mRNA_F-serratus_M_contig1143.1233.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1143.1233.1
Unique Name	mRNA_F-serratus_M_contig1143.1233.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot
Match: A0A6H5JBH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH9_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 4.720e-32
Identity = 59/114 (51.75%), Postives = 76/114 (66.67%), Query Frame = 1

Query:    1 MDPGDVSLQMEEMTLVEQILIANVAPLMRVYRLKGGQYAHGGHVANILQDITEFATNLPRLAADIHVLVVRREGAEAESHKAFVARRHKVYHALLWLKENNQYYRDIPTDADAL 342
            MDPG V ++++ +T  E++LIA   P+MRV  LKGGQ  +GGHV N+ QDI+  A  LPRLAAD+ ++++RREG E   HK    RR +V  AL WL  NN YYRDI  D  AL
Sbjct:    1 MDPGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTAL 114

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BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot
Match: A0A6S7G3B5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3B5_PARCT)

HSP 1 Score: 119 bits (298), Expect = 1.480e-30
Identity = 59/114 (51.75%), Postives = 77/114 (67.54%), Query Frame = 1

Query:    1 MDPGDVSLQMEEMTLVEQILIANVAPLMRVYRLKGGQYAHGGHVANILQDITEFATNLPRLAADIHVLVVRREGAEAESHKAFVARRHKVYHALLWLKENNQYYRDIPTDADAL 342
            MDPG V  Q+  +T VE++LI+ V P+MRVYR  GGQ  + GHV N+ QDI  F   LP   AD+ VL+VRR GAE ++H+ F  RRHKV  A+LWLK NN +++DI  D D +
Sbjct:  182 MDPGTVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAE-DTHRDFTVRRHKVLEAVLWLKTNNPFFKDIEIDRDVI 294

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BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.330e-29
Identity = 59/114 (51.75%), Postives = 76/114 (66.67%), Query Frame = 1

Query:    1 MDPGDVSLQMEEMTLVEQILIANVAPLMRVYRLKGGQYAHGGHVANILQDITEFATNLPRLAADIHVLVVRREGAEAESHKAFVARRHKVYHALLWLKENNQYYRDIPTDADAL 342
            MDPG V ++++ +T  E++LIA   P+MRV  LKGGQ  +GGHV N+ QDI+  A  LPRLAAD+ ++++RREG E   HK    RR +V  AL WL  NN YYRDI  D  AL
Sbjct:  152 MDPGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTAL 265

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BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.710e-29
Identity = 58/114 (50.88%), Postives = 76/114 (66.67%), Query Frame = 1

Query:    1 MDPGDVSLQMEEMTLVEQILIANVAPLMRVYRLKGGQYAHGGHVANILQDITEFATNLPRLAADIHVLVVRREGAEAESHKAFVARRHKVYHALLWLKENNQYYRDIPTDADAL 342
            MDPG V ++++ +T  E++LIA   P+MRV  LKGGQ  +GGHV N+ QDI+  A  LPRLAAD+ ++++RREG E   HK    RR +V  AL WL  NN YYRDI  D  A+
Sbjct:   45 MDPGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTAI 158

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BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot
Match: A0A6S7JXT5_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JXT5_PARCT)

HSP 1 Score: 116 bits (291), Expect = 9.160e-29
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 1

Query:    1 MDPGDVSLQMEEMTLVEQILIANVAPLMRVYRLKGGQYAHGGHVANILQDITEFATNLPRLAADIHVLVVRREGAEAESHKAFVARRHKVYHALLWLKENNQYYRDIPTDADAL 342
            MDPG V  Q+  +T VE++LI+ V P+MRVYR  GGQ  + GHV N+ QDI  F   LP   AD+ VL+VRR GAE ++H+ F  RRHKV  A+LWLK NN ++++I  D D +
Sbjct:  167 MDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAE-DTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVI 279

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BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT)

HSP 1 Score: 116 bits (291), Expect = 9.780e-29
Identity = 58/114 (50.88%), Postives = 77/114 (67.54%), Query Frame = 1

Query:    1 MDPGDVSLQMEEMTLVEQILIANVAPLMRVYRLKGGQYAHGGHVANILQDITEFATNLPRLAADIHVLVVRREGAEAESHKAFVARRHKVYHALLWLKENNQYYRDIPTDADAL 342
            MDPG V  Q+  +T VE++LI+ V P+MRVYR  GGQ  + GHV N+ QDI  F   LP   AD+ VL+VRR GAE ++H+ F  RRHKV  A+LWLK NN ++++I  D D +
Sbjct:  156 MDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAE-DTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVI 268

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BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot
Match: UPI00106D8CF5 (uncharacterized protein LOC114518658 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D8CF5)

HSP 1 Score: 118 bits (295), Expect = 1.540e-28
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 1

Query:    1 MDPGDVSLQMEEMTLVEQILIANVAPLMRVYRLKGGQYAHGGHVANILQDITEFATNLPRLAADIHVLVVRREGAEAESHKAFVARRHKVYHALLWLKENNQYYRDIPTDADAL 342
            MDPG V  Q+  +T VE++LI+ V P+M+VYR  GGQ  + GHV N+ QDI  F   LP   AD+ V++VRR GA+ ++HK F  RRHKV+ A+LWLK NN +++DI  D D +
Sbjct:  261 MDPGIVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRRGAD-QTHKDFTVRRHKVFEAILWLKTNNPFFKDIEIDRDVI 373

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BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot
Match: UPI001069E820 (uncharacterized protein LOC114526754 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069E820)

HSP 1 Score: 118 bits (295), Expect = 1.560e-28
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 1

Query:    1 MDPGDVSLQMEEMTLVEQILIANVAPLMRVYRLKGGQYAHGGHVANILQDITEFATNLPRLAADIHVLVVRREGAEAESHKAFVARRHKVYHALLWLKENNQYYRDIPTDADAL 342
            MDPG V  Q+  +T VE++LI+ V P+M+VYR  GGQ  + GHV N+ QDI  F   LP   AD+ V++VRR GA+ ++HK F  RRHKV+ A+LWLK NN +++DI  D D +
Sbjct:  261 MDPGIVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRRGAD-QTHKDFTVRRHKVFEAILWLKTNNPFFKDIEIDRDVI 373

[Close]

BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot
Match: UPI00106CBCF8 (uncharacterized protein LOC114518711 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CBCF8)

HSP 1 Score: 117 bits (293), Expect = 2.810e-28
Identity = 57/114 (50.00%), Postives = 78/114 (68.42%), Query Frame = 1

Query:    1 MDPGDVSLQMEEMTLVEQILIANVAPLMRVYRLKGGQYAHGGHVANILQDITEFATNLPRLAADIHVLVVRREGAEAESHKAFVARRHKVYHALLWLKENNQYYRDIPTDADAL 342
            MDPG V  Q+  +T VE++LI+ V P+M+VYR  GGQ  + GHV N+ QDI  F   LP   AD+ V++VRR+GA+ E+HK F  RRH+V  A+LWLK NN +++DI  D D +
Sbjct:  341 MDPGIVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRQGAD-ETHKDFTVRRHRVLEAILWLKTNNPFFKDIEIDRDVI 453

[Close]

BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot
Match: A0A7D9ETB4_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ETB4_PARCT)

HSP 1 Score: 113 bits (282), Expect = 3.040e-28
Identity = 57/114 (50.00%), Postives = 75/114 (65.79%), Query Frame = 1

Query:    1 MDPGDVSLQMEEMTLVEQILIANVAPLMRVYRLKGGQYAHGGHVANILQDITEFATNLPRLAADIHVLVVRREGAEAESHKAFVARRHKVYHALLWLKENNQYYRDIPTDADAL 342
            MDPG V  Q+  +T VE++LI+ V P+MRVYR  GGQ  + G V N+ QDI  F   LP   AD+ VL+VRR G E ++H+ F  RRHKV  A+LWLK NN +++DI  D D +
Sbjct:  132 MDPGIVPEQLSGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGRVLNLPQDIQSFLKRLPSRVADLPVLIVRRHGTE-DTHRDFTVRRHKVVEAVLWLKTNNLFFKDIEIDRDVI 244

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1143.1233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JBH9_9PHAE	4.720e-32	51.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6S7G3B5_PARCT	1.480e-30	51.75	Uncharacterized protein n=1 Tax=Paramuricea clavat...	[more]
A0A6H5L976_9PHAE	1.330e-29	51.75	ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ...	[more]
A0A6H5J8Y8_9PHAE	1.710e-29	50.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6S7JXT5_PARCT	9.160e-29	50.88	Uncharacterized protein n=2 Tax=Paramuricea clavat...	[more]
A0A7D9LMQ1_PARCT	9.780e-29	50.88	Uncharacterized protein (Fragment) n=1 Tax=Paramur...	[more]
UPI00106D8CF5	1.540e-28	50.00	uncharacterized protein LOC114518658 n=1 Tax=Dendr...	[more]
UPI001069E820	1.560e-28	50.00	uncharacterized protein LOC114526754 n=1 Tax=Dendr...	[more]
UPI00106CBCF8	2.810e-28	50.00	uncharacterized protein LOC114518711 n=1 Tax=Dendr...	[more]
A0A7D9ETB4_PARCT	3.040e-28	50.00	Uncharacterized protein n=1 Tax=Paramuricea clavat...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1143	contig	F-serratus_M_contig1143:249663..250004 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Opisthokonta
Seed ortholog score	106.7
Seed ortholog evalue	7.3e-21
Seed eggNOG ortholog	588596.U9SRZ5
Hectar predicted targeting category	other localisation
EggNOG OGs	2CC8B@1,2S3BW@2759,3A3QP@33154
Best tax level	Opisthokonta
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	342
Cds size	342
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929045.1875405-CDS-F-serratus_M_contig1143:249662..250004	1622929045.1875405-CDS-F-serratus_M_contig1143:249662..250004	Fucus serratus male	CDS	F-serratus_M_contig1143 249663..250004 -
1690962679.8954704-CDS-F-serratus_M_contig1143:249662..250004	1690962679.8954704-CDS-F-serratus_M_contig1143:249662..250004	Fucus serratus male	CDS	F-serratus_M_contig1143 249663..250004 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1143.1233.1	prot_F-serratus_M_contig1143.1233.1	Fucus serratus male	polypeptide	F-serratus_M_contig1143 249663..250004 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1143:249663..250004-
coding sequence from alignment at F-serratus_M_contig1143:249663..250004-

protein sequence of mRNA_F-serratus_M_contig1143.1233.1

>prot_F-serratus_M_contig1143.1233.1 ID=prot_F-serratus_M_contig1143.1233.1|Name=mRNA_F-serratus_M_contig1143.1233.1|organism=Fucus serratus male|type=polypeptide|length=114bp
MDPGDVSLQMEEMTLVEQILIANVAPLMRVYRLKGGQYAHGGHVANILQD
ITEFATNLPRLAADIHVLVVRREGAEAESHKAFVARRHKVYHALLWLKEN
NQYYRDIPTDADAL

mRNA from alignment at F-serratus_M_contig1143:249663..250004-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1143.1233.1 ID=mRNA_F-serratus_M_contig1143.1233.1|Name=mRNA_F-serratus_M_contig1143.1233.1|organism=Fucus serratus male|type=mRNA|length=342bp|location=Sequence derived from alignment at F-serratus_M_contig1143:249663..250004- (Fucus serratus male)
ATGGACCCTGGAGACGTATCCCTACAAATGGAGGAAATGACGTTAGTTGA
GCAGATACTTATCGCCAACGTCGCTCCCCTTATGCGCGTCTACCGCCTCA
AGGGAGGGCAGTATGCGCACGGTGGTCACGTCGCCAACATCTTGCAGGAT
ATCACGGAGTTCGCCACTAATCTGCCCCGCCTCGCCGCCGATATCCACGT
CCTCGTCGTGCGCCGAGAAGGGGCAGAGGCGGAATCCCACAAAGCCTTCG
TGGCGCGGAGGCACAAAGTCTACCATGCCCTCCTGTGGCTGAAGGAAAAC
AACCAGTACTACCGCGACATCCCCACCGATGCCGACGCCCTT

Coding sequence (CDS) from alignment at F-serratus_M_contig1143:249663..250004-

>mRNA_F-serratus_M_contig1143.1233.1 ID=mRNA_F-serratus_M_contig1143.1233.1|Name=mRNA_F-serratus_M_contig1143.1233.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1143:249663..250004- (Fucus serratus male)
ATGGACCCTGGAGACGTATCCCTACAAATGGAGGAAATGACGTTAGTTGA
GCAGATACTTATCGCCAACGTCGCTCCCCTTATGCGCGTCTACCGCCTCA
AGGGAGGGCAGTATGCGCACGGTGGTCACGTCGCCAACATCTTGCAGGAT
ATCACGGAGTTCGCCACTAATCTGCCCCGCCTCGCCGCCGATATCCACGT
CCTCGTCGTGCGCCGAGAAGGGGCAGAGGCGGAATCCCACAAAGCCTTCG
TGGCGCGGAGGCACAAAGTCTACCATGCCCTCCTGTGGCTGAAGGAAAAC
AACCAGTACTACCGCGACATCCCCACCGATGCCGACGCCCTTATGGACCC
TGGAGACGTATCCCTACAAATGGAGGAAATGACGTTAGTTGAGCAGATAC
TTATCGCCAACGTCGCTCCCCTTATGCGCGTCTACCGCCTCAAGGGAGGG
CAGTATGCGCACGGTGGTCACGTCGCCAACATCTTGCAGGATATCACGGA
GTTCGCCACTAATCTGCCCCGCCTCGCCGCCGATATCCACGTCCTCGTCG
TGCGCCGAGAAGGGGCAGAGGCGGAATCCCACAAAGCCTTCGTGGCGCGG
AGGCACAAAGTCTACCATGCCCTCCTGTGGCTGAAGGAAAACAACCAGTA
CTACCGCGACATCCCCACCGATGCCGACGCCCTT