mRNA_F-serratus_M_contig1155.1275.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1155.1275.1
Unique NamemRNA_F-serratus_M_contig1155.1275.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1155.1275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1155contigF-serratus_M_contig1155:84762..86500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size217
Cds size168
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1155.1275.1prot_F-serratus_M_contig1155.1275.1Fucus serratus malepolypeptideF-serratus_M_contig1155 84762..86451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.1242235-CDS-F-serratus_M_contig1155:84761..848911622929052.1242235-CDS-F-serratus_M_contig1155:84761..84891Fucus serratus maleCDSF-serratus_M_contig1155 84762..84891 +
1690962683.401885-CDS-F-serratus_M_contig1155:84761..848911690962683.401885-CDS-F-serratus_M_contig1155:84761..84891Fucus serratus maleCDSF-serratus_M_contig1155 84762..84891 +
1622929052.1394699-CDS-F-serratus_M_contig1155:86413..864511622929052.1394699-CDS-F-serratus_M_contig1155:86413..86451Fucus serratus maleCDSF-serratus_M_contig1155 86414..86451 +
1690962683.4111583-CDS-F-serratus_M_contig1155:86413..864511690962683.4111583-CDS-F-serratus_M_contig1155:86413..86451Fucus serratus maleCDSF-serratus_M_contig1155 86414..86451 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.1545732-UTR-F-serratus_M_contig1155:86451..865001622929052.1545732-UTR-F-serratus_M_contig1155:86451..86500Fucus serratus maleUTRF-serratus_M_contig1155 86452..86500 +
1690962683.4193552-UTR-F-serratus_M_contig1155:86451..865001690962683.4193552-UTR-F-serratus_M_contig1155:86451..86500Fucus serratus maleUTRF-serratus_M_contig1155 86452..86500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1155.1275.1

>prot_F-serratus_M_contig1155.1275.1 ID=prot_F-serratus_M_contig1155.1275.1|Name=mRNA_F-serratus_M_contig1155.1275.1|organism=Fucus serratus male|type=polypeptide|length=56bp
HQAFNHESPSWRRQIKASIPARVHSRGGDRVRQKRNDRRETKKLSSTDRR
WCRKL*
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mRNA from alignment at F-serratus_M_contig1155:84762..86500+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1155.1275.1 ID=mRNA_F-serratus_M_contig1155.1275.1|Name=mRNA_F-serratus_M_contig1155.1275.1|organism=Fucus serratus male|type=mRNA|length=1739bp|location=Sequence derived from alignment at F-serratus_M_contig1155:84762..86500+ (Fucus serratus male)
CATCAAGCATTCAATCATGAAAGTCCCTCCTGGAGGAGACAAATAAAAGC
GTCAATACCAGCAAGAGTGCATTCGCGTGGCGGTGACAGGGTCAGGCAGA
AGAGGAACGACCGCCGCGAAACGAAGAAATGTGGGTCAATCAATCGCAGT
TGTTTACAGCCTGCTTTCTCAGGAGACCGTGTTGCTGGCTTTCTCTAAAG
CGACCCATTTCGCCATGAAACAGACGTTCCGCCCCTTGTTCCGCCGTCTT
GCGCCATTCCCTCTCGTCCTGGGTTGCAGTGTCATGTCATCCACCACTGG
TCGGCGTTGGGGCCGAAATCTCTCTGTTCAGACCATCATTCCTTCGGATG
TACAAAAAATACTATTAATAGCAGAGTCTGTTGCTGCTGCCTCCGGTCGT
AACTGAATTATTAGTCCGAGAGAAACCCGACCCGGACTTGTTTCAAAGAT
CATTCCAAAACCGCGCACAGTTTATTACTTGATACAGTGTGTGTGTGTGT
GTATTTATTAAATTGCACATAACCACGCAATCCGGCCCTGTCATCCTAGT
CATTCTATGCCACTCGCATTGATCCTCCCGAGGGGGGATCAATGATACTT
ATTACGAAAACCTCTAATCAGACGCGACAAAGGGGACACGCTCTCTCTAC
TTGTGTGTGTGTGTGTGTGTGTATTTATTAAAGTGTGTGTGTGTGTGTTT
TCTTCCCATTCATTCTGGACATCATGAAATTCGTTAGACGTACCAGCCGG
GGTAACACAGGAGGAAGGTCACACAGGATTTTTCATCCACCATCCTTCTG
CCTGCAGTGCGTGCCTCAATTTTTCTCGCGAGAAGGATTCAGCCATTCCT
TTCCCTCATCGACCGTGAAGTCGTTTTTTTGTGTAGTTGTCATTTGACTT
TAACCCTGTGGTGTAATAGTAACTTTATTACACTGGCGTCGATGGTAGGG
CTTGGTTCAAATACCGCTGAGCTAGATTTTTTTACCTCACCGAATTCCTG
GGCAGAAAATCGGTTGGAGAAAGAAAGCGATGTTGCTCCTACAATAGTAC
ACAAAATTCGACTTCACGGTCGACGAGGGAAAGGAATGCCTGAATCCTTC
TCGCGAGAAAACTAAGGCATGCACCGCAGAAAGAAGTTGGATGAGAAATC
CTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGCACGTCCAACGAACTT
GATGTCCAGAATGAATGGGAGGAAAACACACACACACACATGGGGGGGCG
AGAAGTAACCCCCAGGTGGGTTACATGCAGTAGCATAGAATGAGTAGACT
ACATGGCCGGATTGCGCGGTTAGGTGCAATTTAATAAATATACACACACA
CACACACACACAAAACCTTCTCGAATTAACTAATAATCCGCTTGATCACA
GGCTATTAATAGTCAAATTCTGTGGGTGGGGGTGTTGTGAGGACTGATGA
CCAAGTAGTAGTAATTGTCAATTGACTTTTACTAACTTTATCACAGCCTG
CTTTTGATACAGTGATATGCAGCCTGCTTTCTCAGGAGACCGAGAAAATC
CGAACGTTCCTGGCTTTCTCTGCAGCGACCCATTTCTGGCAATGAAACGT
TCTTCCTCTTGTTCCGCCGTCTTACGCCATTCCCCCTCGTCCTTGGCTGC
AGTGTCATCCACTGATCGGCGTTGGTGCCGAAAGCTCTAAAGGTCTGAGT
TGAGGTCGTCGTCCAGGAATAAGCCGCTACCTGTTACTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1155:84762..86500+

>mRNA_F-serratus_M_contig1155.1275.1 ID=mRNA_F-serratus_M_contig1155.1275.1|Name=mRNA_F-serratus_M_contig1155.1275.1|organism=Fucus serratus male|type=CDS|length=336bp|location=Sequence derived from alignment at F-serratus_M_contig1155:84762..86500+ (Fucus serratus male)
CATCAAGCATTCAATCATGAAAGTCCCTCCTGGAGGAGACAAATAAAAGC
GTCAATACCAGCAAGAGTGCATTCGCGTGGCGGTGACAGGGTCAGGCAGA
AGAGGAACGACCGCCGCGAAACGAAGAAATCATCAAGCATTCAATCATGA
AAGTCCCTCCTGGAGGAGACAAATAAAAGCGTCAATACCAGCAAGAGTGC
ATTCGCGTGGCGGTGACAGGGTCAGGCAGAAGAGGAACGACCGCCGCGAA
ACGAAGAAATTGTCATCCACTGATCGGCGTTGGTGCCGAAAGCTCTAATG
TCATCCACTGATCGGCGTTGGTGCCGAAAGCTCTAA
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