mRNA_F-serratus_M_contig1150.1270.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1150.1270.1
Unique NamemRNA_F-serratus_M_contig1150.1270.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1150.1270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1150contigF-serratus_M_contig1150:258107..258663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size557
Cds size306
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929050.5975716-UTR-F-serratus_M_contig1150:258106..2583571622929050.5975716-UTR-F-serratus_M_contig1150:258106..258357Fucus serratus maleUTRF-serratus_M_contig1150 258107..258357 +
1690962682.839432-UTR-F-serratus_M_contig1150:258106..2583571690962682.839432-UTR-F-serratus_M_contig1150:258106..258357Fucus serratus maleUTRF-serratus_M_contig1150 258107..258357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929050.6187994-CDS-F-serratus_M_contig1150:258357..2586631622929050.6187994-CDS-F-serratus_M_contig1150:258357..258663Fucus serratus maleCDSF-serratus_M_contig1150 258358..258663 +
1690962682.856468-CDS-F-serratus_M_contig1150:258357..2586631690962682.856468-CDS-F-serratus_M_contig1150:258357..258663Fucus serratus maleCDSF-serratus_M_contig1150 258358..258663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1150.1270.1prot_F-serratus_M_contig1150.1270.1Fucus serratus malepolypeptideF-serratus_M_contig1150 258358..258663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1150.1270.1

>prot_F-serratus_M_contig1150.1270.1 ID=prot_F-serratus_M_contig1150.1270.1|Name=mRNA_F-serratus_M_contig1150.1270.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MARGTVNPTNSTGKFCYPLVHCRTQTQTSDARVFLMDMKGAFHDGGEVRL
LHNVLKPKDKYSEKTPVGSLIDEVSRLNLWTQGAHRTKPLPTWFLSAFPP
R*
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mRNA from alignment at F-serratus_M_contig1150:258107..258663+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1150.1270.1 ID=mRNA_F-serratus_M_contig1150.1270.1|Name=mRNA_F-serratus_M_contig1150.1270.1|organism=Fucus serratus male|type=mRNA|length=557bp|location=Sequence derived from alignment at F-serratus_M_contig1150:258107..258663+ (Fucus serratus male)
TCCCATCAAAACTATTACCACGTTACTCCCCAAACAGTATAGTCGATGCA
GCATCATCGCTTGAGTACAGTGAACCTCCGCGGTAGACCCCTCCCACCGC
TGCCGTCTTGTCTTCATGCTCTGAAATAATCCTGGTAATAATCACGTGCT
CTGCCGCCCGCGCGCCCGTTTCTGCCTTAATCGCATCAATCAAGTCGGGG
CTTTGTTTTTACTCCCTCGCGATGCAATGAGCGCTCAATCTCACCATCGC
GATGGCACGAGGGACAGTCAACCCGACTAACTCTACCGGAAAATTTTGCT
ACCCTCTCGTACACTGCCGAACACAGACACAGACAAGCGACGCGCGCGTC
TTCCTGATGGATATGAAAGGCGCCTTCCATGACGGGGGTGAGGTTCGCCT
ACTACACAACGTACTCAAGCCCAAAGACAAATATTCAGAAAAGACACCGG
TAGGCTCGCTGATCGATGAGGTTTCTAGACTCAACTTATGGACGCAGGGG
GCGCATAGAACCAAGCCTTTGCCGACTTGGTTTTTGTCCGCCTTCCCCCC
CCGATAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1150:258107..258663+

>mRNA_F-serratus_M_contig1150.1270.1 ID=mRNA_F-serratus_M_contig1150.1270.1|Name=mRNA_F-serratus_M_contig1150.1270.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig1150:258107..258663+ (Fucus serratus male)
ATGGCACGAGGGACAGTCAACCCGACTAACTCTACCGGAAAATTTTGCTA
CCCTCTCGTACACTGCCGAACACAGACACAGACAAGCGACGCGCGCGTCT
TCCTGATGGATATGAAAGGCGCCTTCCATGACGGGGGTGAGGTTCGCCTA
CTACACAACGTACTCAAGCCCAAAGACAAATATTCAGAAAAGACACCGGT
AGGCTCGCTGATCGATGAGGTTTCTAGACTCAACTTATGGACGCAGGGGG
CGCATAGAACCAAGCCTTTGCCGACTTGGTTTTTGTCCGCCTTCCCCCCC
CGATAAATGGCACGAGGGACAGTCAACCCGACTAACTCTACCGGAAAATT
TTGCTACCCTCTCGTACACTGCCGAACACAGACACAGACAAGCGACGCGC
GCGTCTTCCTGATGGATATGAAAGGCGCCTTCCATGACGGGGGTGAGGTT
CGCCTACTACACAACGTACTCAAGCCCAAAGACAAATATTCAGAAAAGAC
ACCGGTAGGCTCGCTGATCGATGAGGTTTCTAGACTCAACTTATGGACGC
AGGGGGCGCATAGAACCAAGCCTTTGCCGACTTGGTTTTTGTCCGCCTTC
CCCCCCCGATAA
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