LNR6_9PHAE1.690e-6365.52UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2V2I9_9STRA1.380e-3048.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FME0_ECTSI1.590e-2968.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT67_ECTSI8.870e-2564.89PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6A4ACN2_9STRA1.430e-2444.09UBX domain-containing protein n=4 Tax=Phytophthora... [more]
K3WKD5_GLOUD2.390e-2450.00UBX domain-containing protein n=1 Tax=Globisporang... [more]
A0A7S2RJ30_9STRA5.490e-2443.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
G4YTH0_PHYSP1.060e-2343.20UBX domain-containing protein n=1 Tax=Phytophthora... [more]
H3GCB5_PHYRM1.520e-2341.60UBX domain-containing protein n=1 Tax=Phytophthora... [more]
A0A835YJ49_9STRA3.470e-2348.33UBX domain-containing protein n=1 Tax=Tribonema mi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1159contigF-serratus_M_contig1159:16898..25692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue2.4e-21
Seed eggNOG ortholog65071.PYU1_T005427
Preferred nameASPSCR1
KEGG koko:K15627
KEGG Pathwayko05202,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009893,GO:0009898,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010827,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019898,GO:0019899,GO:0019941,GO:0022411,GO:0030154,GO:0030163,GO:0030433,GO:0030435,GO:0030659,GO:0031090,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033036,GO:0033500,GO:0033554,GO:0034613,GO:0034762,GO:0034976,GO:0035265,GO:0036503,GO:0040007,GO:0042221,GO:0042592,GO:0042593,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0043933,GO:0043934,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0046324,GO:0046907,GO:0048471,GO:0048518,GO:0048522,GO:0048589,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098552,GO:0098562,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.TUG ubiquitin-like domain
EggNOG OGs1MEUG@121069,KOG2699@1,KOG2699@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons5
Model size548
Cds size546
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1159.1296.1prot_F-serratus_M_contig1159.1296.1Fucus serratus malepolypeptideF-serratus_M_contig1159 16898..25692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.97927-CDS-F-serratus_M_contig1159:16897..169911622929053.97927-CDS-F-serratus_M_contig1159:16897..16991Fucus serratus maleCDSF-serratus_M_contig1159 16898..16991 +
1690962684.1343813-CDS-F-serratus_M_contig1159:16897..169911690962684.1343813-CDS-F-serratus_M_contig1159:16897..16991Fucus serratus maleCDSF-serratus_M_contig1159 16898..16991 +
1622929053.9943104-CDS-F-serratus_M_contig1159:19645..197251622929053.9943104-CDS-F-serratus_M_contig1159:19645..19725Fucus serratus maleCDSF-serratus_M_contig1159 19646..19725 +
1690962684.1442006-CDS-F-serratus_M_contig1159:19645..197251690962684.1442006-CDS-F-serratus_M_contig1159:19645..19725Fucus serratus maleCDSF-serratus_M_contig1159 19646..19725 +
1622929054.0079525-CDS-F-serratus_M_contig1159:24424..245381622929054.0079525-CDS-F-serratus_M_contig1159:24424..24538Fucus serratus maleCDSF-serratus_M_contig1159 24425..24538 +
1690962684.1521668-CDS-F-serratus_M_contig1159:24424..245381690962684.1521668-CDS-F-serratus_M_contig1159:24424..24538Fucus serratus maleCDSF-serratus_M_contig1159 24425..24538 +
1622929054.0260603-CDS-F-serratus_M_contig1159:25131..252491622929054.0260603-CDS-F-serratus_M_contig1159:25131..25249Fucus serratus maleCDSF-serratus_M_contig1159 25132..25249 +
1690962684.1621342-CDS-F-serratus_M_contig1159:25131..252491690962684.1621342-CDS-F-serratus_M_contig1159:25131..25249Fucus serratus maleCDSF-serratus_M_contig1159 25132..25249 +
1622929054.039607-CDS-F-serratus_M_contig1159:25552..256921622929054.039607-CDS-F-serratus_M_contig1159:25552..25692Fucus serratus maleCDSF-serratus_M_contig1159 25553..25692 +
1690962684.173891-CDS-F-serratus_M_contig1159:25552..256921690962684.173891-CDS-F-serratus_M_contig1159:25552..25692Fucus serratus maleCDSF-serratus_M_contig1159 25553..25692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1159.1296.1

>prot_F-serratus_M_contig1159.1296.1 ID=prot_F-serratus_M_contig1159.1296.1|Name=mRNA_F-serratus_M_contig1159.1296.1|organism=Fucus serratus male|type=polypeptide|length=182bp
MEGVTTEETAGDRALIAKKAARQMAERKKLEDTPFQTKAMREIQRLQKAT
VYRTSIIKIQFPDRVVLQATFSSTEGVKDLVRLVRESFGESYRERKFELY
VSPPRMVLKEASSLSEAGLVPAALVYVSWKDMPPSGEAEGAYLKTELVGS
GEGGSSVARPVGVSLEAGGGGAEASKFGAGSR
back to top

mRNA from alignment at F-serratus_M_contig1159:16898..25692+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1159.1296.1 ID=mRNA_F-serratus_M_contig1159.1296.1|Name=mRNA_F-serratus_M_contig1159.1296.1|organism=Fucus serratus male|type=mRNA|length=8795bp|location=Sequence derived from alignment at F-serratus_M_contig1159:16898..25692+ (Fucus serratus male)
ATGGAAGGCGTTACGACCGAGGAGACGGCGGGAGATCGTGCACTGATCGC CAAAAAGGCGGCGCGGCAGATGGCGGAGAGGAAAAAACTCGAGGGTGAGA CGTTTTTTTAAAGGGAAAAAGAGTATGTGCTGACGCGTCTACAAATCTTT CATTTTCCCGTCACATTTTGTTGTTAAAAAATGTACGTATGTATGTAACG TCATCACATATAGCAGAGTATGGATCAACCAGGTAAGGTTGCTAATCCTG CTCGTGGTCAGCTGAACAGGGAAAATGAATACCCCCTGTCCCCGTGCGTG CCTGAGAACTTGGTCCCGCGAGACTGGTTCAGCCGTCCCGTCCCGCGTCA GCCTGCTCATCTCCATACTAAGGCTGGATCTGGTGCTTACTTACGGGATT CTTCCCGAGTTCCGCGGCGGCGTCCATTATGAAACCGCCTTACGCCATCG GGTCAGTCTCGAGTTTATCGGGTCACGCAATTACGTACCGATGGCGTTCA CTGCCGAGAGTCCGTCGGCACAGGGCCAGTAAATTTCGAGGTAGTTCCGA ACGAGTGCTGCCTTGACAGATCACCATGGATCAATTAATATGCGCCTCTC TTTCCCACACCCACTAATGGTATGAAGTGGGCACGTTGAAGTACCGGCGG CCAGTATGTGTCTGCGATTACCACCAAAATTACTTTAGTCTCCACGATTA TTTGAACAAAACATGCTCATTTACGTTACTTGTACTACTACTATAATACT ACTGCTACGTCATTCTTGTAAAATGCCACGTGGACGAGTAGGAGCATGGC ATGGCCTCGCATCAACGTTGAGAGCTGCGTAGCACCGCTAGAAGTGAAGC TGTCCAGTAGTACAGCATGCCCCAGGTAACGTTCATGTACAGAAGTACTT ACTTTGTAACGTACTCGGAGTACAGGTACTTGTGAATGTGCTTTTTTTGT ACACAAACGTCCCGTGCCTGAAACACAAAGTACTCGATCGCTGTAGCTGG ACCCAAAATACCGGTACTTGATTGGCTGCACGCACGTGCATCAGCGTCAA GCGTTCATATATAGTACATAAGGCACAGTGATAACCCCTACAAGTACGGT GGGACCTCGACGTTCGGATGTTTTGAGGGGACTGGTTTGCGCTATTGATC CAAGTAGTTGATACAGTCACATGCGAAGTCGTTATGAAAGTACTGAGTAG AGTACCAGTGCATGCCGTACAAGTATGGATACAGTACCTCTACTTGTTTC TTGTTTGTGCGGTGGGTGTGCCAGAGTTACATGAAGGCACGAAACGAATG ATACGAGTGCTCCAGCTAGAGCACTCAACCGAGTACACAAGTACGAAGTG CCGGGTGCGACATATAAAAACACCTGTAGCAGTCCTTATGCTGGTTCTAC CAATCGGGTGAAAACTTGATACAGTACTGTGATTTTGTGACAAGAACGTG GCACTGCTTTACTCCATCCTGCGGAACAGTCTCCTGAAAGGGTGGCCCAT TTCTTCAAAGGGTGATGTCTGCTTGGCAAAGCCCAAAGCTACGAGGTGCA CCGGCATGTCCGTTGCACTTTCTCTGCGTCCATCCATGCCTAGCTGGGTG CTAGAGCTAAGATCTCGACGTGCTTAATATCCTCGGGAACGACAGCCGCT CGATGTATCATGCACTCCCGTTGCATTCAAACGACCTTCGCAAAGTGGGA TGAAGATATTTAGACGCTTTCCTCATCGCTACTCTCGCTTTCGCTGGTGC TGTCTCGTTATTATTACTAAATTAGTACCGTGTCGCTGCTGCTGCTGCTG CTGCTGCTGCTGTGCTTTCATTACTTGTGCTGCTCATCGGTTGAGAATGA ACCCTACCAGAGAGAGCTGCTGCCAGCAAAGTACAAGTAGTTCCTGATGA CTGGTACTCTGTACTTTTGAATTTGATTATGCTGCTGGTGCTGCGGCGAC TGGTGCTGCTGCAGCAAAGTAGTTCCTGGTTCCTTGTACCTCTCAATCTC AGTTCTCTCAAGAGCTGGCATGGACACCCTGGGCACTGATACAGGCTCAG CCAGCGTAATACCTGATAGAAAACACCTCAGAGAATGAGACAGAACTGTG AAAGTTCCCTACTATTGCAGCGACTCTCCATGAAAGTAGGCTGAAATCTA CTTTGGTGAAAGTTACTATTTTACTGAAACCAAGGAGGCACTTTTACCGA AATTCTGTCACCAAAACTCATGGGGACCACCGTTTTGACATTTTTTTGAC GTGTCGCGAGAACAGCCTAATGATGTTGGATTTCGGTTCATGGCTCCGTG GGGATGCTCTTGCTTCGACGACAGAGTCTTATAGTAAGAAAAAATTACAA GTCTCAAGGGCTGTAAGGTATCATGATGACATACTCACGGCGCCTGTCTG TTTGTTTTACCACGTCCGCTGGGTGATCGTAGGCGCTCTTTTTCAAGAGA CATGTGCGACCCATGTCTTCGACTTGCTCTTCATCATTTAACGCGTAATT TTGTATAGTAAACGTATAAACTAGCTTGTACAAGTAAAATGTTGTAAGAG ACCCCTGTCAGTGGGCCTGTGGTGTTTCCAGGGCCACGTCTTGACGCTGC GATCCCTGACCCCCCTCTCCCCTCCCGTCTTCATTTCCTGCCTTAAAATG TGCGTGTGTGTTAATATATGCATGTGTGACGTGTTTGTTCAATATTCCGC GGATGCTGGGATCCGAAACAACTTCCTGTTCGATGAATATGGCAAAAGAC ACGCCGTTTCAGACCAAGGCCATGCGCGAGATCCAGCGCCTCCAGAAGGC CACGGTGTACCGCACGAGCATAATCAAGGTGGGCTTTCTTGGAGGCCTTT TTCCCCTGTGCGAGTACACCTTGATGCTTATTTTTTTTGTTACTTGACCA TTCGTATCGCCCCGGTTCAGAACACGCGAGGGAAAGTGTTAGTCGAACGA CTTGTAAGGAAGGTGCAGGGTTAAGAGGCAAGTCATTTACCTTTCCCCCC TCAAACTATCCACCGGTACTTAGTACTTCGGCTGTGAAGTACTATATAAT AGTACCGAGGCGGAGTATCCTTCGAAGCTGTAGCCTACGGTCCCATCTCG CGCCGACCGATACGCGGCTTGTGTGCGATTAGCGGTGGTGGTGTTACAGT CCGATACGTTCAACATGCCCACTTTATACCAATAATAGTATAGTGGGTGC GCGAAAAAAGAGGCGCACACTGATTGGTCCATGGTGATACCTGAAAAGGA AGCACCCGTCACTGGAACTACCTTGAGGTTTACTGGCCCTGTGCCGGCGG CGGCAGTATGTATGTATGTATGGTCATCACATATAGCAGAGTATGGATCA ACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATA ATATTCCCCTGTCCCCGTACGTGCCTGAGGATTTGGTCTCGCGAGACGGG TTCAGCCGTCTCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGA GAACGCCATCCGTACGCAATTGCTTGACCCGATAAACTCGGGACTCACCC GATGGCGTATGGCGGTTCAAATAAATCAATGGACACTGCCGCGGAAATCG AGAGAAATCTTGTGAGCAAGCACCGAATTCAGCCTGAGTATGGAGAATGA GCAGGCTGACGCAGGACAAGACAGCCGAACCCGTCTCGCGAGACCAAATT TTCAGGCGCGAACGGGGAGAGGGAAATGTTTATTTTCCCTGTTACAGCTG ACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCATACTCTGCTATG TGTGATGACCATAAATATATACGTACATACGTTAAACTCTATGTTGATCC ATACTCTGATATGTGTGATGACCATGTATACATACGTCAAACTCTATACG TTACATATCACGCACGTGTTGCTGACATACGAAGATATTTGAGAGGTTAT GCAGCTCGTACCTTAAGACTTCTGCTTTGCCTTTTTCACTTTCCGCCTAA GCCGCGGTAACAAAATAATGTGTCAGAGTAATTCGTAACCTGTTGTGTTA TGAGAATTTGATCGAAAATCTCAGCGTCGACAGGTCTTACACAGGAGGGG TGATGCTTTGGGTGGGCTTGATGCAGACTCGAGATGATTATGTGAGAGAC GAATGTAGAACCTATTTATTTTGTAACACTGGTGCCCGAGCCTTGGGTAC ACAACACAATATACAAACGTATACCACACGCCCTATACCCTCTCATACAC CGAAATGGTGGGGCTAATCACCCTCGATAGTAAGGGATTATTAAGCCAAT CCCCTCAGTAACAACGTAATTGCAATCGACCCAAATACTGATGTTAACGC TTCTAATCTAACCTATCCGGATGTTACCATACATAGAGTAAATCTTACAT CCCCCCTGCTCGATGATTGCTCAGCCTTCAAATTTACTAAATACAAGGAC TGTCATGTCACTAAGTATTCTTGTAGGTCACAGTCATGAAATGTTTTCAT TTTTGGACTAAAAGAACAACCACATCCGAACTTATTGTACTCAACGTGAC AGTAGAGTTATTCCGACTTCCCAAAAGTTTTATAGGTGCTCTGGCGCTCT CTCAAACTATTCATATCGCAATTGCCAGGAACATAAAAGTTCCTAAGGCC ATTCTTTATGACAAAACGACAAAATAAAGAAAAAATCTACAAAAATGTGG AAATTTTGTGGCCGAAAAAAACGTGGAAAAAAGTTGTGACCATTTATAGG GATAGAGAAAGAGTAAATAAAAATAGCGGGGAGTATACCGGTCGACCCCG GCGTTTTCTGGCACCCATCACGCCGCACAAAGGAAGGCGCAAGTATGTAC ATATAGCAGAGTATGGATCAACCGGGTAAGGTTGCCATTCCTGCTCGTGG TCAACTGAAGAGGGAAAATTAATATTTCCCTCTCCTCGTTTGCGCCTGAG AATCTAGTCTCGCGAGCCAGGGTCGTTTGGTACTTTAATTATGAGTATAT CGCAAATAAAGTGCGCAGGGCGACATCGTTTCGTCGGTGAGCTGACTCCT TACAACACAGCCCGGCTCTGCTTGATCTCCGGCGCCACCCATTCAACCGC TCCCGCCGCCGGGGATCGGCTTGTCCGGGCCTACCACCTCAACAGCTTCT ATAATTTTCTTTCAAGTCTGCTGCTCCGGCGACCACCGCACAACTACTGC TGCTCGGCACCCATCGTACAAGACCACTCGCGAGCTCTTCTTTGATAGGA GGGATGCCACAGTCCCGACCTCCCGATCGTGCTTGAGAAGGCGTAAATCA TTTATGTGGCGAAGTAAACTTGTCGAGCCACCTACATAATTTGGCCAAAT TTCTGTAGGTCGGCAGAGAAAAACAACCTCCCACATTCGCAGTTTATTTA GGGCGGAATTTCCGTGTTTTGAAGCCCATAGCGCGGCGTTTACAGAAAAT TCCGCCACAGTTTTTTTTTTTACACGTTTCTGTCTTCCATAAAAAATGGC CTAACGAATTGTCCCGCGTATAGTAGACCCAGAAACGTCTGTCTTAGTAG CGACCTCTATTCAGCGTGAAACACACGTCGAACTGACTTTTATTCCGTTA TCATTTACCAAGTGTTGTAGTACTTCGTGAAATCCCTTCGAACCTAAAAT ATAATATTCGACTCCAAAGGGCTTTCATTAAATGACGACCTACACCACAT CGTACCCTGGTGACAGTTGGCGGGTCATACATGGAACTTACGCATAACAC AACCCATGATATCATCATACATCTGCGAAATTTCATATTCTAATTGGTAT CAAATCAGAAACGTTTTATTATCGTGTCGCTCTCTATCATCTACGTCGAG GGAACACATTTTGAGACCTGATGATATGCCAAAAGTCTATAACAACAAAA GCATCTGCTATGCTAATGTTTTTTTACCGTTGTACTTGCAGTACATCAGC TCAGCAGTACAAACGATATTCTCACAATATTGGATGGGGTTGTGTACTGG GCTCTATTCCCAGCTTGAACTAAGGTAACACGAAATTAACAAACAAACAG AGATGTCAATTTTCATGCGGTTGATGAGCAGGAAGCCGCTCGCTCTCAAC TTGGTCTCTGGAAAAAGTTCTTCTTTGACTAGGCTCGCACATCGCGTTCG CATTTTCCATGAGCATGCAGTTTGTCTTCTCAGTCGAACATGTCCAAAGC TCTGCTCTGCTGTACTGGAGCATGACGTTTCAGAAAACCCATTTTGTCTT TCCAAAACACAAGAAAACACCCTCCTGATCGTAGCCCTAGCTCCAGACAA TCCTGGTACCACTCTAGTGATCTTGAGTCTCAGCGTTGACATGTCTTACA CGGGAGGGGTGATGTTGTGGGTGGGGATGATTTAGGCTTGGGATAGTCTC ATGACAGAGACAAATGTAGAACCGATATATTTTGTAACATTGGTGCCGCA GAATCTTGGGTGCACAAATCCCTCGTCACCCGAGTGCTCTTGTGATAACC TCGTACACCTGCTAGTGTGGAAGTTGCAGCTCGATTCTTGTGAAAGCAGG ATGTTTATTCTCCGTAGCGGAAAGCGTGAGAACGTGAGCATCTAAATTTA ACCATTGGTCAAGTTTTAAGACTGAACTTGCATTGCGATGAGAAATCTTA AGGCGAGAACCGGGAAGAGATAAAGATCATTCTTCGTGACCACAGGCGGG ATTACAACGTCGGAGTAGGAAGGATTGATAACCTAGCAAGTTGAGGCCCA TCGGCCGTAAGTGTAATACAAACAAAAAACAAACATAACATATACCACAC CTCCTATACCCTCTTACACACTGAAATTGTGATACTAATCACTGTAATAA CATAATTGTAGTCGACTCCAATATTGGTGTTACTATTCACTAGTGTTATC TATCCGCATGCAACTATACGTCGAGTAACTGTTACAGAAGTTAGCCGCGG ACCGATGATAAGCGTGTAAGGGGTTGAGGGTGCCAATTTTTTGTGTGTGC GTGTGCATTTTTTGAATTGCACATAATCGCGCAATCCGACCCAGTCATCC TAGTCATTCTATGCCACTCGCATTGTTTCTCCCAAGGGGGGAATCAATGA TGCTTGCTAGGAAAACCTCTGATCAGACGCGACAAAATCGACATGCTCCC TCTACAAATCTTGTTTTAGCCCTGAGCGCCTTGCGCTGCTCTCTCTAATT CCATCCTCTCCTCTAGATATCCTCGGTCGATATCTACTGAACCAACACTC TATTGTCTACGTTCTTTCTTCTACCGCCCAAATCTCCCCTGTTTTCCACA TCGCGTCTACAACTCTTGTATTATTTCTTGCGCCTCTTCGCCCCTTCTTC ACTCTCCCCGCTTCTGTCCCTCGCCTCCCGTCCACGGGCTCTGGTCCTCT GCATGATGCGATGCGTCACCTGGGGCGTCGGGTCTGGTCTCGCCACTGTG ACTGCTTGTTACTCATTGTCGTCGACCTGATTGCATTTTTTATTTGGCTC GCTGTCATCGGCCCTCTCGACGCGCAGATCCAGTTCCCGGATCGAGTGGT GCTGCAAGCGACATTTTCTTCCACGGAAGGCGTGAAAGATCTCGTGAGGC TCGTCCGCGAATCCTTTGGGGAGTCCTATCGGGAGAGAAAGGTGAGGATC GGGGAACATAATTTTTCCCACCGCGCTTGAAGGTTGGCTTGCGCTTATTT TCACGATTGCTGTCGGCTTGGAGGTGTTTTTATTTTTCCATCAATGAAAA GACTAGGCCACAAGGCAACGCCTGCCATATAGAATATACAGCAAAATATG CAATGCGTCAGGTATCAAGTGTTAACGGCATTTTCGTAGGACGAGCGTAT CGCAGTTACTGTTTGACACGCTAGTCCTTGCCCTGGCGAGTTTTTTAAAT CTTTTTGTGTTTTGCGTCGCCGAAAAGAGTCAGAAATGTTGCTAAAGTCG ACCGATCTTCATAGCCTCATCGAGAGCCCCCCTCCCTCCCCTCTTTTTCT TCGTACGAGCTACAGTATAAATGCATTATGGTTCATGCAATAAGGTGTGT ACCTGGTTCTACCCACAACCTAAGTATATATACTGATACTTATCTACTCA CCTACTTCCGGCGATGCGCGACCCATTTGTACCCTCTGCTGCTCGATTGC GTTGTTTTTATGGTACTAATTAACCCTATTATTCTGATATGTCACTATTT TTTCCGGCCTTTTCCGCCTCGCGCGCAAACGCAGTTCGAGCTGTACGTCA GCCCTCCTAGAATGGTCCTAAAAGAGGCATCGTCTTTGTCCGAAGCCGGT CTGGTCCCTGCTGCACTGGTATACGTTTCCTGGAAGGATATGCCTCCGTC GGGTGAGCTATGACCACAAAAATACTTCCTCCTGTTCATGTTGTTACGTT AATAGAAAGTCCTACACCAGGGGGGCGGGGATTGACCACGTTGCTATGTT CCAGCACGTCCGTGCTTCGTACGTGCAGTATCGGTCTGTCTGTACAGTAG TACGACTATTAATCACGATTACCAGTTGTAAAGATGGACATTTTAGTTCA TACCAGTCTGTATCTAAAATAGTAGTATAGAGAGTATTTCTTACTATATA TTTCTCACCCGCCCCTTCCCATCCCGTCTGATCCTGTCCCCCAATCCCGT CCCAGGCGAGGCCGAAGGTGCGTACCTTAAAACGGAATTGGTAGGCTCCG GCGAGGGGGGCAGTAGCGTGGCGCGACCCGTTGGGGTTTCCCTTGAAGCG GGAGGCGGGGGTGCGGAGGCGTCGAAGTTTGGGGCCGGCAGCAGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1159:16898..25692+

>mRNA_F-serratus_M_contig1159.1296.1 ID=mRNA_F-serratus_M_contig1159.1296.1|Name=mRNA_F-serratus_M_contig1159.1296.1|organism=Fucus serratus male|type=CDS|length=1092bp|location=Sequence derived from alignment at F-serratus_M_contig1159:16898..25692+ (Fucus serratus male)
ATGGAAGGCGTTACGACCGAGGAGACGGCGGGAGATCGTGCACTGATCGC
CAAAAAGGCGGCGCGGCAGATGGCGGAGAGGAAAAAACTCGAGGATGGAA
GGCGTTACGACCGAGGAGACGGCGGGAGATCGTGCACTGATCGCCAAAAA
GGCGGCGCGGCAGATGGCGGAGAGGAAAAAACTCGAGGACACGCCGTTTC
AGACCAAGGCCATGCGCGAGATCCAGCGCCTCCAGAAGGCCACGGTGTAC
CGCACGAGCATAATCAAGACACGCCGTTTCAGACCAAGGCCATGCGCGAG
ATCCAGCGCCTCCAGAAGGCCACGGTGTACCGCACGAGCATAATCAAGAT
CCAGTTCCCGGATCGAGTGGTGCTGCAAGCGACATTTTCTTCCACGGAAG
GCGTGAAAGATCTCGTGAGGCTCGTCCGCGAATCCTTTGGGGAGTCCTAT
CGGGAGAGAAAGATCCAGTTCCCGGATCGAGTGGTGCTGCAAGCGACATT
TTCTTCCACGGAAGGCGTGAAAGATCTCGTGAGGCTCGTCCGCGAATCCT
TTGGGGAGTCCTATCGGGAGAGAAAGTTCGAGCTGTACGTCAGCCCTCCT
AGAATGGTCCTAAAAGAGGCATCGTCTTTGTCCGAAGCCGGTCTGGTCCC
TGCTGCACTGGTATACGTTTCCTGGAAGGATATGCCTCCGTCGGTTCGAG
CTGTACGTCAGCCCTCCTAGAATGGTCCTAAAAGAGGCATCGTCTTTGTC
CGAAGCCGGTCTGGTCCCTGCTGCACTGGTATACGTTTCCTGGAAGGATA
TGCCTCCGTCGGGCGAGGCCGAAGGTGCGTACCTTAAAACGGAATTGGTA
GGCTCCGGCGAGGGGGGCAGTAGCGTGGCGCGACCCGTTGGGGTTTCCCT
TGAAGCGGGAGGCGGGGGTGCGGAGGCGTCGAAGTTTGGGGCCGGCAGCA
GGGCGAGGCCGAAGGTGCGTACCTTAAAACGGAATTGGTAGGCTCCGGCG
AGGGGGGCAGTAGCGTGGCGCGACCCGTTGGGGTTTCCCTTGAAGCGGGA
GGCGGGGGTGCGGAGGCGTCGAAGTTTGGGGCCGGCAGCAGG
back to top