mRNA_F-serratus_M_contig1146.1249.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A392MNS0_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MNS0_9FABA) HSP 1 Score: 52.0 bits (123), Expect = 3.120e-6 Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 1
Query: 10 CAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTSR 177
C C + K+ R A H RA+ +++V D GPF SLGG+RYFV+FVD SR
Sbjct: 15 CRNCLVDKQARKSFADHIAVRARDKLDIVHSDVCGPFTESLGGNRYFVSFVDEFSR 70
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: UPI001D001203 (uncharacterized protein LOC26513718 n=1 Tax=Drosophila ananassae TaxID=7217 RepID=UPI001D001203) HSP 1 Score: 51.6 bits (122), Expect = 4.350e-6 Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 4 VSCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPA-SLGGSRYFVTFVDSTSR 177
+SC C ++K P T+ RAK ++LV D GPFP SLGGS+YF+TF+D SR
Sbjct: 427 ISCKTCMVSKIHVQPFPSATSNRAKEILDLVHADVCGPFPTLSLGGSKYFLTFIDDKSR 485
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A2K3JX10_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JX10_TRIPR) HSP 1 Score: 48.9 bits (115), Expect = 1.450e-5 Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 1
Query: 10 CAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTS 174
C C + K+ R A H RA+ +++V D GPF SLGG+RY+V+FVD S
Sbjct: 15 CRNCLVDKQARKSFADHIAVRARGKLDIVHSDVCGPFTESLGGNRYYVSFVDEFS 69
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A6H5JFN2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN2_9PHAE) HSP 1 Score: 49.7 bits (117), Expect = 1.890e-5 Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1
Query: 1 LVSCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTSR 177
L C C AK +A H ++ RA+RP L +D GP ASLGGS + +TFV+S SR
Sbjct: 49 LQPCGGCLQAKGKKAGVPHQSSTRAERPHMLWHIDLCGPMTASLGGSFFMITFVESFSR 107
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A151RAL0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RAL0_CAJCA) HSP 1 Score: 49.3 bits (116), Expect = 2.820e-5 Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 7 SCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPA-SLGGSRYFVTFVDSTSR 177
+C +C + K+ R P H R+K +E++ D GPF SLGG+RYF+TF+D S+
Sbjct: 283 TCESCMLGKQARNPFKVHLETRSKDVLEVIYTDVCGPFEVPSLGGNRYFITFIDDFSK 340
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A151RW17_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RW17_CAJCA) HSP 1 Score: 49.3 bits (116), Expect = 2.850e-5 Identity = 23/59 (38.98%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 4 VSCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFP-ASLGGSRYFVTFVDSTSR 177
++C +C + K+ R P H R+K +E++ D GPF +SLGG++YF+TF+D S+
Sbjct: 481 MTCESCMLGKQARNPFKAHLKTRSKDVLEVIYTDVCGPFEVSSLGGNKYFITFIDDFSK 539
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: Q9ZRJ0_TOBAC (Retrotransposon Tto1 DNA n=2 Tax=Nicotiana tabacum TaxID=4097 RepID=Q9ZRJ0_TOBAC) HSP 1 Score: 49.3 bits (116), Expect = 2.860e-5 Identity = 26/59 (44.07%), Postives = 33/59 (55.93%), Query Frame = 1
Query: 1 LVSCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTSR 177
L CA C K+ R +R + ++LV D GPF SLGG+RYFVTF+D SR
Sbjct: 452 LKKCADCLAGKQNRVSFKRFPPSRRQNVLDLVHSDVCGPFKKSLGGARYFVTFIDDHSR 510
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A5N6P6F3_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P6F3_9ASTR) HSP 1 Score: 49.3 bits (116), Expect = 2.860e-5 Identity = 27/57 (47.37%), Postives = 33/57 (57.89%), Query Frame = 1
Query: 10 CAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPF-PASLGGSRYFVTFVDSTSR 177
C +C + K R P T RA P+EL+ D GP P +LGGSRYF+ FVD SR
Sbjct: 659 CDSCLLGKHNRKPFPGKTNYRASSPLELIHTDLCGPISPPTLGGSRYFMLFVDDHSR 715
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: UPI001C8A75FC (uncharacterized protein LOC108096036 isoform X1 n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=UPI001C8A75FC) HSP 1 Score: 48.1 bits (113), Expect = 7.330e-5 Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 4 VSCAACSMAK--EIRAPTAHHTTARAKRPMELVRMDTTGPFPA-SLGGSRYFVTFVDSTSR 177
++C C ++K R PT+ T+ RAK +EL+ D GPFP SLGGS+YF+TF+D SR
Sbjct: 428 MNCKTCMVSKIHVQRFPTS--TSNRAKELLELIHADVCGPFPTQSLGGSKYFLTFIDDKSR 486
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID) HSP 1 Score: 48.1 bits (113), Expect = 7.330e-5 Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 1
Query: 7 SCAACSMAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPA-SLGGSRYFVTFVDSTSR 177
+C C+M K+ R P +T K +EL+ D GP S+GGSRYFVTF+D SR
Sbjct: 440 NCEGCAMGKQHRQPFPKKSTNTTKGLLELIHSDVCGPMDVPSVGGSRYFVTFIDDYSR 497 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1146.1249.1 >prot_F-serratus_M_contig1146.1249.1 ID=prot_F-serratus_M_contig1146.1249.1|Name=mRNA_F-serratus_M_contig1146.1249.1|organism=Fucus serratus male|type=polypeptide|length=51bp MAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTSback to top mRNA from alignment at F-serratus_M_contig1146:35767..35943- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1146.1249.1 ID=mRNA_F-serratus_M_contig1146.1249.1|Name=mRNA_F-serratus_M_contig1146.1249.1|organism=Fucus serratus male|type=mRNA|length=177bp|location=Sequence derived from alignment at F-serratus_M_contig1146:35767..35943- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1146:35767..35943- >mRNA_F-serratus_M_contig1146.1249.1 ID=mRNA_F-serratus_M_contig1146.1249.1|Name=mRNA_F-serratus_M_contig1146.1249.1|organism=Fucus serratus male|type=CDS|length=306bp|location=Sequence derived from alignment at F-serratus_M_contig1146:35767..35943- (Fucus serratus male)back to top |