mRNA_F-serratus_M_contig1149.1254.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1149.1254.1
Unique NamemRNA_F-serratus_M_contig1149.1254.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1149.1254.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 2.000e-47
Identity = 89/180 (49.44%), Postives = 110/180 (61.11%), Query Frame = 1
Query:    1 YARSIGDGYCHYSYNNEACGWDGGDCCECTCVVNPERDASCETNSFLCMDPDSGCVNSS--LLDYANCNGDVGSIGNGFCDSHNNNNEACGWDGGDCCECTCAPDCEGENGYDFY----------CLDPNSKCA---DPTLLEYANCTGHVGWMGDGYCNSYINNEACGWDGGDCCECTC 495
            + R  GDG+C    NNE CG+DGGDCCECTCV   + D SC  NS  C+DP + CV+     +D     G VGS+GNG+CD  NNN E CG+DGGDCCECTC P  + ++G D Y          C+DPN+ C    D TL    NC      +G+G+C+   NNEAC +DGGDCCECTC
Sbjct:   57 FPREFGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAANS-ACIDPSAPCVDDDDVTVDMVENCGYVGSVGNGWCDEENNN-EGCGYDGGDCCECTCQP-LDTDDGTDDYFQNGCGNGFACIDPNAPCVNDDDITLDIVENCDSVA--VGNGFCDMDNNNEACAYDGGDCCECTC 231          
BLAST of mRNA_F-serratus_M_contig1149.1254.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.270e-40
Identity = 83/176 (47.16%), Postives = 105/176 (59.66%), Query Frame = 1
Query:   13 IGDGYCHYSYNNEACGWDGGDCCECTCVVNPERD-----ASCETNSFLCMDPDSGCVNSSLLDYANCNGDVGS-IGNGFCDSHNNNNEACGWDGGDCCECTCAPDCEGENGY------DFYCLDPNSKCADP---TLLEYANCTGHVGWMGDGYCNSYINNEACGWDGGDCCECTC 495
             GDGYC    NN  CG+DGGDCCECTC  NP  D      S +   F C+DPD+ CV+   +        V S +GNG+CD  +NNNE CG+D GDCCECTC    + ++ Y       F C+DP + C D    T+    NC G+V  +GDG+C+ + NNE CG+DGGDCCECTC
Sbjct:   29 FGDGYCQLQNNNAECGYDGGDCCECTCQ-NPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNCVTSDLGNGYCDE-DNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENC-GYVRGLGDGWCDDWNNNELCGYDGGDCCECTC 201          
BLAST of mRNA_F-serratus_M_contig1149.1254.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 4.660e-40
Identity = 75/171 (43.86%), Postives = 106/171 (61.99%), Query Frame = 1
Query:    1 YARSIGDGYCHYSYNNEACGWDGGDCCECTCVVNPERDASCETNSFLCMDPDSGCVNSSLLD--YANCNGDVGSIGNGFCDSHNNNNEACGWDGGDCCECTCAPDCEGENGY-DFYCLDPNSKCADP---TLLEYANCTGHVGWMGDGYCNSYINNEACGWDGGDCCECTC 495
            Y   +G+GYC+ + N E C +D GDCC+CTC +  +  +      F C+DP++ CV+  + +  + +C     + G+GFC+ +NNN E CG+DGGDCCECTC  D   E G  +F C+DP + C D    T     NC   + ++GDGYC++Y NNE C +DGGDCCECTC
Sbjct:  141 YVAGLGNGYCNEANNIEECDYDAGDCCQCTCGIESDDLSDFSCVDFACVDPNAPCVDDDVTEGMFEDCF----NFGDGFCNDYNNN-EQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCM--IEYLGDGYCDTYNNNEICDYDGGDCCECTC 304          
BLAST of mRNA_F-serratus_M_contig1149.1254.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 2.740e-39
Identity = 81/175 (46.29%), Postives = 106/175 (60.57%), Query Frame = 1
Query:   13 IGDGYCHYSYNNEACGWDGGDCCECTCVVNPERD------ASCETNSFLCMDPDSGCVNSSLLDY---ANCNGDVGSIGNGFCDSHNNNNEACGWDGGDCCECTCAPD--CEGENGYDFYCLDPNSKCADP---TLLEYANCTGHVGWMGDGYCNSYINNEACGWDGGDCCECTC 495
            +GDG+C    NNE CG+DGGDCCECTC V  + D       +C    F C+DP + CVN   +      +C  D   +G+G+CD  +NNN AC +DGGDCCECTC P+  C G +G  F C+DP + C D    T+    NC  ++  MG+G+C+   NNE C +DGGDCCECTC
Sbjct:  109 LGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACG-EGFACIDPSAPCVNDDDITVDVDESC--DAVGMGDGYCDM-DNNNAACAYDGGDCCECTCEPNNKCGGRSG--FACIDPGAPCVDDDSVTVDMIDNCD-YLRVMGNGWCDEENNNELCAYDGGDCCECTC 276          
BLAST of mRNA_F-serratus_M_contig1149.1254.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 1.020e-38
Identity = 81/185 (43.78%), Postives = 108/185 (58.38%), Query Frame = 1
Query:   13 IGDGYCHYSYNNEACGWDGGDCCECTCVVNPER------DASCETN---SFLCMDPDSGCVN-----SSLLDYANCNGDVGSIGNGFCDSHNNNNEACGWDGGDCCECTCAPDCEGENGYDFYC-------LDPNSKCADP---TLLEYANCTGHVGWMGDGYCNSYINNEACGWDGGDCCECTC 495
            IG+G C    NNE C +DGGDCCECTC  +P R         C+T     F C+DPD+ CV+     + ++D  +     G IGNG+CD  NN+ E C +DGGDCCECTC      ++GY++YC       +DP ++C D    T  +Y +C G V  +GDG C+   N E CG+DGGDCC+CTC
Sbjct:  166 IGNGACDSLLNNEDCAYDGGDCCECTC--DPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCS----TGQIGNGYCDDSNNSPE-CAYDGGDCCECTCE---SHDDGYEYYCEPGSFACIDPEAECVDDDDNTAEQYEHC-GWVTRIGDGMCDDENNKEECGFDGGDCCDCTC 339          
BLAST of mRNA_F-serratus_M_contig1149.1254.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 7.860e-38
Identity = 81/182 (44.51%), Postives = 105/182 (57.69%), Query Frame = 1
Query:    1 YARSIGDGYCHYSYNNEACGWDGGDCCECTCVVNPERDASCETNSFLCMDPDSGCVNSSLLD---YANCNGDVGSIGNGFCDSHNNNNEACGWDGGDCCECTCAPDCEGENGYD-----------FYCLDPNSKCADP---TLLEYANCTGHVGWMGDGYCNSYINNEACGWDGGDCCECTC 495
            ++  IGDGYC  + N   C +DGGDCC CTC    + D  C    F C+DP++ CV+   +    + NC   V  IGNG+CD  NN  EACG+DGGDCCECTC    E E+ YD           F C+DP++ C D    T+    NC G+V  +G+G+C+   N E CG+DGGDCC CTC
Sbjct:  127 WSTGIGDGYCSENLNTPECAYDGGDCCSCTCESPYDDDWGCMW--FACIDPEAACVDDDDITVDMFENCEYPV-DIGNGWCDEANNI-EACGYDGGDCCECTC----EYESPYDWDDDWDYHCMEFACIDPSAPCVDDDDITVDMVENC-GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTC 299          
BLAST of mRNA_F-serratus_M_contig1149.1254.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 5.640e-37
Identity = 85/191 (44.50%), Postives = 106/191 (55.50%), Query Frame = 1
Query:   13 IGDGYCHYSYNNEACGWDGGDCCECTCVV---------NPERDASCET--NSFLCMDPDSGCVNSSLLD---YANCNGDVGSIGNGFCDSHNNNNEACGWDGGDCCECTC-APDCE------------GENGYDFYCLDPNSKCADP---TLLEYANCTGHVGWMGDGYCNSYINNEACGWDGGDCCECTC 495
            +GDGYC    NNE CG+DGGDCCECTCV          + + D  C +  + F C+DP + CV    +      NC G V  +G+G+C   NNN E CG+DGGDCCECTC AP  +            G  G  F C+DP++ C D    T+    +C      +GDGYCN   NNEAC +DGGDCCECTC
Sbjct:   59 LGDGYCDQDNNNEICGYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAPCVEDDDITADMVENC-GYVRGLGDGWCHEENNN-ELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGGGFACIDPSAACVDDDEVTVGMVESCDTVS--IGDGYCNMDNNNEACAYDGGDCCECTC 245          
BLAST of mRNA_F-serratus_M_contig1149.1254.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.620e-36
Identity = 72/159 (45.28%), Postives = 98/159 (61.64%), Query Frame = 1
Query:   43 NNEACGWDGGDCCECTCVVNPER--DASCETNSFLCMDPDSGCVNSSLLD--YANCNGDVGSIGNGFCDSHNNNNEACGWDGGDCCECTCAPDCEGENGY-DFYCLDPNSKCADP---TLLEYANCTGHVGWMGDGYCNSYINNEACGWDGGDCCECTC 495
            N E C +D GDCC+CTC +  +   D SC    F C+DP++ CV+  + +  + +C     + G+GFC+ +NNN E CG+DGGDCCECTC  D   E G  +F C+DP + C D    T     NC   + ++GDGYC++Y N E C +DGGDCCECTC
Sbjct:    6 NIEECDYDAGDCCQCTCGIESDDLPDFSCV--DFACVDPNAPCVDDDVTEGMFEDCF----NFGDGFCNDYNNN-EQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCM--MEYLGDGYCDTYNNIEICDYDGGDCCECTC 155          
BLAST of mRNA_F-serratus_M_contig1149.1254.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 3.230e-35
Identity = 74/166 (44.58%), Postives = 102/166 (61.45%), Query Frame = 1
Query:   19 DGYCHYSYNNEACGWDGGDCCECTCVVNPERDASCETNSFLCMDPDSGCVNSSLLDYANCNGDVGSIGNGFCDSHNNNNEACGWDGGDCCECTCAP----DCEGENGYDFYCLDPNSKCADPTLL-EYANCTGHVGWMG--DGYCNSYINNEACGWDGGDCCECTC 495
            DG+C    N+ +C +DGGDCCEC+C+  P  D  C +  F C+DPD G    +  +   C  +   + +G+CDS +NN  +C +DGGDCCEC+C      +C G NG  F CLDP   C DP L+ E+ +C    GW+G  DG+C+S +N  +CGWDGGDCC C+C
Sbjct:   94 DGFCDLVNNHPSCDYDGGDCCECSCIDGP--DYGCGSIGFACLDPDCGNTTETAPENTTC--EESWMNDGYCDS-SNNYPSCDYDGGDCCECSCVDGHDYEC-GSNG--FSCLDP--ACFDPALVAEFPDCD--AGWLGLGDGFCDSELNTASCGWDGGDCCVCSC 247          
BLAST of mRNA_F-serratus_M_contig1149.1254.1 vs. uniprot
Match: D8LEX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX5_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.020e-33
Identity = 73/177 (41.24%), Postives = 94/177 (53.11%), Query Frame = 1
Query:   10 SIGDGYCHYSYNNEACGWDGGDCCECTCVVNPERDASCETNSFLCMDPDSGC----------VNSSLLDYANCNGDVGSIGNGFCDSHNNNNEACGWDGGDCCECTCAPDCEGENGY---DFYCLDPNSKCADPTLLE--YANCTGHVGWMGDGYCNSYINNEACGWDGGDCCECTC 495
            + GDG+C    NNE CG+DGGDCCECTCVV+           F C+DP + C          V S ++DY         +G+G CD+ +NN E CG+D GDCCECT              DF C+DP + C D ++    + NC   +  +GDGYC    NNE C +D GDCCE TC
Sbjct:    7 NFGDGFCDDYNNNEQCGYDGGDCCECTCVVSTLWSTESSCTEFACIDPRAPCADDDDITADAVESCIIDY---------LGDGICDT-SNNIETCGYDSGDCCECTXXXXXXXXXXXSCSDFACVDPMASCFDESITVDMFENCDAEL--LGDGYCQESNNNEICDYDFGDCCESTC 171          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1149.1254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S4_ECTSI2.000e-4749.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI87_ECTSI2.270e-4047.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJK5_9PHAE4.660e-4043.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F9_ECTSI2.740e-3946.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEP6_ECTSI1.020e-3843.78Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G3F4_ECTSI7.860e-3844.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE5.640e-3744.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSR3_ECTSI3.620e-3645.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Y7_ECTSI3.230e-3544.58Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LEX5_ECTSI1.020e-3341.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1149contigF-serratus_M_contig1149:266839..267333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue1.1e-28
Seed eggNOG ortholog2880.D7FX77
Hectar predicted targeting categoryother localisation
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929048.1282828-CDS-F-serratus_M_contig1149:266838..2673331622929048.1282828-CDS-F-serratus_M_contig1149:266838..267333Fucus serratus maleCDSF-serratus_M_contig1149 266839..267333 +
1690962681.507018-CDS-F-serratus_M_contig1149:266838..2673331690962681.507018-CDS-F-serratus_M_contig1149:266838..267333Fucus serratus maleCDSF-serratus_M_contig1149 266839..267333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1149.1254.1prot_F-serratus_M_contig1149.1254.1Fucus serratus malepolypeptideF-serratus_M_contig1149 266839..267333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1149.1254.1

>prot_F-serratus_M_contig1149.1254.1 ID=prot_F-serratus_M_contig1149.1254.1|Name=mRNA_F-serratus_M_contig1149.1254.1|organism=Fucus serratus male|type=polypeptide|length=165bp
YARSIGDGYCHYSYNNEACGWDGGDCCECTCVVNPERDASCETNSFLCMD
PDSGCVNSSLLDYANCNGDVGSIGNGFCDSHNNNNEACGWDGGDCCECTC
APDCEGENGYDFYCLDPNSKCADPTLLEYANCTGHVGWMGDGYCNSYINN
EACGWDGGDCCECTC
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mRNA from alignment at F-serratus_M_contig1149:266839..267333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1149.1254.1 ID=mRNA_F-serratus_M_contig1149.1254.1|Name=mRNA_F-serratus_M_contig1149.1254.1|organism=Fucus serratus male|type=mRNA|length=495bp|location=Sequence derived from alignment at F-serratus_M_contig1149:266839..267333+ (Fucus serratus male)
TATGCTAGGTCAATTGGCGACGGATACTGCCATTACAGTTACAACAACGA GGCCTGTGGGTGGGATGGAGGAGACTGCTGTGAATGCACATGTGTTGTAA ACCCCGAAAGAGACGCCAGCTGTGAGACAAACAGCTTCTTGTGTATGGAC CCAGACTCCGGATGCGTTAACTCAAGCCTTCTCGACTATGCCAACTGCAA TGGAGATGTGGGATCCATCGGCAATGGTTTCTGTGACTCCCACAACAACA ACAATGAAGCGTGTGGCTGGGACGGTGGGGACTGCTGCGAGTGCACATGC GCCCCTGATTGTGAGGGTGAAAATGGATATGATTTCTATTGTTTAGACCC AAACTCTAAATGCGCTGACCCAACTCTCCTCGAGTATGCCAACTGTACTG GGCATGTCGGCTGGATGGGCGACGGGTATTGTAATTCCTACATCAATAAC GAGGCTTGTGGCTGGGACGGGGGTGACTGCTGTGAGTGCACGTGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1149:266839..267333+

>mRNA_F-serratus_M_contig1149.1254.1 ID=mRNA_F-serratus_M_contig1149.1254.1|Name=mRNA_F-serratus_M_contig1149.1254.1|organism=Fucus serratus male|type=CDS|length=990bp|location=Sequence derived from alignment at F-serratus_M_contig1149:266839..267333+ (Fucus serratus male)
TATGCTAGGTCAATTGGCGACGGATACTGCCATTACAGTTACAACAACGA
GGCCTGTGGGTGGGATGGAGGAGACTGCTGTGAATGCACATGTGTTGTAA
ACCCCGAAAGAGACGCCAGCTGTGAGACAAACAGCTTCTTGTGTATGGAC
CCAGACTCCGGATGCGTTAACTCAAGCCTTCTCGACTATGCCAACTGCAA
TGGAGATGTGGGATCCATCGGCAATGGTTTCTGTGACTCCCACAACAACA
ACAATGAAGCGTGTGGCTGGGACGGTGGGGACTGCTGCGAGTGCACATGC
GCCCCTGATTGTGAGGGTGAAAATGGATATGATTTCTATTGTTTAGACCC
AAACTCTAAATGCGCTGACCCAACTCTCCTCGAGTATGCCAACTGTACTG
GGCATGTCGGCTGGATGGGCGACGGGTATTGTAATTCCTACATCAATAAC
GAGGCTTGTGGCTGGGACGGGGGTGACTGCTGTGAGTGCACGTGTTATGC
TAGGTCAATTGGCGACGGATACTGCCATTACAGTTACAACAACGAGGCCT
GTGGGTGGGATGGAGGAGACTGCTGTGAATGCACATGTGTTGTAAACCCC
GAAAGAGACGCCAGCTGTGAGACAAACAGCTTCTTGTGTATGGACCCAGA
CTCCGGATGCGTTAACTCAAGCCTTCTCGACTATGCCAACTGCAATGGAG
ATGTGGGATCCATCGGCAATGGTTTCTGTGACTCCCACAACAACAACAAT
GAAGCGTGTGGCTGGGACGGTGGGGACTGCTGCGAGTGCACATGCGCCCC
TGATTGTGAGGGTGAAAATGGATATGATTTCTATTGTTTAGACCCAAACT
CTAAATGCGCTGACCCAACTCTCCTCGAGTATGCCAACTGTACTGGGCAT
GTCGGCTGGATGGGCGACGGGTATTGTAATTCCTACATCAATAACGAGGC
TTGTGGCTGGGACGGGGGTGACTGCTGTGAGTGCACGTGT
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