mRNA_F-serratus_M_contig1156.1292.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1156.1292.1
Unique NamemRNA_F-serratus_M_contig1156.1292.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1156.1292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1156contigF-serratus_M_contig1156:131800..132974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size379
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1156.1292.1prot_F-serratus_M_contig1156.1292.1Fucus serratus malepolypeptideF-serratus_M_contig1156 131801..132974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.7133822-CDS-F-serratus_M_contig1156:131800..1319011622929052.7133822-CDS-F-serratus_M_contig1156:131800..131901Fucus serratus maleCDSF-serratus_M_contig1156 131801..131901 -
1690962683.6565752-CDS-F-serratus_M_contig1156:131800..1319011690962683.6565752-CDS-F-serratus_M_contig1156:131800..131901Fucus serratus maleCDSF-serratus_M_contig1156 131801..131901 -
1622929052.7282622-CDS-F-serratus_M_contig1156:132142..1322111622929052.7282622-CDS-F-serratus_M_contig1156:132142..132211Fucus serratus maleCDSF-serratus_M_contig1156 132143..132211 -
1690962683.6664205-CDS-F-serratus_M_contig1156:132142..1322111690962683.6664205-CDS-F-serratus_M_contig1156:132142..132211Fucus serratus maleCDSF-serratus_M_contig1156 132143..132211 -
1622929052.7409928-CDS-F-serratus_M_contig1156:132372..1324861622929052.7409928-CDS-F-serratus_M_contig1156:132372..132486Fucus serratus maleCDSF-serratus_M_contig1156 132373..132486 -
1690962683.6836255-CDS-F-serratus_M_contig1156:132372..1324861690962683.6836255-CDS-F-serratus_M_contig1156:132372..132486Fucus serratus maleCDSF-serratus_M_contig1156 132373..132486 -
1622929052.7593265-CDS-F-serratus_M_contig1156:132880..1329741622929052.7593265-CDS-F-serratus_M_contig1156:132880..132974Fucus serratus maleCDSF-serratus_M_contig1156 132881..132974 -
1690962683.6950293-CDS-F-serratus_M_contig1156:132880..1329741690962683.6950293-CDS-F-serratus_M_contig1156:132880..132974Fucus serratus maleCDSF-serratus_M_contig1156 132881..132974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1156.1292.1

>prot_F-serratus_M_contig1156.1292.1 ID=prot_F-serratus_M_contig1156.1292.1|Name=mRNA_F-serratus_M_contig1156.1292.1|organism=Fucus serratus male|type=polypeptide|length=126bp
TRRAREHQQANANAAAEATIQGQHEETSRRPHIEARPARQQQQANVDAAA
EAALRAQREETTRRAGHHRAADAAAAEAARVAAQAQRVRHLLDNEARRAR
QQLQANANAAAEAALRDLHEETTRRP
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mRNA from alignment at F-serratus_M_contig1156:131800..132974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1156.1292.1 ID=mRNA_F-serratus_M_contig1156.1292.1|Name=mRNA_F-serratus_M_contig1156.1292.1|organism=Fucus serratus male|type=mRNA|length=1175bp|location=Sequence derived from alignment at F-serratus_M_contig1156:131800..132974- (Fucus serratus male)
ACACGGCGAGCTCGGGAACACCAGCAGGCAAACGCAAATGCAGCGGCGGA
AGCTACTATACAGGGTCAGCATGAAGAAACGAGCCGACGACCTCGTAAGC
GCTGTTTGAATTTTCGAAAATAAAACTGTGTTTCAAACATTCTGAACTTT
CTGTTATCGAGACAACTGCTGTGTACTTGAACTCATATACCGCAAGTTGT
GGCTTTTGTTCTACACTGTTGTAGTGTATACTCGTAGCTTCTACTCCTGA
AACGTGCACATTTCGTATTCCTTCGTGAATCACGATCTGTACAAAGACAT
CGAAGCACGGCACTGTGTTTCAAACAGTCTAAACTTTCTCTTATCGAAAC
AACTGTTGTGTACTTGAACTCATATACAGTACCGCAATTTGTGGCTTTTG
TTCTACACTGTTGTAGTGTATACTCGTAGCTTCTACGCCTGAAACGTGCA
CATTTCGTATTCCTTCGTGTATCACGATCTGTACAAAGACATCGAAGCAC
GGCCAGCCCGGCAACAGCAGCAGGCAAACGTTGATGCAGCGGCGGAGGCG
GCTTTGCGGGCTCAGCGTGAAGAGACTACACGACGAGCTGGTCATCACAG
AGGTGTCGTACGTTGTGCAAAAAATTTGAATAGGGGCTTTAGACTCTCTC
TCTTCCCCGGCCGGTTTTCACGACCAGACAGCCCGCCGAAAATATTCACA
AATTACTACGTCGCTTCTCCTCTCTTCGATGTACCTATACGACGTTGCAC
TTCCGTCACACAGCCGCCGATGCTGCTGCAGCCGAGGCTGCGCGGGTGGC
TGCTCAGGCGCAGCGGGTTCGCCACCTCCTAGGTAAAAGCATCTACCTTT
CCGTTAAAAACAGTCCACGTCGTTTGTCTCTTGGTCTTTTTCAAACAGTC
CAAACTCTTCGATCGAGACAACTCTGTGTACTGATGTTACCGTAGTTAAA
CTCATATACTACATTTTGTGACTTCGGTCATACGCTGTCGTATACTCGTA
CTCGTATATAATAGCTTCTACGCCTGAAATTTGAACATTTTGTATTCCTT
CCCGTCTCACGGTCTGCACAAAGACAATGAAGCACGGCGTGCCCGGCAAC
AGCTGCAGGCGAACGCAAACGCAGCGGCGGAGGCGGCTTTACGGGATCTC
CATGAAGAAACGACCCGACGGCCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1156:131800..132974-

>mRNA_F-serratus_M_contig1156.1292.1 ID=mRNA_F-serratus_M_contig1156.1292.1|Name=mRNA_F-serratus_M_contig1156.1292.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig1156:131800..132974- (Fucus serratus male)
ACACGGCGAGCTCGGGAACACCAGCAGGCAAACGCAAATGCAGCGGCGGA
AGCTACTATACAGGGTCAGCATGAAGAAACGAGCCGACGACCTCACACGG
CGAGCTCGGGAACACCAGCAGGCAAACGCAAATGCAGCGGCGGAAGCTAC
TATACAGGGTCAGCATGAAGAAACGAGCCGACGACCTCACATCGAAGCAC
GGCCAGCCCGGCAACAGCAGCAGGCAAACGTTGATGCAGCGGCGGAGGCG
GCTTTGCGGGCTCAGCGTGAAGAGACTACACGACGAGCTGGTCATCACAG
AGACATCGAAGCACGGCCAGCCCGGCAACAGCAGCAGGCAAACGTTGATG
CAGCGGCGGAGGCGGCTTTGCGGGCTCAGCGTGAAGAGACTACACGACGA
GCTGGTCATCACAGAGCCGCCGATGCTGCTGCAGCCGAGGCTGCGCGGGT
GGCTGCTCAGGCGCAGCGGGTTCGCCACCTCCTAGCCGCCGATGCTGCTG
CAGCCGAGGCTGCGCGGGTGGCTGCTCAGGCGCAGCGGGTTCGCCACCTC
CTAGACAATGAAGCACGGCGTGCCCGGCAACAGCTGCAGGCGAACGCAAA
CGCAGCGGCGGAGGCGGCTTTACGGGATCTCCATGAAGAAACGACCCGAC
GGCCTACAATGAAGCACGGCGTGCCCGGCAACAGCTGCAGGCGAACGCAA
ACGCAGCGGCGGAGGCGGCTTTACGGGATCTCCATGAAGAAACGACCCGA
CGGCCT
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