mRNA_F-serratus_M_contig1142.1232.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 1.910e-18 Identity = 50/88 (56.82%), Postives = 65/88 (73.86%), Query Frame = 1
Query: 1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
D + WGRALYALSAPL+FSRLLF+AQ L F G M++V+FSM +++FGVV+++VM GFA+S F L D + TF T L LFK +L
Sbjct: 892 DGDNSWGRALYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMS-FHALFGDVD-TFGGTCLTLFKAML 977
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI) HSP 1 Score: 81.3 bits (199), Expect = 5.200e-16 Identity = 47/88 (53.41%), Postives = 62/88 (70.45%), Query Frame = 1
Query: 1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
D S WG A YALSAPLV +R+LF+AQ L FQG MV+VIF M +LQFG V+++VM GF ++L + R+ +F +TLL LFK +L
Sbjct: 830 DWTSTWGPAFYALSAPLVVARVLFFAQILQFQGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVEDF--GDTLLGLFKAML 915
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 2.480e-15 Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1
Query: 1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
D S WG A YALSAPLV +R+LF+AQ L F G MV+VIF M +LQFG V+++VM GF ++L R+ +F +TLL LFK +L
Sbjct: 847 DWTSTWGPAFYALSAPLVVARVLFFAQILQFHGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVFFRDVADF--GDTLLGLFKAML 932
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: A0A6H5JMG8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG8_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 7.560e-14 Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 1
Query: 1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
DS S WGR LYA+ +PL++ RLL+YAQ +P QGS ++V++SMA + QF VV+ +V+ GFA+S F+L R+ T LL F+ +L
Sbjct: 744 DSDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYSMASELGQFFVVMGVVILGFAMSFFALFRDVKGETLRGALLDAFQAML 831
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: D7FR83_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR83_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 1.250e-12 Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
D S WGR LYA+ +PL++ RLL+YAQ +P QGS ++V++ MA + QF VV+ +V+ GFA+S F+L R+ T LL F+ +L
Sbjct: 653 DPDSSWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYGMASELGQFFVVMGVVILGFAMSFFALFRDVKGETIRGALLDAFQAML 740
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.530e-11 Identity = 34/63 (53.97%), Postives = 50/63 (79.37%), Query Frame = 1
Query: 22 RALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRN 210
RALYALSAPL F+R+LF+AQ LP QG M++V+FSM ++ +FG+++++VM GF S +SL +
Sbjct: 1217 RALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKE 1279
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 9.910e-11 Identity = 32/67 (47.76%), Postives = 50/67 (74.63%), Query Frame = 1
Query: 22 RALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNF 222
RALYALSAPL F+R+LF+ Q LP QG +++V+FSM ++ +FG+++++VM GF S +SL + +
Sbjct: 972 RALYALSAPLAFARILFFVQILPSQGPIIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTTY 1038
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 1.980e-8 Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 19 GRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTL 261
G A YALSAPL+ SR LF+ Q P QG MV IF M V+L+FG V+ +VM GF ++ L R+ +F E+ L LFK +
Sbjct: 659 GPAFYALSAPLLVSRALFFVQIHPLQGPMV--IFRMTTVLLKFGFVMAVVMIGFTMAFHVLFRDFDSF--GESFLELFKAM 735
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI) HSP 1 Score: 56.6 bits (135), Expect = 2.400e-7 Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 19 GRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNF 222
GRAL+ALSAPLVFSR+LF+ QFL QG +++++ + +LQF +VL +M GF +S ++L ++
Sbjct: 583 GRALFALSAPLVFSRVLFFGQFLKRQGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALFEEAKSY 650
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 6.170e-7 Identity = 37/99 (37.37%), Postives = 56/99 (56.57%), Query Frame = 1
Query: 1 DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVE-----------VIFSMAIVVLQFGVVLVIVMTGFALSLFSLLRNDGNFTFDETLLLLFKTLL 264
D S G A YAL+APL+ SR LF+ Q P QG M++ V+F M ++L+FG V+ +++ GF ++ L R+ +F E+ L LFK +L
Sbjct: 832 DWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSF--GESFLDLFKAML 928 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1142.1232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1142.1232.1 >prot_F-serratus_M_contig1142.1232.1 ID=prot_F-serratus_M_contig1142.1232.1|Name=mRNA_F-serratus_M_contig1142.1232.1|organism=Fucus serratus male|type=polypeptide|length=88bp DSGSPWGRALYALSAPLVFSRLLFYAQFLPFQGSMVEVIFSMAIVVLQFGback to top mRNA from alignment at F-serratus_M_contig1142:255119..256545+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1142.1232.1 ID=mRNA_F-serratus_M_contig1142.1232.1|Name=mRNA_F-serratus_M_contig1142.1232.1|organism=Fucus serratus male|type=mRNA|length=1427bp|location=Sequence derived from alignment at F-serratus_M_contig1142:255119..256545+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1142:255119..256545+ >mRNA_F-serratus_M_contig1142.1232.1 ID=mRNA_F-serratus_M_contig1142.1232.1|Name=mRNA_F-serratus_M_contig1142.1232.1|organism=Fucus serratus male|type=CDS|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig1142:255119..256545+ (Fucus serratus male)back to top |