mRNA_F-serratus_M_contig114.1217.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5K2P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P8_9PHAE) HSP 1 Score: 169 bits (427), Expect = 1.170e-44 Identity = 90/245 (36.73%), Postives = 143/245 (58.37%), Query Frame = 3
Query: 738 YGENATFEVDESQNDAEIPEMRG-IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
+G++ V +D ++ E +P+ E VG+L W+A TRP++ A + ++ +P HWKA + L Y+ RT+ +G+T+ G M + V++DA++AS RRSV GG VM G + WFSR Q+ +T+EAEYVA+A+++ E+ FLRQV ++P I V E N+GAI+ A N + ++IDV +H +R+ V+ I + +V + QHAD TKA +SF H F++
Sbjct: 81 WGQSVPLPVSVKLSDFDVNEASADVPFRELVGSLMWLATQTRPDIADAARAVARYCPSPKMVHWKAALGILGYVRRTSWMGITFEGGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCVWGGVTWFSRTQKSVTLSTTEAEYVAIADVLKEVLFLRQVWRFILPDASMPCIPVFEDNQGAIQNAHNPIINSNLKHIDVMHHFIRELVERKDITITHVPTQVQHADFLTKASSKQSFALHRDFMM 325
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 168 bits (426), Expect = 1.360e-44 Identity = 86/221 (38.91%), Postives = 135/221 (61.09%), Query Frame = 3
Query: 807 IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
+P+ E VG+L W+A TRP++ + ++ +P HWKA + L Y+ RT+ +G+T+ M + V++DA++AS RRSV GG VM G + WFSR Q+ +T+EAEYVA+A+++ E+ FLRQV M+P I V E N+GAI++A N ++ +++IDV++H +R+ V+ I + V + QHAD TKAI +SF H F++
Sbjct: 98 VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVM 318
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 169 bits (427), Expect = 3.750e-44 Identity = 88/237 (37.13%), Postives = 142/237 (59.92%), Query Frame = 3
Query: 759 EVDESQNDAEIPEMRGIPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
+ DE++ A++P + E VG+L W+A TRP++ + ++ +P HWKA + L Y+ RT+ +G+T+ M + V++DA++AS RRSV GG VM G + WFSR Q+ +T+EAEYVA+A+++ E+ FLRQV M+P I V E N+GAI++ N ++ +++IDV++H +R+ V+ I + +V + QHAD TKAI +SF H F++
Sbjct: 143 DFDENEASADVP------FRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDFVM 373
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE) HSP 1 Score: 167 bits (422), Expect = 3.520e-43 Identity = 85/213 (39.91%), Postives = 133/213 (62.44%), Query Frame = 3
Query: 807 IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSF 1442
+P+ E VG+L W+A TRP++ + ++ +P HWKA + L Y+ RT+ +G+T+ M + V++DA++AS RRSV GG VM G + WFSR Q+ +T+E EYVA+A+++ E+ FLRQV LM+ D + I V E N+GAI++A N ++ +++IDV++H +R+ V+ I + +V S QHAD TKAI +SF
Sbjct: 151 VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 363
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 167 bits (423), Expect = 5.390e-43 Identity = 85/221 (38.46%), Postives = 135/221 (61.09%), Query Frame = 3
Query: 807 IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
+P+ E VG+L W+A TRP++ + ++ +P HWKA + L Y+ RT+ +G+T+ M + V++DA++AS RRSV GG VM G + WFSR Q+ +T+EAEYVA+A+++ E+ FLRQV M+P I V E N+GAI++A N ++ +++IDV++H +R+ V+ I + +V + QHAD TKAI +S H F++
Sbjct: 215 VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKESLGLHRDFVM 435
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE) HSP 1 Score: 165 bits (418), Expect = 1.530e-42 Identity = 86/219 (39.27%), Postives = 132/219 (60.27%), Query Frame = 3
Query: 807 IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARF 1460
+P+ E VG+L W+A TRP++ + ++ +P HWKA + L Y+ RT+ +G+T+ M + V++DA++AS RSV GG VM G + WFSR Q+ +T+EAEYVA A+++ E+ FLRQV M+P I V E N+GAI++A N ++ +++IDV++H +R+ V+ I + +V S QHAD TKAI +SF H F
Sbjct: 190 VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKGADCRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDF 408
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 171 bits (432), Expect = 5.760e-42 Identity = 87/221 (39.37%), Postives = 136/221 (61.54%), Query Frame = 3
Query: 807 IPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
+P+ E VG+L W+A TRP++ + ++ +P HWKA + L Y+ RT+ +G+T+ M + V++DA++AS RRSV GG VM G + WFSR Q+ +T+EAEYVA+A+++ E+ FLRQV M+P I V E N+GAI++A N ++ +++IDV++H +R+ V+ I + +V S QHAD TKAI +SF H F++
Sbjct: 1249 VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVM 1469
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE) HSP 1 Score: 159 bits (403), Expect = 1.360e-41 Identity = 86/238 (36.13%), Postives = 132/238 (55.46%), Query Frame = 3
Query: 756 FEVDESQNDAEIPEMRGIPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
F+ DE D P+ E VG+L W+A TRP + + ++ +P HW A M L Y RT+ G+++ T + L + DA+ AS RRSV GG V GA+ WFS Q+ +T+EAEYVAL ++V E+ FLRQ+ M+P + I + E N+GAI++A+N S+ +++IDV++H +R+ V+ V +V S Q AD TK++ +FE H F++
Sbjct: 60 FDADEVATD--------FPFRELVGSLMWLATQTRPAIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSITQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVEREEFSVMHVPSPNQRADCLTKSLSKDAFESHRDFVM 289
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5L8D6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D6_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.650e-41 Identity = 87/238 (36.55%), Postives = 136/238 (57.14%), Query Frame = 3
Query: 756 FEVDESQNDAEIPEMRGIPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSFEKHARFLL 1466
F+ DE D P+HE VG+L W+A TRP++ T+ ++ +P W A M L Y RT+ G+++ T + + L + DA+ A+ RRSV GG V GA+ WFSR Q+ +T+EAEYVAL ++V E+ FLRQ M+P + I + E N+GAI++A+N S+ ++++DV++H+VR+ V+ I V +V Q AD TK++ +FE H F++
Sbjct: 197 FDADEVTTD--------FPFHELVGSLMWLATQTRPDIANAVRTVARYCASPKLVPWNAAMDILGYARRTSQFGISFQRGTVEGLSLQGYADADFATKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQFWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHVDVRHHLVRELVERKEISVIHVPRRYQRADFLTKSLPKDAFESHREFVM 426
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE) HSP 1 Score: 159 bits (403), Expect = 2.330e-41 Identity = 84/229 (36.68%), Postives = 137/229 (59.83%), Query Frame = 3
Query: 759 EVDESQNDAEIPEMRGIPYHETVGALTWVANMTRPELTYTAHTLPKFGDNPGPEHWKAVMKAL*YLNRTASLGVTYGGATEDNMKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAEYVALAEIVNELRFLRQVSALMVPSIDYN-IRVHEFNEGAIKMAENRFSSRRTRYIDVKYHMVRDAVDGGIIRVEYVKSGEQHADAPTKAIDAKSF 1442
++DE++ A++P + E VG++ W+A TRP++ + ++ +P HWKA + L Y+ RT+ +G+T+ M + V++DA++ RRSV GG VM G + WFSR Q+ +T+EAEYVA+A+++ E+ FLRQV M+P I V E N+GAI++A N ++ +++ID ++H++R V+ I + +V S QHAD TKAI +SF
Sbjct: 60 DLDENEACADVP------FRELVGSVMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKESF 282 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig114.1217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig114.1217.1 >prot_F-serratus_M_contig114.1217.1 ID=prot_F-serratus_M_contig114.1217.1|Name=mRNA_F-serratus_M_contig114.1217.1|organism=Fucus serratus male|type=polypeptide|length=153bp MKLSVWMDANHASCPDTRRSVLGGAVMLSRGAIRWFSRAQRITATATSEAback to top mRNA from alignment at F-serratus_M_contig114:327928..329451+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig114.1217.1 ID=mRNA_F-serratus_M_contig114.1217.1|Name=mRNA_F-serratus_M_contig114.1217.1|organism=Fucus serratus male|type=mRNA|length=1524bp|location=Sequence derived from alignment at F-serratus_M_contig114:327928..329451+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig114:327928..329451+ >mRNA_F-serratus_M_contig114.1217.1 ID=mRNA_F-serratus_M_contig114.1217.1|Name=mRNA_F-serratus_M_contig114.1217.1|organism=Fucus serratus male|type=CDS|length=918bp|location=Sequence derived from alignment at F-serratus_M_contig114:327928..329451+ (Fucus serratus male)back to top |