mRNA_F-serratus_M_contig115.1264.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig115.1264.1 vs. uniprot
Match: D7FZF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF6_ECTSI) HSP 1 Score: 439 bits (1128), Expect = 1.390e-126 Identity = 475/1227 (38.71%), Postives = 552/1227 (44.99%), Query Frame = 1
Query: 1 MPELQLFDLVAGGAFERALEDMGQQH---HGVWSYLPLFLQMLRDGSSRSGAEAGDRFDKLLR----VVVQNRRADSTEDYLNVAKECCALLRKLPAPSSSTXXXXXXXXXXXXXXXXX-------------ASPVLGSGPAGXXXXXXXXXXXXXXEWDLAVIA---------EMXXXXXXXXGDTSTPGVAMPRRGGKQMDLLLEMESLEPQQLMSVKGASSHPPAAAASGTSDAAQGGVAPTGGPGGLA---VEKGGGNGRGTGAEVSSGVGGQRISGKEERRGGRESGASSESLDLLSQRSSLEEELHVLLPVLLAHAPRIRMREATGALLRTRFAPSLLHVSVMNDPLSLESIVLGVCDAVATVGNPPSATSQRPPRATRRTLKPNRVTQRAEELVMRLCSLGEMTSIKVRSVLVKRRSLPGVCARVTCEILHDAERFLLSVSAASDRGGGSANDGDDDDAIGRSREEGVRSYDYTGALGGAVDDVASHWFWGHLRESPARATQLLDAVLDRVKSLCREAGAVV-----------SEPNPRRDASTATVGDLCSTLRSYCALANLARPA-LRPQHVRTAVEVPLVALRAALASRPFFSSRSASDVAAAXXXXEVSDEDNQGGQSGGDWLGCDAAARLEEILLCAIVVTARRLGADAATATXXXXXXXXXXXXXXXXXXXXXFEXXXXEEAERTKWATVGGDPESGVWSCATALRRLVELCRSEAVTAGGGKNEGFSSRRSSSGECFAGLFGTLLLRGSRLEALNEVVGEMLGTAYPVSPLEGVGERGGEVFLRIFLLLVVFVSTSHCPNHRSTERSTEKDVCLFTLP------PPHTPLPRALIFPCRLG---VCPFADALEALRDATMASSDAAARAAVEPPSGGAQEAGDAKVGVERGRGQVHGEATGRERDGSGVAGGWFSEAALAELVKTLP----LPGRGGVKAGGALESRSEEREGRLDEKVAAGGGVGCSRGSDGGGVSGRGGRWPLGAVDCMEEALEQGILMRQRVDVKKWVLSAITRSGAGXXXXXXXXARGQRG-----LALHPSLLRVVCLYASACIPTPPPGRRASAIMVGQGAVAAVAAAIADDFTMTPIFPTEVTEIIRAVDWSSIESRS---REPLFPGMPPPLHHPSMA-SPTLLSAEDVVVGGTAGDGGWKNREIQKMRGGLIQLGSVTVTTAWEAMPALLATCFALYHTHCSTQRNTPFPGPFR 3483
MP+LQLFDLVAGGAFERALE MG+Q GVWSYLPLFLQMLRDGS++SGAE GDRFDKLLR VVVQNRRADSTEDYLN+A++CC LRK P P+++T ASPV PAG EWD+ V A XXXXXXXX S G ++ RR GKQMDLLLE+ESLEP+QLMS G S + +S A G A VE VG SSESLDLLSQRS LEEELH+LLPVLLAHAPR+RMRE++ ALLRTRFAPSLLHVS MNDPLSLESIVLGVCDAVA P T+ R +RV++RAEELVMRLC LG + S+KVR VL RS G H + D GG +G GG + SHWFWGHLR+SPA QLLD VL +V++L RE S + A+T TVG+L LR+YC L L RPA L +H++ A+ P AL A L XXXX XXXXXXXXXXXXXXXXXXXXX XXXX AGL+ LLLRG+R EA+ +VV LG+ P PL G LR L S S P S+ R + PP +P + R G + P + A GWFSE ALA+ VK LP +P + SE EG A GRW L VDC+EEALEQG+L+R R+D++ WVLS I +G XXXXXXXX G + LHPSLLRVVCLYA AC+P + G GA A F MT + PTE+ EI+RAVDW + ++PLFPGMPPPL HPSM S LL VVVG GG R+ GG G V + + EAMPALLATCFALYHTHC + R +PFP PFR
Sbjct: 51 MPKLQLFDLVAGGAFERALEGMGRQEGGEEGVWSYLPLFLQMLRDGSTKSGAEVGDRFDKLLRELVRVVVQNRRADSTEDYLNIARDCCTHLRKGPTPTTTTASSRMASRLATSSPQPLHSAPSSKTTDSRSASPV----PAGGGGEGAQQGPAMT-EWDVVVAAIDQEKXXXXXXXXXXXXXXXXXSDAGGSVSRRDGKQMDLLLEVESLEPKQLMSSGGRQSPSRGVVSRASSPAVGVGAAXXXXXXXXXXXXVEA-----XXXXXXXXXAVGXXXXXXX----------XSSESLDLLSQRS-LEEELHMLLPVLLAHAPRVRMRESSAALLRTRFAPSLLHVSAMNDPLSLESIVLGVCDAVAAT---PGITATR---------TSHRVSRRAEELVMRLCGLGAIASVKVRQVL---RSGHG---------RHHRQE---------DNGG----------VVG---------------TGGGNAGLNSHWFWGHLRKSPAVTEQLLDTVLAKVEALARETVGXXXXXXXXXYSDRSAGSSTAPATTGTVGELSVALRAYCELVGLGRPAALTERHLQAAMSAPTDALEAVLLXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLYAALLLRGARFEAVAKVVSGALGSTPP--PLTGPDGMDALDALRDAALAA---SESEFPRPPSSPRPSNNTAXXXXXXXXXXXSPPVSPRGGPKLTAARRGSEVMPPLSLAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGWFSEPALADCVKALPPSCSVPVAAAAPGSALAPTVSEGVEGEPPAVATAXXXXXXXX------XXXXXGRWRLCPVDCVEEALEQGLLVRCRIDLRDWVLSTILGAGTXXXXXXXXXXXXXXGAPGGKVDLHPSLLRVVCLYAKACVPPD--------LGAGDGAGKA--------FVMTALLPTEIAEIVRAVDWVGLTVAMPPPKDPLFPGMPPPLPHPSMTPSAGLLQPGGVVVGAPRAVGGGGVRKPGNWTGGGSSRGEVVIVS--EAMPALLATCFALYHTHCISLRRSPFPAPFR 1162
BLAST of mRNA_F-serratus_M_contig115.1264.1 vs. uniprot
Match: A0A6H5KM27_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM27_9PHAE) HSP 1 Score: 360 bits (925), Expect = 3.380e-107 Identity = 266/454 (58.59%), Postives = 303/454 (66.74%), Query Frame = 1
Query: 3616 LVPAVMDVCPELFCPEQRRVVFAQEEPLSLLGGGATTAVGSDSGTAEAPNEEGFQLLDPAFLRRAIGAVWTAPAVAVGILRAMLVCPSEILLAVGEEGLKELLPKVVSGDFPRRSMVACLSSTAWMRLYGHHPNTQGMETWTLNALLQSDTQEAALPRRAVTYDTMCREPMIVFRCQVEVFSCPYLLRILLRILRSLLLASERTIDQAVVAKQRRWEMVMASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCLLVVALGGYSGGEDGTSTTD-----------LASRAQASIQCRKLVCDFVQAMVSECPPLMHLLLRQTLPAEAFVLLLDGVPACRAAALYLGDVMGQQTWEARAFGVRAAALFAERFPTEEAFQACRGALHVLSSMCDSEARAPRGLNTPLAGG 4944
++PAVMDVCPELFCPEQR + ++ AT V SG + E LD AF+RRA GAV AP AV +LRA+L CP LL+ E+ LK +LPK+ DFPRRS VA L WMRLY HP+ Q METWTLNALLQ+D EA LPR AVTY+ MCREP++VFRC+ E SCPYLLRILLR+LRSLLLASERTIDQAVVAK R + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RCLLVVALGG G++ + +A+RAQ CRKLVC+F+Q ++SECPPL+HLLLRQTLP EA LLLDGVPA R A +LGDVM QQ+WEARAFGV+A+AL AERFPTEEA C+GALHVLSSMCDSEA+APRG LA G
Sbjct: 1 MLPAVMDVCPELFCPEQRGDSCDGNDYGDVVD--ATAVVEPPSGKFASGQEITPHPLDKAFVRRATGAVVAAPGGAVDVLRALLACPVPALLSTAEDVLKGVLPKIAGPDFPRRSSVASLCCDVWMRLYDAHPHGQAMETWTLNALLQTDA-EAPLPR-AVTYEIMCREPVLVFRCRGEALSCPYLLRILLRVLRSLLLASERTIDQAVVAKNVREK--------GGEGNDKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWEDVEEGTASVDGRMMSLVQQAIVARCLLVVALGGAGLSAGGSAKEEREGGVVVFGDGIATRAQ----CRKLVCEFLQTLISECPPLLHLLLRQTLPTEALKLLLDGVPASRGATRHLGDVMAQQSWEARAFGVQASALLAERFPTEEACLLCKGALHVLSSMCDSEAQAPRGTLNALAAG 438
BLAST of mRNA_F-serratus_M_contig115.1264.1 vs. uniprot
Match: D7FZF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF5_ECTSI) HSP 1 Score: 344 bits (882), Expect = 1.770e-100 Identity = 288/575 (50.09%), Postives = 331/575 (57.57%), Query Frame = 1
Query: 3514 MLRLTAAAAWGDGELEG--LGDSCCHDRGMANLHAFLVPAVMDVCPELFCPEQRRVVFAQEEPLSLLGGGATTAVGSDSGTAEAPNEEGFQLLDPAFLRRAIGAVWTAPAVAVGILRAMLVCPSEILLAVGEEGLKELLPKVVSGDFPRRSMVACLSSTAWMRLYGHHPNTQGMETWTLNALLQSDTQEAALPRRAVTYDTMCREPMIVFRCQVEVFSCPYLLRILLRILRSLLLASERTIDQAVVAKQRRWEMVMASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCLLVVALGGYSGGEDGTSTTDLASRAQASIQCRKLVCDFVQAMVSECPPLMHLLLR---------------------------QTLPAEAFVLLLDGVPACRAAALYLGDVMGQQTWEARAFGVRAAALFAERFPTEEAFQACRGALHVLSSMCDSEARAPRGLNTPLAGGLGGAGTASTGFSCAGGGSVASPPAALLACGIPPSDLVRETFPYAVNMCQAFPSLTGDTISLIESILHRQ 5151
M+RLTA AW + ++G C D G+A+LHAF++PAVMDVCPELFCPEQR + G T V + SG+ + E LD AF+RRA GAV AP AV +LRA+L CP LL+ E+ LK +LPKV DFPRRS VA L WMRLY HP+ Q METWTLNALLQ+D EA LPR AVTY+TMCREP++VFRC+ E AV+AK RWEMV ASA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + E+GT+T D R + +Q QA+V+ C QTLP EAF LLLDGVPA R +LGDVMGQQ+WEARAFGV+A+AL AERFPTEEA C+GALHVLSSMCDSEA+APRG LA G A P ALLACG+PPS LVRETF +AVN+CQAFPSL GDT+SLIESIL +Q
Sbjct: 1 MIRLTAREAWAERAVDGGXXXXXXCRDEGLASLHAFMLPAVMDVCPELFCPEQRGNSCDDNHYGDAVDG--TAVVEAPSGSFVSGQEITPHPLDKAFVRRATGAVVAAPGGAVDVLRALLACPVPALLSTAEDVLKGVLPKVAGPDFPRRSSVASLCCNVWMRLYDAHPHGQAMETWTLNALLQTDA-EAPLPR-AVTYETMCREPVLVFRCRGE----------------------------AVLAKNSRWEMVCASARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--------------------------------------WEDVEEGTATVD--GRMMSLVQ---------QAIVARCXXXXXXXXXXXXXXXXXXXXXEGGVVVFGDGIATRAQTLPTEAFKLLLDGVPASRGTTRHLGDVMGQQSWEARAFGVQASALLAERFPTEEACLLCKGALHVLSSMCDSEAQAPRGTLNALAAGSAXXXXXXXXXXXXXXXXXA-PSTALLACGMPPSGLVRETFSFAVNICQAFPSLKGDTVSLIESILKKQ 493
BLAST of mRNA_F-serratus_M_contig115.1264.1 vs. uniprot
Match: A0A6H5K9Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Q4_9PHAE) HSP 1 Score: 165 bits (418), Expect = 1.100e-37 Identity = 265/812 (32.64%), Postives = 315/812 (38.79%), Query Frame = 1
Query: 970 ESIVLGVCDAVATVGNPPSATSQRPPRATRRTLKPNRVTQRAEELVMRLCSLGEMTSIKVRSVLVKRRSLPGVCARVTCEILHDAERFLLSVSAASDRGGGSANDGDDDDAIGRSREEGVRSYDYTGALGGAVDD-------------------------VASHWFWGHLRESPARATQLLDAVLDRVKSLCREA-----GAVVSEPNPR------RDASTATVGDLCSTLRSYCALANLARPA-LRPQHVRTAVEVPLVALRAALASRPFFSSRSASDVAAAXXXXEVSDEDNQGGQSGGDWLGCDAAARLEEILLCAIVVTARRLGADAATATXXXXXXXXXXXXXXXXXXXXXFEXXXXEEAERTKWATVGGDPESGVWSCATALRRLVELCRSEAVTAGGGKNEGFSSRRSSSGECFAGLFGTLLLRGSRLEALNEVVGEMLGTAYPVSPLEGVGERGGEVFLRIFLLLVVFVSTSHCPN------HRSTERSTEKDVCLFTLPPPHTPLPRALIFPCRLGVCPFADALEALRDATMASSDAAARAAVEPPSGGAQEAGDAKVGVERGRGQVHGEATGRERDGSGV------------AGGWFSEAALAELVKTLPLPGRGGVKAGGA-----LESRSEEREGRLDEKVAAGGGVGCSRGSDGGGVSGRGGRWPLGAVDCMEEALEQGILMRQRVDVKKWVLSAITRSGAGXXXXXXXXAR----------GQRG-----LALHPSLLRVVCLYASACIPTPPPGRRASAIMVGQGAVAAVAAAIADDFTMTPIFPTEVTEIIRAVDW 3180
+ IVLGVCDAV P T+ TL + V++RAEELVMRLC LG M S+KVR VLVKRRSLPGVCA+V CE+L DA+RF+L+V+AA + SHWFWGHLR+SPA QLLD VL RV++L RE GA + R A+TA VG+LC+ LR+YC L L RPA L +H++ A+ P AL A L A XX XXXXXXXXXXXXXXXXXXXXX XXXX AGL+ LLLRG+R EA+ VV E+LG+ P PL G LR L S S P PP +P + R G + AA V P RG G+ GWFSEAALA+ VK LP P V A A S SE EG A G +G GGRW L VDC+EEALEQG+L+R RVD++ WVLS I +G XXXXXXXX G+ G + LHPSLLRVVCLYA AC+ A + G GA A F MT + PTE+ EI++AVDW
Sbjct: 105 QRIVLGVCDAVTVT---PGITA---------TLTSHNVSRRAEELVMRLCGLGAMASVKVRGVLVKRRSLPGVCAKVACEVLCDADRFVLAVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGLNSHWFWGHLRKSPAVTEQLLDTVLARVEALSRETVGRGGGAAAAACGDRIAGSTTAPATTAPVGELCAALRAYCELVGLGRPAALTERHLQAAMSAPTDALEAMLLLP---------SAAPGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLYAALLLRGARFEAVANVVSEVLGSTTP--PLTGPDGMDALDALRDAALAA---SESEFPRPPXXXXXXXXXXXXXXXXXXXXXSPPVSPRGGPKLASARRG---------------SEAPVAAGAVGVVPXXXXXXXXXXXXXRRRRGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGWFSEAALADCVKALP-PSCSVVAAVAAPCSALAPSVSEGVEGEPPAVATAAWGGAIV-------AAGGGGRWRLCPVDCVEEALEQGLLVRCRVDLRDWVLSTILGAGXXXXXXXXXXXXXXXXXXXXXXGRGGAPGGKVDLHPSLLRVVCLYAKACV--------APDLGAGDGAGKA--------FVMTALLPTEIAEIVQAVDW 851
BLAST of mRNA_F-serratus_M_contig115.1264.1 vs. uniprot
Match: B4L652_DROMO (Uncharacterized protein, isoform A n=6 Tax=Drosophila TaxID=32281 RepID=B4L652_DROMO) HSP 1 Score: 59.3 bits (142), Expect = 9.350e-5 Identity = 54/164 (32.93%), Postives = 82/164 (50.00%), Query Frame = 1
Query: 3763 NEEGFQLLDPAFLRRAIGAVWTAPAVAVGILRAMLVCPSEILLAVGEEGLKELLPKVVSGDFPRRSMVACLSSTAWMRLYGHHPNTQGMETWTLNALLQSDTQEAALPRRAVTYDTMCREPMIVFRCQVEVFSCPYLLRILLRILRSLLLASERTIDQAVVAKQ 4254
+ +G+ L P L RA+ + T P +A+ + + +L P E L + L + LP V D PR V L + W+RL P T W ++ ++ +A L RR +++ EPM V C EVF PY+L ILLRIL+ L AS+ ++ + KQ
Sbjct: 723 HHQGYDLR-PELLTRALKNIQTKPRLAIRLFKRLLQLPPEALAQHAHQ-LVQHLPHVFRKDVPR--YVKDLYNDLWLRLNAVLPTT----FWIMSLRAITNNSDA-LNRRTFANESLL-EPMDVLGCSREVFCSPYMLVILLRILKGSLAASKTYLNVHMQQKQ 876 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig115.1264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig115.1264.1 >prot_F-serratus_M_contig115.1264.1 ID=prot_F-serratus_M_contig115.1264.1|Name=mRNA_F-serratus_M_contig115.1264.1|organism=Fucus serratus male|type=polypeptide|length=1799bp MPELQLFDLVAGGAFERALEDMGQQHHGVWSYLPLFLQMLRDGSSRSGAEback to top mRNA from alignment at F-serratus_M_contig115:605159..643453+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig115.1264.1 ID=mRNA_F-serratus_M_contig115.1264.1|Name=mRNA_F-serratus_M_contig115.1264.1|organism=Fucus serratus male|type=mRNA|length=38295bp|location=Sequence derived from alignment at F-serratus_M_contig115:605159..643453+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig115:605159..643453+ >mRNA_F-serratus_M_contig115.1264.1 ID=mRNA_F-serratus_M_contig115.1264.1|Name=mRNA_F-serratus_M_contig115.1264.1|organism=Fucus serratus male|type=CDS|length=10794bp|location=Sequence derived from alignment at F-serratus_M_contig115:605159..643453+ (Fucus serratus male)back to top |