mRNA_F-serratus_M_contig114.1222.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig114.1222.1
Unique NamemRNA_F-serratus_M_contig114.1222.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig114.1222.1 vs. uniprot
Match: A0A6H5JWV5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWV5_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 7.770e-83
Identity = 125/169 (73.96%), Postives = 141/169 (83.43%), Query Frame = 1 
Query:   61 MKVNVPWSRLRQNPRDVREKAAAGYDERNEPPRL-KEAERKVTWDVTDFGRRMAFGGIVGGITGIAFGAMDGHRSIRDDKIGRFPTMALKTKEFMRLTALSGTIFTGFFCAYQGAKYGATLVRKEDDFWNVLIASAISFAPMVPFPVMRNRYPYAAVLVGMDTLNNHVL 564
            M VNVPWS LR NPRD RE+AAA +    + P L K+ E ++ WDVTDFG+RMAFGGIVGG+TGI FGAMDGHR+IRDD +G+FPT ALKTKEF RLTALSGTIFTGFFC YQG KYGA L RKEDDFWNVLIASA SFAPM+  P MR+RYPYAA+L+ MDTLNNH+L
Sbjct:    1 MTVNVPWSTLRPNPRDQRERAAAEFPGGGKAPPLDKDGEPEIAWDVTDFGKRMAFGGIVGGVTGITFGAMDGHRAIRDDSMGKFPTTALKTKEFTRLTALSGTIFTGFFCTYQGMKYGAKLARKEDDFWNVLIASAGSFAPMLVVPAMRSRYPYAAILIAMDTLNNHIL 169
[Close]
BLAST of mRNA_F-serratus_M_contig114.1222.1 vs. uniprot
Match: A0A835YQU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQU0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.570e-42
Identity = 83/167 (49.70%), Postives = 108/167 (64.67%), Query Frame = 1 
Query:   67 VNVPWSRLRQNPRDVREKAA-AGYDERNEPPRLKEAERKVTWDVTDFGRRMAFGGIVGGITGIAFGAMDGHRSIRDDKIGRFPTMALKTKEFMRLTALSGTIFTGFFCAYQGAKYGATLVRKEDDFWNVLIASAISFAPMVPFPVMRNRYPYAAVLVGMDTLNNHVL 564
            VNVPW  LR NPR  R++ + A   + ++P    +A     +D+    R++ FG   GG+TGI FG MD HR I   K G+F T+A K KE  R+TA +GT+F G+F AYQG KYG    R ED F+NV +A+AIS AP+VPFP +R R PY A LV +DTLN+HVL
Sbjct:    6 VNVPWRELRHNPRTERDRLSEAELSDESKPE--SDATFMDRFDMGMMNRKLIFGVACGGVTGIMFGLMDSHRVI--SKTGQFFTLAAKVKETTRMTAFTGTVFGGYFAAYQGIKYGIQAYRGEDTFFNVFMATAISIAPVVPFPALRARLPYMAFLVAIDTLNSHVL 168
[Close]
BLAST of mRNA_F-serratus_M_contig114.1222.1 vs. uniprot
Match: A0A7S2GUV3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GUV3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.500e-10
Identity = 42/119 (35.29%), Postives = 62/119 (52.10%), Query Frame = 1 
Query:  181 VTWDVTDFGRRMAFGGIVGGITGIAFGAMDGHRSIRD-DKIGRFPTMALKTKEFMRLTALSGTIFTGFFCAYQGAKYGATLVRKEDDFWNVLIASAISFAPMVPFPVMRNRYPYAAVLV 534
            V +   D  R + FG  +G ITG+AFG MDG RS+ + + +    + A K K   + T  SG +F  FF ++   KYG  ++    D   V IA A++   +V  P  R   PYAA+L+
Sbjct:  144 VPYSTPDLFRNLTFGVTLGSITGMAFGFMDGMRSVGESNSVLANASNAAKGKYLFQGTVRSGMVFGAFFGSFHAIKYGIRVMSDPGDAAEVSIAGAVTLGGLVVKPATRASLPYAAMLI 262
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig114.1222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWV5_9PHAE7.770e-8373.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQU0_9STRA5.570e-4249.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2GUV3_9STRA4.500e-1035.29Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig114contigF-serratus_M_contig114:664900..667172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog112098.XP_008611229.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2DR8T@1,2S6DK@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003320.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1212
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig114.1222.1prot_F-serratus_M_contig114.1222.1Fucus serratus malepolypeptideF-serratus_M_contig114 665545..667112 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.0078495-UTR-F-serratus_M_contig114:664899..6655441622929042.0078495-UTR-F-serratus_M_contig114:664899..665544Fucus serratus maleUTRF-serratus_M_contig114 664900..665544 -
1690962679.4177852-UTR-F-serratus_M_contig114:664899..6655441690962679.4177852-UTR-F-serratus_M_contig114:664899..665544Fucus serratus maleUTRF-serratus_M_contig114 664900..665544 -
1622929042.1094651-UTR-F-serratus_M_contig114:667112..6671721622929042.1094651-UTR-F-serratus_M_contig114:667112..667172Fucus serratus maleUTRF-serratus_M_contig114 667113..667172 -
1690962679.4738038-UTR-F-serratus_M_contig114:667112..6671721690962679.4738038-UTR-F-serratus_M_contig114:667112..667172Fucus serratus maleUTRF-serratus_M_contig114 667113..667172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929042.0663512-CDS-F-serratus_M_contig114:665544..6657341622929042.0663512-CDS-F-serratus_M_contig114:665544..665734Fucus serratus maleCDSF-serratus_M_contig114 665545..665734 -
1690962679.434625-CDS-F-serratus_M_contig114:665544..6657341690962679.434625-CDS-F-serratus_M_contig114:665544..665734Fucus serratus maleCDSF-serratus_M_contig114 665545..665734 -
1622929042.0777943-CDS-F-serratus_M_contig114:665916..6660281622929042.0777943-CDS-F-serratus_M_contig114:665916..666028Fucus serratus maleCDSF-serratus_M_contig114 665917..666028 -
1690962679.445928-CDS-F-serratus_M_contig114:665916..6660281690962679.445928-CDS-F-serratus_M_contig114:665916..666028Fucus serratus maleCDSF-serratus_M_contig114 665917..666028 -
1622929042.0875804-CDS-F-serratus_M_contig114:666501..6665351622929042.0875804-CDS-F-serratus_M_contig114:666501..666535Fucus serratus maleCDSF-serratus_M_contig114 666502..666535 -
1690962679.4560285-CDS-F-serratus_M_contig114:666501..6665351690962679.4560285-CDS-F-serratus_M_contig114:666501..666535Fucus serratus maleCDSF-serratus_M_contig114 666502..666535 -
1622929042.0981388-CDS-F-serratus_M_contig114:666941..6671121622929042.0981388-CDS-F-serratus_M_contig114:666941..667112Fucus serratus maleCDSF-serratus_M_contig114 666942..667112 -
1690962679.4647899-CDS-F-serratus_M_contig114:666941..6671121690962679.4647899-CDS-F-serratus_M_contig114:666941..667112Fucus serratus maleCDSF-serratus_M_contig114 666942..667112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig114.1222.1

>prot_F-serratus_M_contig114.1222.1 ID=prot_F-serratus_M_contig114.1222.1|Name=mRNA_F-serratus_M_contig114.1222.1|organism=Fucus serratus male|type=polypeptide|length=169bp
MKVNVPWSRLRQNPRDVREKAAAGYDERNEPPRLKEAERKVTWDVTDFGR
RMAFGGIVGGITGIAFGAMDGHRSIRDDKIGRFPTMALKTKEFMRLTALS
GTIFTGFFCAYQGAKYGATLVRKEDDFWNVLIASAISFAPMVPFPVMRNR
YPYAAVLVGMDTLNNHVL*
back to top

mRNA from alignment at F-serratus_M_contig114:664900..667172-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig114.1222.1 ID=mRNA_F-serratus_M_contig114.1222.1|Name=mRNA_F-serratus_M_contig114.1222.1|organism=Fucus serratus male|type=mRNA|length=2273bp|location=Sequence derived from alignment at F-serratus_M_contig114:664900..667172- (Fucus serratus male)
CTCCGTTGTATACTCAGAGAGGCTGCTTGTTCCTGAAGTGGTTGAGGTCC
TTTAAGAGGAATGAAGGTGAATGTTCCTTGGTCTAGGCTTCGGCAAAACC
CTCGAGATGTGAGGGAGAAAGCAGCTGCAGGATATGACGAAAGAAATGAG
CCTCCGCGGTTAAAAGAGGCAGAGCGGAAGGTTACGTGGGACGTGACGGA
CTTCGGCAGGCGGATGGCGTTCGGAGGCATCGTGAGTGCGGCTCTAGATC
TAGCCACGATAATGGCATTTTCTTTGGTAACCTTTTTATTTGAGTGTAAC
GGCGCAGTAGAAACTGCTCCTCGGCTGCAACCTTTCCTGCACACTTAATG
CCATCGATGCTGTTGTTGTTGTTGTTGTTGTAGCCTCAAACTAAAGTAGG
GCGGTCTGTTATAACTCGTACCAGCGTGTGAAGTACCCCGTACAGTCCAC
GGCAATCAAACAGCCGACAGCTCATGTGCTACGCATTTGGTACAATCTAC
TCCGGCAACGAACAGCAGTTGTAGGAGGTCGCCGTGAACGACACCTCCAG
TGTAACCTCCCCATTGCTACGTGCCGCATTTTCGGTCTCGCTATCTTGCT
CATGATGCTCATGCTACTTCTGCATCTTGCGACTCAGGTTGGGGGCATCA
CGGGCATTGCTTTCGGAGCGAGTGAGTGACTACGGTTCTCCCATTTTCGT
GCCCTTTGGCGAATGCGTAATCTGAGACGGACTTCTTGACAGGGAAGACT
CGGTCAACTCCTATAGCAAACCCCGCGATCGACCACTGTATCACCTCGTG
GTATTTGCCTTTTGCGATTTCGTGGTGAATTTAATGTATTTTTGCGATCG
CTCGCTTTTTCGGGTGCGTTGTAATTGGAGTTGGCAGCGTTCCGAGTACC
TCTCCGGGTGCTTCCGAGTTCGAGATGAGCACCCCCTCCCCTGCCCCCCT
GCCCCCCTGCCCCCCCGCAAAGGTCCTTATTGAGGCTCGTTGAATGTTTT
CTTTTTGTTTACCCCTACCCCCAAAACACTACGAAAAATAGAAAAAAATA
TACGCCTTGGTGAAATTTTCTCGCGATGAATTCGCTACAAACAGTATCTA
TCTATTGGACTCTAACTTGCCGCTGGTTGTTTGACTCTTTCCAGTGGACG
GCCATCGATCCATCCGCGACGACAAGATAGGCAGGTTCCCAACCATGGCC
CTGAAGACCAAGGAGTTCATGAGGCTCACCGCGCTCTCTGGTACTATCTT
CACAGGGTGAGGGCGAGCCCACTGCAGAAGGTTGCCACACCACTATGAGA
GACAGGCAGACAAAACGCACCCAACACTCTTATCAAAACCTCATTCCTCT
CCCAACACCGCGCTTTTCTAGGCGTGAGCCATCGACTCATTTCACGACGA
ACGTCGTGCACACGCCCGCCGCACCCTTCCCGCAACAGGTTCTTCTGCGC
CTACCAGGGTGCCAAGTACGGCGCCACGTTGGTCCGAAAAGAGGATGACT
TCTGGAACGTGCTCATCGCATCCGCGATATCTTTCGCCCCCATGGTCCCG
TTCCCCGTCATGCGTAATCGCTATCCGTACGCTGCCGTTCTCGTCGGTAT
GGACACGCTGAATAACCACGTTTTGTAGGGAGGCTGGGGAGAACACGACT
TTTTTTTTTCTTATTATCAATGCCACAAAAGCTCCAAATAGAAATGAGTA
ATAATAATAGTGTTGATGTTGGCGCTAGGGTTTTGCACTGTCTATGAAGG
AGTTGAGTACTTCGGACGAAAGAAGTGAACGTACATTGATTGGTAGTTAC
GATATATAATAGTAAAATATTGAGATGCGTCGAGTTTGAATTAAAAAAAA
AGATCCGCTTTGAGGACGGGAACATTGTGGCTGTATTTGTAGTCCCTCTT
GAGTTATTTTAGAGTTTGAAGAAAATACAGAATGCATCTAGACCTTCTGA
GTTGTCGTGTTGTAAGGTATTAGTAGGCAGATCAGCCATCGAAATTTCTT
CTGCCAAGTGGAGAACTTCGAACCGTGCGTGATGCAGATGCTTCCCCGTC
GGGACCTTGGCGTCCGATAAGCGCTTGAGAAGGTTGCAAAGAGGGAAGCG
TGGCTGGCGATGGATACGATCGATCTTTTTCGAATATTAATAGTGCGTTC
GTTCCCTTGACTCTCGTAAAAATTTCACACGTTTCATTAAAGCTCACGCT
TCACGCAGACCTTCTTGGCGCGATATAATAAAAAATAGAATAAAATATAT
AACAGTCATAAGCAGGACTCTCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig114:664900..667172-

>mRNA_F-serratus_M_contig114.1222.1 ID=mRNA_F-serratus_M_contig114.1222.1|Name=mRNA_F-serratus_M_contig114.1222.1|organism=Fucus serratus male|type=CDS|length=1014bp|location=Sequence derived from alignment at F-serratus_M_contig114:664900..667172- (Fucus serratus male)
ATGAAGGTGAATGTTCCTTGGTCTAGGCTTCGGCAAAACCCTCGAGATGT
GAGGGAGAAAGCAGCTGCAGGATATGACGAAAGAAATGAGCCTCCGCGGT
TAAAAGAGGCAGAGCGGAAGGTTACGTGGGACGTGACGGACTTCGGCAGG
CGGATGGCGTTCGGAGGCATCATGAAGGTGAATGTTCCTTGGTCTAGGCT
TCGGCAAAACCCTCGAGATGTGAGGGAGAAAGCAGCTGCAGGATATGACG
AAAGAAATGAGCCTCCGCGGTTAAAAGAGGCAGAGCGGAAGGTTACGTGG
GACGTGACGGACTTCGGCAGGCGGATGGCGTTCGGAGGCATCGTTGGGGG
CATCACGGGCATTGCTTTCGGAGCGAGTTGGGGGCATCACGGGCATTGCT
TTCGGAGCGATGGACGGCCATCGATCCATCCGCGACGACAAGATAGGCAG
GTTCCCAACCATGGCCCTGAAGACCAAGGAGTTCATGAGGCTCACCGCGC
TCTCTGGTACTATCTTCACAGGTGGACGGCCATCGATCCATCCGCGACGA
CAAGATAGGCAGGTTCCCAACCATGGCCCTGAAGACCAAGGAGTTCATGA
GGCTCACCGCGCTCTCTGGTACTATCTTCACAGGGTTCTTCTGCGCCTAC
CAGGGTGCCAAGTACGGCGCCACGTTGGTCCGAAAAGAGGATGACTTCTG
GAACGTGCTCATCGCATCCGCGATATCTTTCGCCCCCATGGTCCCGTTCC
CCGTCATGCGTAATCGCTATCCGTACGCTGCCGTTCTCGTCGGTATGGAC
ACGCTGAATAACCACGTTTTGTAGGTTCTTCTGCGCCTACCAGGGTGCCA
AGTACGGCGCCACGTTGGTCCGAAAAGAGGATGACTTCTGGAACGTGCTC
ATCGCATCCGCGATATCTTTCGCCCCCATGGTCCCGTTCCCCGTCATGCG
TAATCGCTATCCGTACGCTGCCGTTCTCGTCGGTATGGACACGCTGAATA
ACCACGTTTTGTAG
back to top