mRNA_F-serratus_M_contig1139.1210.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1139.1210.1 vs. uniprot
Match: A0A5A7TFU1_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TFU1_CUCME) HSP 1 Score: 195 bits (496), Expect = 9.140e-50 Identity = 172/598 (28.76%), Postives = 271/598 (45.32%), Query Frame = 1
Query: 1 DVGGLMKHSSLGGNSYVVIFVNDCNRFKVVKFAKKKSDTTAALSSLVADYITPQKLSIKCIRTDNGGEFEGEFQRELDRRGITHEHTPPDTPQYNGVAERALGLLREKTIILMEELNDVINVPREKLWAQAMLFSCDVTNKSVATSTDEGKSPHELWFGKFSTADHLRPLGAVGCARQSVREH-KMAPKGEKCVFMGISQNF----PTGTVSVLLVRSRNIV--ERQAVQWIDGSKKTRGDDTGSDDRGMKSAGGERITEEENGVEDLLACDDGGQMAMQATIDKPEPTNRRQAMESQEWDEWWKAEETEMLGMVENCVYKQQVARPKDELVIGTKMIYKRKFGQDGKVEKYKCRLVAQGFWQVEGVHYTEKHTPTLSTASIRMLLAMAVTKDGELRHFYAEQEFLKADIGEEIDIEIPEELQE-----------FPGAVGRLNKAI----YGFEKEEMGKFPYREAVEALMWTATMTRPDIVCAVRAVTRFCENPWQAHKKAVMRIFHHLLHTKEWGTTYGG*DCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRIQEMTASSTSEAEYFALSGVVKEILFLRQ-VQE 1725
+V GLMK SLGG Y V F +D +R K+ + K D + T +KL KCIRTDNGGE+ G F GI H+ TPP + Q NG+A+R L E+ L+ E +P + W +A+ V N + + P+ +W GK + HLR G E K+ K + CVF+G Q+ V L+RSR++V E Q + I E+I E ++ K +P + +A+E + EW A + EM + N + + V K + + K +Y+ K + +YK RLV +GF Q + + + E P + +SIR++L +A + D E+ + FL D+ +EI +E P + ++ +L+K+ G K+ +G R+ ++ + PDI AV V+RF NP + H +AV I +L T T+G D + + YTDSD +D+R+S S ++ A A+SW SR+Q+ ST+EAEY A + KE+L++++ +QE
Sbjct: 407 NVCGLMKTKSLGGALYFVTFTDDHSR-KIWVYTLKTKDQVFKQFHASVERETGEKL--KCIRTDNGGEYCGPFDEYCRNHGIRHQKTPPKSSQLNGIAKRLNRTLVERVRCLLTESQ----LP-QSFWGEALNTVIHVLNLTPCVPLGS-EVPNRIWSGKDISYSHLRVFGCKAFVHVPKDERSKLDAKTKPCVFLGYGQDEFGYRVYHRVKKKLIRSRDVVFVEDQTIADI-----------------------EKIDEPKS---------------------KHKPESYEEAIEDEHKREWNDAMKDEMKSLHANHTF-ELVKLSKGKTALRNKWVYRIKQEEHTSKPRYKARLVVKGFNQKKDIDFDEIFAPVVKMSSIRVVLGLAASLDLEVEQMDVKTAFLHGDLDKEIYMEQPVDFEQKGKEHLMNVSRIDSLKKQLSKSFAMKDLGPTKKVLGIQIVRDRASKKLYMSQ--EPDIAHAVGVVSRFMSNPGKQHWEAVKCIMRYLRGTSRLKLTFG--DGKPVLIGYTDSDMAGEIDSRKSTSSYLMTFADGAVSWQSRLQKCVTLSTTEAEYIAAAEAYKEMLWMKRFIQE 946
BLAST of mRNA_F-serratus_M_contig1139.1210.1 vs. uniprot
Match: A0A151RE46_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RE46_CAJCA) HSP 1 Score: 189 bits (479), Expect = 2.540e-47 Identity = 173/674 (25.67%), Postives = 293/674 (43.47%), Query Frame = 1
Query: 1 DVGGLMKHSSLGGNSYVVIFVNDCNRFKVVKFAKKKSDTTAALSSLVADYITPQKLSIKCIRTDNGGEFEGEFQRELDRRGITHEHTPPDTPQYNGVAERALGLLREKTIILMEELNDVINVPREKL---------WAQAMLFSCDVTNKSVATSTDEGKSPHELWFGKFSTADHLRPLGAVGCARQSVREH--KMAPKGEKCVFMGISQNFPTGTVSVLLVRSRNIVERQAVQWIDGSKKTRGDDTGSDDRGMKSAGGERITEEENGVEDLLACDDGGQMAMQATIDKPEPTNRRQAMESQEWDEWWKAEETEMLGMVENCVYKQQVARPKDELVIGTKMIYKRKFGQDGKVEKYKCRLVAQGFWQVEGVHYTEKHTPTLSTASIRMLLAMAVTKDGELRHFYAEQEFLKADIGEEIDIEIPEELQ-EFPGAVGRLNKAIYGFE------------------------------------------------------KEEMGKFP--------------------------------------YREAVEALMWTATMTRPDIVCAVRAVTRFCENPWQAHKKAVMRIFHHLLHTKEWGTTYGG*DCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRIQEMTASSTSEAEYFALSGVVKEILFL 1710
D+ G + S+ G+ Y + V+D +R V K KS+T + + ++ T K +K IR+DNG EF + +GI H+ + +TPQ N VAER + ++NV R L W+ A+L + + NK + T+ +GKSP E+ K L+ G++ C ++ +H K+ P+ +KCV++GI G +++ L ++ R + + + + D ++ + S E D L+ D + + P + + + ++ W KA + E+ + N + P + VIG+K +YK K+ DG +++YK RLVA+G+ Q EG+ Y + P +IR+LLA+A TK+ L FL D+ EE+ +EIP+ L P V +L+K+IYG + KE K+ YR+ V L++ T TRPDI AV+ +++F NP ++H KA +R+ ++ + G Y + L ++ ++DSD+G C D+R+S++G + L +SW S+ Q + S+SEAEY AL V E+ +L
Sbjct: 600 DIWGPLSICSIHGHKYFLTIVDDFSRNTWVFLMKAKSETRTLIQNFISLTFTQYKKKVKIIRSDNGIEFR--MPDFYNSQGIIHQTSCVETPQQNAVAER--------------KHRHILNVARSLLFHSNLPNVYWSYAVLHAIHLINK-LPTAVLKGKSPFEILNKKTPAYLDLKVFGSL-CFVSTLTQHRNKLDPRAKKCVYLGIKVG-TKGYIALDLTTREILISRNVIFYENIFPFHKVPDI---NKQVDSQVSENF--------DFLSID------IDLPNNYPMEDDVSDSQLAAQFPHWIKAMQDELAALKMNKTWSL-TPLPIGKSVIGSKWVYKNKYNSDGTLQRYKARLVAKGYNQTEGLDYFDTFAPVAKLTTIRLLLAIAATKNWALHQLDINNAFLHGDLTEEVYMEIPQGLAVSDPAMVCKLHKSIYGLKQASRQWFAKLSTFLFNLGYRQSCYDHSLFIKKFNSKSIIILVYVDDLILAGDDAKEIASKYTLDLISDFGLLAAKPALTPMVKTTRLAHDDSPSYADTTGYRKLVGRLLYL-TNTRPDISFAVQQLSQFMSNPTESHYKACIRVLRYIKGSPGQGIFYSS-NSTLQLKGFSDSDWGTCPDSRKSITGYCIYLGNSLVSWKSKKQPTISRSSSEAEYRALGTTVCELQWL 1234
BLAST of mRNA_F-serratus_M_contig1139.1210.1 vs. uniprot
Match: A0A2Z6N6U0_TRISU (Uncharacterized protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6N6U0_TRISU) HSP 1 Score: 188 bits (478), Expect = 3.070e-47 Identity = 161/643 (25.04%), Postives = 276/643 (42.92%), Query Frame = 1
Query: 10 GLMKHSSLGGNSYVVIFVNDCNRFKVVKFAKKKSDTTAALSSLVADYITPQKLSIKCIRTDNGGEF-EGEFQRELDRRGITHEHTPPDTPQYNGVAERALGLLREKTIILMEELNDVINVPREKLWAQAMLFSCDVTNKSVATSTDEGKSPHELWFGKFSTADHLRPLGAVGCAR-QSVREHKMAPKGEKCVFMGISQNFPT----GTVSVLLVRSRNIVERQAVQWIDGSKKTRGDDTGSDDRGMKSAGGERITEEENGVED-----------------------LLACDDGGQMAMQATIDKPEPTNRRQAMESQEWDEWWKAEETEMLGMVENCVYKQQVARPKDELVIGTKMIYKRKFGQDGKVEKYKCRLVAQGFWQVEGVHYTEKHTPTLSTASIRMLLAMAVTKDGELRHFYAEQEFLKADIGEEIDIEIPEELQEFPGAVGRLNKAIYG---------------FEKEEMGKFPYREA-----------------VEALMWTAT----------MTRPDIVCAVRAVTRFCENPWQAHKKAVMRIFHHLLHTKEWGTTYGG*DCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRIQEMTASSTSEAEYFALSGVVKEILFLRQVQE 1725
G + +S GG+ Y + F +D R K K+ A +IKC+RTD GGEF +F GI + T TPQ NGV+ER + KT++ M V + W +A++++ V N+S S + +P E W G + H + G +G + K+ PKG KCV +G+S+ + ++ SR++ E + + + DD G + +++ G TEE+N ++ + +D MQ + + ++ E+ + W KA + E+ + N + + V ++ I K I+K K+ ++G++EKYK RLVA+G+ Q G+ + E P +IR +LA+A ++ + F + FL ++ E + I+ P G V +L KA+YG F +E K P+ V+ L++T + R+ E P + H A R+ +L + ++G Y +CEL +E ++DSD+ LD R++ SG V M+ ISW S+ Q + ST+EAEY + + + ++LR++ E
Sbjct: 443 GPINPTSNGGSKYFITFTDDLTRKTWTYPLKDKASAFDCFKKFKALIEKESDCTIKCLRTDRGGEFTSSKFNEFCSEHGIKRQLTAAYTPQQNGVSER-----KNKTLLNMVRSMLVGKYVPKLFWPEAVVWATYVINRSPTLSVKD-VTPEEAWSGTKPSVSHFKIFGCIGYVHVPEAQRKKLDPKGIKCVHLGVSEESKAYQLYDPIQKKIIISRDL-EEETISEYEQETTPEIDDQGIN---IENEQGHEETEEDNDSDEGNNGATRQLPPRTRNPPGWVHDYVTNLEDSDIDQMQNLVVFCDNSDPHTYEEASKMAVWRKAMDQEIEFIERNDTW-ELVTLSREAKRISVKWIFKTKYNENGEIEKYKARLVAKGYSQQHGIDFNEVFAPVARWDTIRTILAVAASQGWFVYQFDVKSAFLHGELQENVYIDQPPGYGRGDGMVYKLKKALYGLKQAPRAWYSKIESYFVQENFVKCPHEHTLFVKQDKDGSILIVSLYVDDLIFTGNNEAMFESFKKSMKSQFAMTDLGKMRYMERPTEIHLAAAKRVLRYLKGSLDFGILYKT-NCELTLEGWSDSDYAGDLDDRKNTSGYVFMIGSSPISWSSKKQTIVTLSTTEAEYVSAASCACQAIWLRRILE 1073
BLAST of mRNA_F-serratus_M_contig1139.1210.1 vs. uniprot
Match: A0A7N2LG47_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LG47_QUELO) HSP 1 Score: 186 bits (472), Expect = 1.900e-46 Identity = 170/630 (26.98%), Postives = 268/630 (42.54%), Query Frame = 1
Query: 1 DVGGLMKHSSLGGNSYVVIFVNDCNRFKVVKFAKKKSDTTAALSSLVADYITPQKLSIKCIRTDNGGEF-EGEFQRELDRRGITHEHTPPDTPQYNGVAERALGLLREKTIILMEELNDVINVPREKLWAQAMLFSCDVTNKSVATSTDEGKSPHELWFGKFSTADHLRPLGAVGCAR-QSVREHKMAPKGEKCVFMGIS-QNFPT---GTVSVLLVRSRNIVERQAVQWIDGSKKTRGDDTGSDDRGMKSAGGERITEEENGVEDLLACDDGGQMAMQATIDKPEPTNRRQAMESQEWDEWWKAEETEMLGMVENCVYKQQVARPKDELVIGTKMIYKRKFGQDGKVEKYKCRLVAQGFWQVEGVHYTEKHTPTLSTASIRMLLAMAVTKDGELRHFYAEQEFLKADIGEEIDIEIPEELQEFPGAVGRLNKAIYGF------------------------------------------------------EKEEMGKFPYREAVEALMWTATMTRPDIVCAVRAVTRFCENPWQAHKKAVMRIFHHLLHTKEWGTTYGG*DCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRIQEMTASSTSEAEYFALSGVVKEILFL 1710
D+ G +SLGG+ Y + F++D +R V F K KSD A T L +KC+R+DNGGE+ +G F +GI E T P TPQ NGVAER L E+ + +P+ WA A+ + + N+ + E + E+W GK HL+ G V S K+ K + C F+G + F + ++RSRN++ + V + D S D T D + + + +TE G+ +D + Q + P RR + + L + + + + K +YK K DG ++YK RLV +GF Q EG+ YTE +P + ++IR++L M ++ L + FL EEI+ + ++F R K I G E++ M K PY A+ +L++ TRP+I AV V+RF P + H +AV I +L + + + G L ++ Y D+DF +D+R+S +G V L AISW S +Q++ S++EAEY A + V KE+++L
Sbjct: 477 DLWGPSSVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFETFKKWKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERA----RSMRLHAGLPKT-FWADAVSTAAYLINRGPSVPM-EFRLLEEVWSGKEVKFSHLKVFGCVSYVHIDSDACSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVV-SDVTEIDQKKSEFVNLDELTE---GIVQKRGEEDKENVNSQVDLSTPVVEVRRSSRNIR-------------LPQRYSPTLNYLLLTDGGKKALHNKWVYKIKNEYDGS-KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGSSIEEINNLKKQLSKQFAMKDLRAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLDSHFKLSKKQSPKTEVERDHMSKVPYASAIGSLIYAMVCTRPNIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKSSSDTCLCFTG--ASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWASNLQKIVTFSSTEAEYVAATEVGKEMIWL 1080
BLAST of mRNA_F-serratus_M_contig1139.1210.1 vs. uniprot
Match: A0A2N9G413_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G413_FAGSY) HSP 1 Score: 183 bits (464), Expect = 9.810e-46 Identity = 170/613 (27.73%), Postives = 275/613 (44.86%), Query Frame = 1
Query: 1 DVGGLMKHSSLGGNSYVVIFVNDCNRFKVVKFAKKKSDTTAALSSLVADYITPQKLSIKCIRTDNGGEF-EGEFQRELDRRGITHEHTPPDTPQYNGVAERALGLLREKTIILMEELNDVINVPREKLWAQAMLFSCDVTNKSVATSTDEGKSPHELWFGKFSTADHLRPLGAVGCARQSVREH-KMAPKGEKCVFMGISQN------FPTGTVSVLLVRSRNIVERQAVQWIDGSKKTRGDDTGSDDRGMKSAGGERITEEENGVEDLLACDDGGQMAMQATIDKPE-PTNRRQAMESQEWDEWWKAEETEMLGMVENCVYKQQVARPKDELVIGTKMIYKRKFGQDGKVEKYKCRLVAQGFWQVEGVHYTEKHTPTLSTASIRMLLAMAVTKDGELRHFYAEQEFLKADIGEEIDIEIPEELQEFPGAVGRLNKAIYGFEKEEMGKFP-------------------------------YREAVEALMWTATMTRPDIVCAVRAVTRFCENPWQAHKKAVMRIFHHLLHTKEWGTTYGG*DCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRIQEMTASSTSEAEYFALSGVVKEILFLRQV 1719
DV G + SL G Y V FV+D +RF + F +KS+ A T IK +R+D+GGE+ EF+ L G+ H+ + + PQ NGVAER ++E + L N+P+ WA+A + N+ + T + SP E G + L+ G E+ K+ K KC+F+G S+ + LL SR V+ T G+ + T + + ++++ + +D P + +QA ES +W + A + EM + N + V P ++ V+G+K +Y K DG +++YK RLVAQGF Q G+ Y E P ++R L+A++ +D ++ + FL D+ E + + P PG+ L+ YG + + +P YR V +L++ T+TRPDI AV+ V++F +P + H A+ RI +L T + G Y ++AY+D+D+G C DTRRS +G L +SW S+ Q + S++EAEY A+S V EI++LR++
Sbjct: 178 DVWGPPRVGSLTGKRYYVSFVDDWSRFTWIYFLHRKSEVIQVFKQFHAMVFTQFNKKIKILRSDSGGEYIPKEFKAFLASEGVVHQCSCTEQPQQNGVAERKHRHIQE----MARALRLHANLPKV-FWAEAANTVVFLINR-LPTPLLDNVSPLEKLHGYPPKYNLLKIFGCTCYVLLPKTEYSKLDAKSVKCIFLGYSETQKGYRCYDWEAKKPLLTYSRR-VQHPPPMPPPSXTSTPGN--------VSXXXXXXXTPQLSLRRSSRIIRPPDRLSLFSALDPLSIPRSYKQAAESAKWIQ---AMKEEMDALEANETW-DIVPLPTNQPVVGSKWVYSVKLKSDGSLDRYKARLVAQGFSQEYGIDYDETFAPVAKMTTVRTLIAISAIRDWDIFQMDVKNAFLNGDLSETVYMRPP------PGSSYCLSS--YGLQITQSTIWPKTSTSSVVDTPLEVNVKYSKNDGEPITDPTLYRRVVGSLVYL-TVTRPDIAHAVQLVSQFVSDPRRLHLTALHRIIRYLRSTSDLGLPYYK-SALPQLQAYSDADYGGCPDTRRSTTGYCSFLGSSLLSWKSKKQPTVSKSSTEAEYRAMSAVCSEIVWLRRL 761
BLAST of mRNA_F-serratus_M_contig1139.1210.1 vs. uniprot
Match: A0A6H5KN22_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN22_9PHAE) HSP 1 Score: 176 bits (446), Expect = 8.910e-45 Identity = 163/545 (29.91%), Postives = 245/545 (44.95%), Query Frame = 1
Query: 1 DVGGLMKHSSLGGNSYVVIFVNDCNRFKVVKFAKKKSDTTAALSSLV----ADYITPQKLSIKCIRTDNGGE-FEGEFQRELDRRGITHEHTPPDTPQYNGVAERALGLLREKTI---ILMEELNDVINVPR-EKLWAQAMLFSCDVTNKSVATSTDEGKSPHELWFGKFSTADHLRP---LGAVGCARQSVREHKMAPKGEKCVFMGISQNFPTGTVSVLLVRSRNIVERQAVQWIDGSKKTRGDDTGSDDRGMKSAGGERITEEENGVE--DLLACDDGGQMAMQATIDKPEPTNRRQAMESQEWDEWWKAEETEMLGMVENCVYKQQVARPKDELVIGTKMIYKRKFGQDGKVEKYKCRLVAQGFWQVEGVHYTEKHTPTLSTASIRMLLAMAVTKDGELRHFYAEQEFLKADIGEEIDIEIPEELQEFPGAVGRLNKAIYG--------------------FEK---------------------------------EEMGKFPYREAVEALMWTATMTRPDIVCAVRAVTRFCENPWQAH 1434
D+GG +S+GG Y ++ +D R + F K KSD A S + AD I P + I +R+DNGGE F G+F + I E TP +PQYNGVAER LGL+ + I + L + + + ++LWA+AM +C+ N + + + KSP+E+W G+ A H RP L C Q R K+ P+GE C ++G S++ P VL R I E + V W + S ++ + EE G E D + + +A++ + P + S E++ G++ + V VI + IYK K + K K K RLVA+GF Q GV Y E +PT + ASIR+L+A+A E+ HF EQ F+++++ E+ +++P + G V R++K++YG FE+ E G P+RE V +LMW A TRPDI AVR V R P ++H
Sbjct: 19 DLGGRKDVASVGGKHYPMVVKDDFTRRTWLCFLKNKSDAGRAFRSFLVGVRADGI-PSLVEI--VRSDNGGECFGGDFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLSKTDRLWAEAMHLACEAINHTACSPNSDSKSPYEMWHGE---ASHARPYPFLKPAYCRWQ--RPSKLLPRGEACCYVGPSRDHPRDCHRVL-TRVGTIQETRNVTW---------EALPSQLPPLQPSLLLIEVAEEGGEERDDDVEVESQNLVAIKKPAGRSTPRFGTRPRLSAEFE-----------GLLRAGTFALAVKALIGCNVIDARWIYKWKADEISKTVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKCSLEVLHFDIEQVFVQSELDHEVFMKLPPGCELMSGKVVRVDKSLYGLRQACRTFHKRLVLDLKRIGFEQSLSDPLCSSSMMGDEVMGMIPVHVDDIRSVMDDEAAGDVPFREVVGSLMWIANQTRPDISNAVRVVARRSHEPNKSH 534
BLAST of mRNA_F-serratus_M_contig1139.1210.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI) HSP 1 Score: 175 bits (443), Expect = 8.890e-43 Identity = 166/671 (24.74%), Postives = 259/671 (38.60%), Query Frame = 1
Query: 16 MKHSSLGGNSYVVIFVNDCNRFKVVKFAKKKSDTTAALSSLVADYITPQKLSIKCIRTDNGGEFEG-EFQRELDRRGITHEHTPPDTPQYNGVAERALGLLREKTIILM------EELNDVINVPREKLWAQAMLFSCDVTNKSVATSTDEGKSPHELWFGKFSTADHLRPLGAVGCARQSVREHKMAPKGEKCVFMGISQNFPTGTVSVLLVRSRNIVERQAVQWIDGSKKTRGDDTGSDDRGMKSAGGERITEEENGVEDLLACDDGGQMAMQATIDKPEPTNRRQAMESQEWDEWWKAEETEMLGMVENCVYKQQVARPKDELVIGTKMIYKRKFGQDGKVEKYKCRLVAQGFWQVEGVHYTEKHTPTLSTASIRMLLAMAVTKDGELRHFYAEQEFLKADIGEEIDIEIPEELQEFPGAVGRLNKAIYGFEKE--------------------------------------------------------------------------------EMGKF--------------PYREAVEALMWTATMTRPDIVCAVRAVTRFCENPWQAHKKAVMRIFHHLLHTKEWGTTYGG*DCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRIQEMTASSTSEAEYFALSGVVKEILFLRQVQE 1725
M S GG+ Y VIFV+D F+ V F K K + +V +K +R+DNGGE++ +F+ +GI H+ + P TP+ NGVAER + EK + ++ +E +++ + K W T + + DE + D ++ R + +R ++ D + T + C + EP +AM S E ++W +A E E +++N + + P I K+I+K+K DGKV +YK RLV +GF Q G+ Y E + P + SIR L ++A +D E+ F + FL ++ EEI +++P + + G V +L K++YG ++ E GK+ PYREAV +LM+ A +TRPDI+ AV V+R+ E H AV RI + T ++G Y G E + Y+DSDF A DTRRS SG V + ISW S Q++ A ST+EAEY A S KE +++R++ +
Sbjct: 340 MPVKSWGGHRYYVIFVDDKTGFRYVHFMKHKDEVLKNFIDMVKRVEIATGHKVKVLRSDNGGEYKNAKFKAFTTEKGIDHQFSAPHTPEQNGVAERDNRTVMEKALSMLLAKQMPKEACGPLDIDQHKKWP---------TEEINIPNEDESEE-------NMQHPDDVQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRRQLRDRAKLRQPDFYQCT------------------------------VCC-----------TELDEPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTK-TKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTAFLNGELDEEIFMQLPTRVTD-AGNVVKLQKSLYGLKQSPRQWNKRFHQFLCKFNFISSEADRCVYKGNIEGERVLLALYVDDGLVMAKTQQAVEMKNYLLRVAKRFNMEDAKGISTPMEAGKYLVINNNDTSAGMNVPYREAVGSLMFAACVTRPDIMFAVAVVSRYLEQSATEHWTAVKRIIRYAKETADYGIVYDGATAEPLV-IYSDSDFAADPDTRRSTSGYVTVHCGGPISWQSIRQKIVALSTTEAEYVAASDATKEAIWIRRLMK 950
BLAST of mRNA_F-serratus_M_contig1139.1210.1 vs. uniprot
Match: A0A438K1G1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438K1G1_VITVI) HSP 1 Score: 175 bits (443), Expect = 1.000e-42 Identity = 173/686 (25.22%), Postives = 268/686 (39.07%), Query Frame = 1
Query: 1 DVGGLMKHSSLGGNSYVVIFVNDCNRFKVVKFAKKKSDTTAALSSLVADYITPQKLSIKCIRTDNGGEF-EGEFQRELDRRGITHEHTPPDTPQYNGVAERALGLLREKTIILMEELNDVINVPREKLWAQAMLFSCDVTNKSVATSTDEGKSPHELWFGKFSTADHLRPLGAVGCAR-QSVREHKMAPKGEKCVFMGIS-QNFPT---GTVSVLLVRSRNIVERQAVQWIDGSKKTRGDDTGSDDRGMKSAGGERITEEENGVEDLLACDDGGQMAMQATIDKPEPTNRRQAMESQEWDEWWKAEETEMLGMVENCVYKQQVARPKDELVIGTKMIYKRKFGQDGKVEKYKCRLVAQGFWQVEGVHYTEKHTPTLSTASIRMLLAMAVTKDGELRHFYAEQEFLKADIGEEIDIEIPEE--LQEFPGAVGRLNKAIYGF------------------------------------------------------------------------------------------------------------EKEEMGKFPYREAVEALMWTATMTRPDIVCAVRAVTRFCENPWQAHKKAVMRIFHHLLHTKEWGTTYGG*DCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRIQEMTASSTSEAEYFALSGVVKEILFL 1710
D+ G +SLGG+ Y + F++D +R V F K KSD A T L +KC+R+DNGGE+ +G F +GI E T P TPQ NGVAER L E+ + +P+ WA A+ + + N+ + E + P E+W GK HL+ G V S K+ K + C F+G + F + ++RSRN++ + V + D S T SD +TE + + + D E TE + + E V K+ + K +Y+ K DG ++YK RLV +GF Q EG+ YTE +P + ++IR++L M ++ L + FL D+ E++ + PE +Q V +L K++YG E++ M K PY A+ +LM+ TRPDI AV V+RF P + H +A+ I +L + + + G L ++ Y D+DF +D+R+S +G V L AISW S +Q++ ST+EAEY A + KE+++L
Sbjct: 396 DLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAMVETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKTIPGTPQQNGVAERMNRTLNERA----RSMRLHAGLPKT-FWADAVSTAAYLINRGPSVPM-EFRLPEEVWSGKEVKFSHLKVFGCVSYVHIDSDARSKLDAKSKICFFIGYGDEKFGYRFWDEQNRKIIRSRNVIFNEQVMYKDRSTVT------SD-----------VTEIDQKKSEFVNLD----------------------------------ELTENMELTELPVGKK---------ALHNKWVYRIKNEHDGS-KRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQKNLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRWSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAIKWILRYLKGSLDTCLCFTG--ASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGIAISWASNLQKIVTLSTTEAEYVAATEAGKEMIWL 1012
BLAST of mRNA_F-serratus_M_contig1139.1210.1 vs. uniprot
Match: A0A8J6CG45_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CG45_9ROSI) HSP 1 Score: 167 bits (423), Expect = 1.200e-41 Identity = 137/452 (30.31%), Postives = 208/452 (46.02%), Query Frame = 1
Query: 1 DVGGLMKHSSLGGNSYVVIFVNDCNRFKVVKFAKKKSDTTAALSSLVADYITPQKLSIKCIRTDNGGEFEGEFQRELDRRGITHEHTPPDTPQYNGVAERALGLLREKTIILMEELNDVINVPREKLWAQAMLFSCDVTNKSVATSTDEGKSPHELWFGKFSTADHLRPLGAVGCARQSVREH-KMAPKGEKCVFMGISQNFPTG-----TVSVLLVRSRNIV--ERQAVQWIDGSKKTRGDDTGS------------------DDRGMKSAGGERITEEENGVEDLLACDDGGQMAMQAT-------------IDKPEPTNRRQAMESQEWDEWWKAEETEMLGMVENCVYKQQVARPKDELVIGTKMIYKRKFGQDGKVEKYKCRLVAQGFWQVEGVHYTEKHTPTLSTASIRMLLAMAVTKDGELRHFYAEQEFLKADIGEEIDIEIPE 1239
DV GL+K S GG Y V F++DC+R V K K+ A + +KCIRTDNGGE+ G F R+GI H+ TPP TPQ NG+AER L E+ L+ + +PR WA+A+ V N S + + P +WFGK + DHLR G E K+ K +C+F+G + G V LVRSR++V E Q + ID ++K D+G D G S G + I + + ++ ++ +A A D EP +AMES+ D+W +A + E+ + EN + + V P+ + + + +Y+ K +YK RLV +G+ Q +GV + E +P + +SIR +L++A D E+ + FL D+ EE+ +E PE
Sbjct: 77 DVCGLIKVRSHGGALYFVTFIDDCSRKLWVYTLKSKNQVFEVFKQFQASVERETRKKLKCIRTDNGGEYTGSFHEYCLRQGIIHQRTPPKTPQLNGLAERMNRTLIERVRCLLSDAK----LPRS-FWAEALNTVTHVINLSPSVPLRDDV-PDRVWFGKDVSYDHLRVFGCKTFVHVPKDEKSKLDAKTRQCIFIGYGLDGEFGYRLYDPVQKKLVRSRDVVFIEDQTIDDIDKTEKVDSQDSGDLINVNPVPLDSSPDLIQDDVHGDVSDGHQDIDDFDTLMDYVVNDQQQAPIAPPAVPLRRYSSDEYVLLTDGGEPECYEEAMESECKDQWVEAMKDELQSLHENHTF-ELVKLPEGKRALKNRWVYRLKQEDKSSSLRYKARLVVKGYTQKKGVDFEEIFSPVVKMSSIRTILSLAACYDLEVEQMDVKTAFLYGDLEEELYMEQPE 521
BLAST of mRNA_F-serratus_M_contig1139.1210.1 vs. uniprot
Match: A0A2P6V0L8_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V0L8_9CHLO) HSP 1 Score: 171 bits (433), Expect = 2.630e-41 Identity = 159/578 (27.51%), Postives = 245/578 (42.39%), Query Frame = 1
Query: 1 DVGGLMKHSSLGGNSYVVIFVNDCNRFKVVKFAKKKSDTTAALSSLVADYITPQKLSIKCIRTDNGGEFEGEFQREL-DRRGITHEHTPPDTPQYNGVAERALGLLREKTIILMEELNDVINVPREKLWAQAMLFSCDVTNKSVATSTDEGKSPHELWFGKFSTADHL-RPLGAVGCARQSVREHKMAPKGEKCVFMGISQNFPTGTVSVLLVRSRNIV---ERQAVQWIDGSKKTRGDDTGSDDRGMKSAGGERITEEENGVEDLLACDDGGQMAMQATIDKPEPTNRRQAMESQEWDEWWKAEETEMLGMVENCVYKQQVARPKDELVIGTKMIYKRKFGQDGKVEKYKCRLVAQGFWQVEGVHYTEKHTPTLSTASIRMLLAMAVTKDGELRHFYAEQEFLKADIGEEIDIEIPEELQEFPGAVGRLNKAIYGFEKEEMGKFPYREAVEALMWTATMTRPDIVCAVRAVTRFCENPWQAHKKAVMRIFHHLLHTKEWGTTYGG*DCELCMEAYTDSDFGACLDTRRSVSGAVLMLAKRAISWHSRIQEMTASSTSEAEYFALSGVVKEILFLRQV 1719
D+ G + +S GG+ Y ++D V + KSD ++ V L +K +R+DNGGEF E +G+ HE T P +PQ NG AER L EK ++ + +P+ LWA A++ + + N+S + D K+P EL++G D + +P +G A KG K + S ++ SR++ + S K S + G +D +A A I EPT ++A+ + W A + EM ++ N + P I K +YK K +G +E+YK RLV QGF Q EG+ Y E P +++R +L+ A +D +L + FL I EE+ Y V +LM+ + TRPDI AV A+ R NP H A + +L T + G T+G L + + D+D +DTRRS +G + AISW SR+Q A+ST+EAEY A + +KE ++LR++
Sbjct: 1482 DLCGPLPVASAGGSLYFNTILDDFTGMSFVIPLRHKSDAADSIIHTVTMLQRQAGLPVKRVRSDNGGEFCNSTLSEFYTSQGVLHETTNPYSPQQNGKAERLNRTLWEKARPMLSDAG----LPKH-LWADAIVTANYLRNRSPLSGRD--KTPFELFYGTKPDLDPVSQPGRLIGYAANR--------KGYKILLN-----------SGAIITSRDVTFDESKPPKPTSPTSHKPPSQPETSQPEPRRQVRGAARRPASEWQDDAYRITGRSNVAANAAIAN-EPTTMKEALSGPDAAAWQLAMDDEMASLIANDTWTL-CEPPHGTKPIPAKWVYKIKRDSNGNIERYKARLVVQGFRQREGIDYDEVFAPVSKYSTLRTVLSTAAAQDLDLHQLDIKTAFLNGTIDEEVYTH------------------------------SYSALVGSLMYLSICTRPDIAQAVGALARHMANPTTDHWTAAKTVLRYLTGTPDIGITFGAGPPGL--QVFCDADHAGDIDTRRSTTGYAFIFNGGAISWASRLQPTVAASTTEAEYIAAATTIKEGMWLRKL 1999 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1139.1210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1139.1210.1 >prot_F-serratus_M_contig1139.1210.1 ID=prot_F-serratus_M_contig1139.1210.1|Name=mRNA_F-serratus_M_contig1139.1210.1|organism=Fucus serratus male|type=polypeptide|length=497bp MKHSSLGGNSYVVIFVNDCNRFKVVKFAKKKSDTTAALSSLVADYITPQKback to top mRNA from alignment at F-serratus_M_contig1139:285716..288207+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1139.1210.1 ID=mRNA_F-serratus_M_contig1139.1210.1|Name=mRNA_F-serratus_M_contig1139.1210.1|organism=Fucus serratus male|type=mRNA|length=2492bp|location=Sequence derived from alignment at F-serratus_M_contig1139:285716..288207+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1139:285716..288207+ >mRNA_F-serratus_M_contig1139.1210.1 ID=mRNA_F-serratus_M_contig1139.1210.1|Name=mRNA_F-serratus_M_contig1139.1210.1|organism=Fucus serratus male|type=CDS|length=2982bp|location=Sequence derived from alignment at F-serratus_M_contig1139:285716..288207+ (Fucus serratus male)back to top |