prot_F-serratus_M_contig1151.1272.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1151.1272.1
Unique Nameprot_F-serratus_M_contig1151.1272.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length1361
Homology
BLAST of mRNA_F-serratus_M_contig1151.1272.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE)

HSP 1 Score: 484 bits (1246), Expect = 7.710e-144
Identity = 345/809 (42.65%), Postives = 435/809 (53.77%), Query Frame = 0
Query:  409 VSALSALEGEGFASDDFQCNICWEMLARPVTLVCGHTACEACMAKYLRTQAHAQARLGNIRANRIACPAGCQRMIPLALPEVTTLIQKLLIKAFPRAYRARLEEANADNVLVTQVRRIAEEAAAESXXXXXRPVHPLGGVLGPGGVGDGG----GGGVPDFIAFGNAPPDFLPGLRGQQNAARFRLDVAVPNGDFPRVVSRWYKRMGMCLFVFLCLSWQHQRAMGGGDLLQHPGLSFLRGAGRSRGAARVADTGYASSSISSSSRANGGVCSASGDGSAEDEDSGEGSDSCASYEDPAGKG---ATSETGFHGGERRWLFSMELNLQEFVARNRWVALRSFYPLNNPWSSSLYLYFDDPILVTHPQRPAPTQTXXXXXXXXXSPLSSGDQGVPKEEAFSSKTSRVGEEGAVSTDGAVDFAGRKSTADGADTLPQTGDDGEVGTVDVYVEGLIAAKTAAEEHGGNIDPLAPSGRAVGQNGVGVGDGDDAGD-------------------------------------------------------------------GERGKPRRMFLEFYGPIVDIFLGLGFPAWLSEVLTVVAAQLCPLLEVAPLLRLSTRTAGSAGSAAGVDVGLVGSTIDEVLSLNFSLDLVIYGVFKLVLLTLAFWRSKWGWLMWLRAQPRDRGARVWRVLLLSCAGF-VAREFFMIKVVFPLVEHVVFGYLLQWPSRYLLAWAVISLRVGLMKLIVMLQMVMLMLSLFLPQGTLHSMETLWCHMFTHLLLGTRFYNTFFVGEADGRRRQL----ARRLARAMR 1138
            V  ++A   EG   DDFQCNICWEMLARPVTL CGHTACE+CMAKYLR QA AQA++GN+RANRI+CPAGCQRMIPL LPEVTT++QKLL + FP AYR RL+E   +  LV+QVRRIA++A    XXXXX         +             GG   + + FGN PP F+ GL GQQNAARFRLDVAVP  + P  V+RWYK MG+ LF  LC+SWQ+    G G  L HP L+F R   ++   A    T  +S    +   A G V   SGD              C+   D A KG     S  G  GG   W FSME+N+QE++A NRW ALRSF+P  + WS  L+LY +DPIL+T P        XXXXXXXXX              A S K  RVG  G  S+  A   +G  ST       P T    +VG +        +  ++  +HG                       DD  +                                                                   GE  + RR+FLEF+GP+V +F  LG PAWLSE+LTVVAAQLCPLL   PLLRLS R+   AG          G + D+++SL+FSLDL IY VF L + T   WR  W    + R +PR R  +    LLL+ A F + RE  MIKV FP++EH++F Y+LQW  RYLLAW  +S+RV +++L+  L++ +LM +  +P+G LH++E +WCH+FT+LLLGTRF+NTFFVG  DG RR +    ARR  RAMR
Sbjct:  426 VGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNVRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYRERLQETEPERALVSQVRRIADDAXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXLGGMAREVVGFGNVPPGFMQGLHGQQNAARFRLDVAVPQREIPPTVARWYKYMGLALFACLCVSWQYPGTTGEG--LWHPSLAFWR---KNNEPAVTVTTSASSHQCVAEGGAGGAV---SGD--------------CSVASDGAEKGEFAGGSSEGNSGGSWGWPFSMEMNVQEYIAHNRWNALRSFHPSTSAWSGPLFLYLEDPILLT-PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-SKKGPRVGRGG--SSGSASPPSGWLSTL----AWPVTYSLRKVGVLSSPAN--TSEDSSGNDHGAXXXXXXXXXXXXXXXXXXXXXXDDRHECGHASFGXXXXXXXXXXXEVCWREGKEAPAEVSSPVESYSAEXXXXXXXXXXXXXXXXXXXXXEGAAGESQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRSTKGAG----------GDSADDLVSLDFSLDLAIYAVFTLAITTATLWRFTWK--SFKRDRPRSRSLK----LLLTAAAFHLVREVAMIKVAFPIIEHLLFHYVLQWRRRYLLAWLALSIRVFIIRLLACLRVALLMATPLVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVG--DGPRRHVGGRAARRWVRAMR 1184          
BLAST of mRNA_F-serratus_M_contig1151.1272.1 vs. uniprot
Match: D7G4J4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J4_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 4.330e-129
Identity = 324/792 (40.91%), Postives = 412/792 (52.02%), Query Frame = 0
Query:  409 VSALSALEGEGFASDDFQCNICWEMLARPVTLVCGHTACEACMAKYLRTQAHAQARLGNIRANRIACPAGCQRMIPLALPEVTTLIQKLLIKAFPRAYRARLEEANADNVLVTQVRRIAEEAAAESXXXXXRPVHPLGGVLGP-----------GGVGDGGGGGVPDFIAFGNAPPDFLPGLRGQQNAARFRLDVAVPNGDFPRVVSRWYKRMGMCLFVFLCLSWQHQRAMGGGDLLQHPGLSFLRGAGRSRGAARVADTGYASSSISSSSRANGGVCSASGDGSAEDEDSGEGSDSCASYEDPAGKGATSETGFH---GGERRWLFSMELNLQEFVARNRWVALRSFYPLNNPWSSSLYLYFDDPILVTHPQRPAPTQTXXXXXXXXXSPLSSGDQGVPKEEAFSSKTSRVGEEGAVSTDG-AVDFAGRKS--TADGADTLPQT-----------------------------GDDGEVGTVDVYVEGLIAA-----------KTAAEEHGGNIDPL-APSGRAVGQNGVGVGDGDDAGDGERGKPRRMFLEFYGPIVDIFLGLGFPAWLSEVLTVVAAQLCPLLEVAPLLRLSTRTAGSAGSAAGVDVGLVGSTIDEVLSLNFSLDLVIYGVFKLVLLTLAFWRSKWGWLMWLRAQPRDRGARVWRVLLLSCAGFVAREFFMIKVVFPLVEHVVFGYLLQWPSRYLLAWAVISLRVGLMKLIVMLQMVMLMLSLFLPQGTLHSMETLWCHMFTHLLLGTRFYNTFFVGEADGRRRQL----ARRLARAMR 1138
            V  ++A   EG   DDFQCNICWEMLARPVTL CGHTACE+CMAKYLR QA AQA++GN+RANRI+CPAGCQRMIPL LPEVTT++QKLL + FP AYR RL+E   +  LV+QVRRIA++A    XXXXX         +             GGV         + + FGN PP F+ GL GQQNAARFR             ++ W K     + V    S  HQ   GGG                        D G              G CS + DG                    A KG  +E       GG   WLFSME+N+QE++A NRW ALRSF+P  +PWS  L+LY +DP+L+T    P+    XXXXXXXXX       +G P+     S  S     G +ST    V ++ RK    +  A+T   +                             GD  E G   V                   K A EE     +   A S             G +   GE  + RR+FLEF+GP+V +F  LG PAWLSE+LTVVAAQLCPLL   PLLRLS R+            G  G + D+++SL+FSLDL IY VF L + T+  WR  W    + R QPR R  ++   LL + A  + RE  MIKV FP++EH++F Y+LQW  RYLL W  +S+RV +++L+  L++ +LM + F+P+G LH++E +WCH+FT+LLLGTRF+NTFFVG  DG RR +    ARR  RAMR
Sbjct:  171 VGFVAAPRAEGLTGDDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQAQIGNLRANRISCPAGCQRMIPLVLPEVTTMVQKLLTRGFPSAYRERLQETEPERALVSQVRRIADDAXXXXXXXXXXXXXXXXXXIXXXXXXXXXXXXLGGV-------AREVVGFGNVPPGFMQGLHGQQNAARFRS------------LAFWRKNNEPAVTVTTSAS-GHQCVAGGG----------------------AGDAGS-------------GDCSVANDG--------------------AEKGEFAEVSSEEGGGGAWCWLFSMEMNVQEYIAHNRWNALRSFHPSTSPWSGPLFLYLEDPVLLT----PSXXXXXXXXXXXXXXXXXXSKKG-PRVGGDGSSDSASPPSGWLSTLAWPVTYSLRKIGVLSSPANTSEDSSGXXXXXXXXXXXXXXXXXXXXXXXXVSDGDRHECGHASVDGXXXXCCGEDNEVCWREGKKAPEEVSSPAERFSAESXXXXXXXXXXXXXGAEGAAGEPQQQRRIFLEFFGPVVGVFAALGLPAWLSELLTVVAAQLCPLLAAMPLLRLSPRSTK----------GAEGDSADDLVSLDFSLDLAIYAVFTLAIATVTLWRFTWK--TFKRDQPRSRTLKL---LLTAAASHLVREVVMIKVAFPIIEHLLFHYVLQWRRRYLLTWLALSIRVFIIRLLACLRVALLMATPFVPRGLLHTLEGVWCHLFTYLLLGTRFFNTFFVG--DGPRRHVGGRAARRWVRAMR 865          
BLAST of mRNA_F-serratus_M_contig1151.1272.1 vs. uniprot
Match: A0A836CBF7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBF7_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.130e-7
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 0
Query:  427 CNICWEMLARPVTLVCGHTACEACMAKYLRTQAHAQARLGNIRANRI---ACPAGCQRMIPLALPEVTTLIQKLLIKAFPRAYRARLEEANAD 516
            C IC E+L RPVTL CGHTACE C A++L     +  R     A  +   ACPAGC   + LALP V+ ++ K++      A + R  +A+ D
Sbjct:  291 CPICLELLYRPVTLPCGHTACELCFARFLTPFTPSTRRRAGASARALGDPACPAGCSTPLALALPAVSCVLAKVIDARPLDAAQRRARDAHYD 383          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1151.1272.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAA6_9PHAE7.710e-14442.65RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G4J4_ECTSI4.330e-12940.91RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CBF7_9STRA1.130e-740.86RING-type domain-containing protein n=1 Tax=Tribon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 426..458
e-value: 2.8E-6
score: 27.1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 922..978
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 606..622
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..605
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 1016..1039
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 904..921
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 979..995
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 996..1015
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 623..903
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1089..1360
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1040..1058
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 1059..1088
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 422..502
NoneNo IPR availableTMHMMTMhelixcoord: 1032..1051
NoneNo IPR availableTMHMMTMhelixcoord: 1058..1080
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 418..528
e-value: 2.7E-12
score: 48.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 427..476
score: 9.804

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1151contigF-serratus_M_contig1151:225762..272251 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1151.1272.1mRNA_F-serratus_M_contig1151.1272.1Fucus serratus malemRNAF-serratus_M_contig1151 214278..273704 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1151.1272.1 ID=prot_F-serratus_M_contig1151.1272.1|Name=mRNA_F-serratus_M_contig1151.1272.1|organism=Fucus serratus male|type=polypeptide|length=1361bp
MNEDIQGAGASPPTPSLASSPPAPRQQQQQQHQRQQDATFPAPHNKRKRS
RVVRAGTAEATPPHLDDTPPSSAVVLAEQDTEFPQTPGLSSSFSRVSKSG
SGSVVGKKTSARGVGGSSGRPLVKTPRRENGAPTAPEAASAGPDHSVAPD
NPSPDVPMGDVDCEREQSQVKVPGAAVGGGSESRRSRSVAGTDGAGKYEE
ERPCKLPRRLAEAVIRAEMEEGDQVQARVPADSSTSVSATANRRWDRSGF
SQDPPPLQAGRAGAPLPYRPPTPSPAAPSSGGSSAVEAAVDPDGGSSYLG
VARRSRASESRIHGALGRRRGESDDLGVGRSGTTPTPRGRASRAEDVGGE
AGAEASASESRSVLASDGGGNVAVGEETVGIRRGDVDAGERVVGGVGGEA
TGQGGDEAVSALSALEGEGFASDDFQCNICWEMLARPVTLVCGHTACEAC
MAKYLRTQAHAQARLGNIRANRIACPAGCQRMIPLALPEVTTLIQKLLIK
AFPRAYRARLEEANADNVLVTQVRRIAEEAAAESRRRRRRPVHPLGGVLG
PGGVGDGGGGGVPDFIAFGNAPPDFLPGLRGQQNAARFRLDVAVPNGDFP
RVVSRWYKRMGMCLFVFLCLSWQHQRAMGGGDLLQHPGLSFLRGAGRSRG
AARVADTGYASSSISSSSRANGGVCSASGDGSAEDEDSGEGSDSCASYED
PAGKGATSETGFHGGERRWLFSMELNLQEFVARNRWVALRSFYPLNNPWS
SSLYLYFDDPILVTHPQRPAPTQTASASSSSSSSPLSSGDQGVPKEEAFS
SKTSRVGEEGAVSTDGAVDFAGRKSTADGADTLPQTGDDGEVGTVDVYVE
GLIAAKTAAEEHGGNIDPLAPSGRAVGQNGVGVGDGDDAGDGERGKPRRM
FLEFYGPIVDIFLGLGFPAWLSEVLTVVAAQLCPLLEVAPLLRLSTRTAG
SAGSAAGVDVGLVGSTIDEVLSLNFSLDLVIYGVFKLVLLTLAFWRSKWG
WLMWLRAQPRDRGARVWRVLLLSCAGFVAREFFMIKVVFPLVEHVVFGYL
LQWPSRYLLAWAVISLRVGLMKLIVMLQMVMLMLSLFLPQGTLHSMETLW
CHMFTHLLLGTRFYNTFFVGEADGRRRQLARRLARAMRHQEQAQGGDEAA
VGRLFGVAPARQQRHQQQGGGVGGPAQDAAAAAAAAAVAAAVAGNRNDPA
VLLPQRNRARNRGGAGGGGDRDVGDDRPGVQPPANEAGGDGAAVPNAGGG
GLLRREEVEGLLGGLPQAERDRMRAAVIATMERMERLWPRVPVAGGGVGQ
AVAAREGGIARRGAGGAGAGDGDRGDGGLVLALAAVGAGGERLEGEEGVA
ALEDVEGGDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING