mRNA_F-serratus_M_contig1148.1253.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1148.1253.1
Unique NamemRNA_F-serratus_M_contig1148.1253.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1148.1253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1148contigF-serratus_M_contig1148:292241..292628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.8338397-CDS-F-serratus_M_contig1148:292240..2926271622929047.8338397-CDS-F-serratus_M_contig1148:292240..292627Fucus serratus maleCDSF-serratus_M_contig1148 292241..292627 +
1690962681.3877082-CDS-F-serratus_M_contig1148:292240..2926271690962681.3877082-CDS-F-serratus_M_contig1148:292240..292627Fucus serratus maleCDSF-serratus_M_contig1148 292241..292627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1148.1253.1prot_F-serratus_M_contig1148.1253.1Fucus serratus malepolypeptideF-serratus_M_contig1148 292241..292627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1148.1253.1

>prot_F-serratus_M_contig1148.1253.1 ID=prot_F-serratus_M_contig1148.1253.1|Name=mRNA_F-serratus_M_contig1148.1253.1|organism=Fucus serratus male|type=polypeptide|length=129bp
RRKDVKHLDITDPEIKSLVNFLTGVGLGGADCKAEIRPYDGNNPNSYSGE
QLTPVEEEDDGSTGSGARSSLDSARPEDQDNSSDDRPDLGPARNPFETND
RRQSTDSDHTERFYPLSNVMASLKSVASR
back to top

mRNA from alignment at F-serratus_M_contig1148:292241..292628+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1148.1253.1 ID=mRNA_F-serratus_M_contig1148.1253.1|Name=mRNA_F-serratus_M_contig1148.1253.1|organism=Fucus serratus male|type=mRNA|length=388bp|location=Sequence derived from alignment at F-serratus_M_contig1148:292241..292628+ (Fucus serratus male)
CGGAGAAAGGACGTTAAGCATCTGGACATCACAGACCCAGAAATTAAGTC
GCTCGTCAACTTTCTCACGGGCGTTGGACTTGGCGGCGCTGATTGCAAAG
CCGAGATTAGGCCGTACGACGGGAACAACCCTAATAGCTACTCGGGAGAG
CAACTGACTCCCGTGGAGGAAGAAGATGATGGAAGCACGGGATCAGGAGC
ACGTTCCTCACTCGATTCGGCAAGACCTGAGGATCAAGACAACAGCAGCG
ACGACCGCCCGGACCTTGGACCAGCGAGGAACCCCTTTGAGACTAATGAC
CGTCGGCAATCCACTGATTCGGATCATACCGAGAGGTTTTACCCTTTATC
AAATGTTATGGCCTCTCTGAAATCGGTCGCCTCGAGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1148:292241..292628+

>mRNA_F-serratus_M_contig1148.1253.1 ID=mRNA_F-serratus_M_contig1148.1253.1|Name=mRNA_F-serratus_M_contig1148.1253.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig1148:292241..292628+ (Fucus serratus male)
CGGAGAAAGGACGTTAAGCATCTGGACATCACAGACCCAGAAATTAAGTC
GCTCGTCAACTTTCTCACGGGCGTTGGACTTGGCGGCGCTGATTGCAAAG
CCGAGATTAGGCCGTACGACGGGAACAACCCTAATAGCTACTCGGGAGAG
CAACTGACTCCCGTGGAGGAAGAAGATGATGGAAGCACGGGATCAGGAGC
ACGTTCCTCACTCGATTCGGCAAGACCTGAGGATCAAGACAACAGCAGCG
ACGACCGCCCGGACCTTGGACCAGCGAGGAACCCCTTTGAGACTAATGAC
CGTCGGCAATCCACTGATTCGGATCATACCGAGAGGTTTTACCCTTTATC
AAATGTTATGGCCTCTCTGAAATCGGTCGCCTCGAGACGGAGAAAGGACG
TTAAGCATCTGGACATCACAGACCCAGAAATTAAGTCGCTCGTCAACTTT
CTCACGGGCGTTGGACTTGGCGGCGCTGATTGCAAAGCCGAGATTAGGCC
GTACGACGGGAACAACCCTAATAGCTACTCGGGAGAGCAACTGACTCCCG
TGGAGGAAGAAGATGATGGAAGCACGGGATCAGGAGCACGTTCCTCACTC
GATTCGGCAAGACCTGAGGATCAAGACAACAGCAGCGACGACCGCCCGGA
CCTTGGACCAGCGAGGAACCCCTTTGAGACTAATGACCGTCGGCAATCCA
CTGATTCGGATCATACCGAGAGGTTTTACCCTTTATCAAATGTTATGGCC
TCTCTGAAATCGGTCGCCTCGAGA
back to top