mRNA_F-serratus_M_contig1139.1208.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1139.1208.1
Unique NamemRNA_F-serratus_M_contig1139.1208.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: D8LNU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNU1_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 7.140e-85
Identity = 172/378 (45.50%), Postives = 217/378 (57.41%), Query Frame = 2
Query:  236 SYSTVKRQIEVERARSQQEENKRWAQEPGARDVLAQPPFDGIAVD------TPSMLDSLENYLKARRWHHPEGPPRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRG-ARLPSPGN--PLTS--VNLDGRTVNITCTRAILGQEAGMC-----------SGVRDTSGRG-----DGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCV----------DWVSGRGSRLFPRENPFRSLITAEDPLSRSHGAPEIVSSNWGMFVV 1258
            +YST    +E+  AR Q EENK WA+ PGAR VL QPPF+G   D      +  ML+SLE YL+ARRW + E P RRFLSHLLT+PLTLA GL EA +      +      SD  R          + V C+GARAES++PPA WRE LFALP V  + LH IGPE+  P G++     G A     G   P+++  +++  RT +I  TRA++G  AG C           +G    SGRG      G+     AE AV  ADA V FNPG GHPHLR+GW+GALKRL+ TGKP++V+CHS KDLDRD R +       C           +    RG+ L  +ENPFRSL+ +EDPLS   G  ++V  NWGM VV
Sbjct:   29 AYST----LELPEARKQGEENKAWAKTPGARQVLDQPPFEGEDGDIGAARASACMLESLEGYLQARRWPYREEPARRFLSHLLTYPLTLAAGLREARI-----KQQPEYTNSDGRRNK--------LAVVCLGARAESTMPPAYWREALFALPDVSRLSLHLIGPELGLPPGVVAAARPGTAACDGAGTIGPISTAVISVGARTADIAWTRAMVGSSAGGCVTGAEQKPEAAAGSAVGSGRGAATEPGGAGAVEAAEEAVEAADAFVLFNPGLGHPHLRQGWDGALKRLLATGKPIVVSCHSPKDLDRDTRLLREAGAEPCCPPSAANASAGEGNGNRGNGLGAKENPFRSLMASEDPLSVP-GDEDLVWCNWGMMVV 388          
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A835YLS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS8_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.760e-26
Identity = 88/263 (33.46%), Postives = 121/263 (46.01%), Query Frame = 2
Query:  305 WAQEPGARDVLAQPPFDGIAVDTPSMLDSLENYLKARRWHH---PEGPPRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALP-LVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRD 1081
            WA++PG    L  PPFD  A   P  L S E YL +R W +    +    R +SHLLT+PLTLA  L                  S +  RS   AG   + V CIGARAE++LPP LW E LF+   L+    L  IGPE+  P  + P +           P  ++   GR++ +   R +    A   +   D+  R +GS+            DA V F+PG GH HL  GW+     ++ +  P+I+T HS  D  RD
Sbjct:   18 WARQPGIVKALQPPPFDAAA---PPDLSSTEAYLASRFWTNILPSDAAAMRIISHLLTYPLTLAAAL-----------------ASVENTRSFSRAG---LHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRAVKPASSGDTA------PCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSI---------HTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRD 242          
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A7S2S4T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4T4_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.860e-21
Identity = 90/283 (31.80%), Postives = 121/283 (42.76%), Query Frame = 2
Query:  269 ERARSQQEENKRWAQEPGARDVLAQPPFDGIAVDTPSMLD-----SLENYLKARRWH-----HPEGPPRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGK--PLIVTCHSLKDLDRD 1081
            E +R Q  E+  WA+ P  R+ L  PP       TP + D      L+ YL+ R W       P G  RR LSH+L++PL+LA G+H+ GL           A  D+ R          + V C GAR E+ LPP  W ELL A P +  V LH +GP+V    G     +R      PG+  T+      T+ +  ++  L         V D             A         +   NPG GHP LR+GW  +L RL       PL+VT H   D +RD
Sbjct:   47 EESRRQLLEDTAWAKSPAGREALRPPPPXATPA-TPRLADLIQAGDLDGYLRYRGWPPDAVASPAG--RRVLSHVLSYPLSLARGIHKLGL-----------ASGDEGR----------LRVLCAGARGEAGLPPQWWMELLHACPALSHVTLHFVGPQVQE--GPPRVLERPTSAQGPGHHRTTP-----TLTLASSQTTL-------EAVDD-------------ALLHPPPTTLVWMSNPGLGHPSLRKGWAASLTRLAQAEPRLPLLVTSHHALDQERD 278          
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: K8YPB9_NANGC (Mrna processing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPB9_NANGC)

HSP 1 Score: 92.4 bits (228), Expect = 8.060e-17
Identity = 101/347 (29.11%), Postives = 133/347 (38.33%), Query Frame = 2
Query:  305 WAQEPGARDVLAQPPFD------GIAVDTPSMLDSLENYLKARRWHHPE------GPPRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSG--------------------------LMPPTDRGARL-PSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCVDWVSGRGSR-----LFPRENPFRSLITAEDPLSRSH 1213
            W  +P     L QPP        G    + S   +LE Y++ R+W           P  R LSHLL++PLTLA  L              S   SD       + G     VA IGARAE++LP A W+E+L   P +    LH +GPEV  P+                           L P      RL PS   P +S +  G       T + L                 D    +  ++ + A   A V FNPG GHP L + W+  L+ L     P++ T HS +D DRD   +   AE    D  SG G       + P  NPF S     DPL+  H
Sbjct:   22 WLSKP-TNSRLIQPPAPSAFHAAGEGPSSTSPPPTLEEYVRRRQWAGKNTETLLASPGLRVLSHLLSYPLTLAHYLP-------------SLHGSDTSSAKAGSPGEV-CHVAIIGARAEATLPDAWWQEVLCLQPGLFC--LHMVGPEVYDPATRAGRESVRLDPQRQLWMHRRQGMYHVLAPDLVSSFRLSPSSSPPASSASSPGVAATPAPTASSL-----------------DPVAPSQASDASPAAVSAAVLFNPGLGHPALAKAWKPTLQCLQAAKVPILWTAHSAEDRDRDVAWLSGGAE----DKESGFGDLRVEWLVAPGPNPFASRKLVVDPLNAQH 330          
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A4D9CVF1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.380e-14
Identity = 103/349 (29.51%), Postives = 131/349 (37.54%), Query Frame = 2
Query:  305 WAQEPGARDVLAQPPFD------GIAVDTPSMLDSLENYLKARRWHHPE------GPPRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSG--------------------------LMPPTDRGARL-PSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERS---C----VDWVSGRGSRLFPRENPFRSLITAEDPLSRSH 1213
            W  +P     L QPP        G    + S   +LE Y++ R+W           P  R LSHLL++PLTLA  L              S   SD       + G  S  VA IGARAE++LP A W+E+L   P +    LH +GPEV  P+                           L P      RL PSP  P  S +  G  V  T                   S                A   A V FNPG GHP L E W+  L+ L     P++ T HS +D DRD   +   AE +   C    V+W+      + P  NPF S     DPL+  H
Sbjct:  835 WLSKP-TNSRLIQPPAPSAFHDAGEGPSSTSPPPTLEEYVRRRQWAGKSTETLLASPGLRVLSHLLSYPLTLAHYLP-------------SLYGSDTASAKVGSPGGVSH-VAIIGARAEATLPDAWWQEVLCMQPGLFC--LHMVGPEVYDPATRAGRESVRLDPQRQLWMHRRQGLYHVLAPDLVSSFRLSPSPSPPALSASSPG--VAATXXXXXXXXXXXXXXXXXXXS---------------PAALSAAVLFNPGLGHPALAEAWKPTLQCLQAAKVPVLWTAHSAEDRDRDVACLSGGAEDNESGCGDMRVEWL------VAPGPNPFASRKLVVDPLNAQH 1143          
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A1X2H5S1_SYNRA (zf-Mss51 domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H5S1_SYNRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.070e-12
Identity = 76/283 (26.86%), Postives = 117/283 (41.34%), Query Frame = 2
Query:  446 RFLSHLLTFPLTLATGLHEA---GLGFPLCSEASSRAES---------DQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCVDWVSGRGSRLFPRENPFRSLITAEDPLSRSHGAPEIVSSNWGMFVV 1258
            R +S LLT+P+T+A+ LHE+    LG  +  E      +         +  +       S +I +  +GARAE++LPP +W +L +  P   F  +H IGPE   P G  P T             TSVN           R +   +  +     +T    D               D    F+PG GHP  RE W+ A+++++ T  P+ +T     D+  D   V    +    DWV      + P EN FRSL    + L       E + +NWG++ +
Sbjct:  171 RHISKLLTYPITVASVLHESCPYQLGKEITPEGMRSISALRTVLYPRNEVTKDGVSLVRSETINLYVVGARAEATLPPHIWLQLAYLFPHTPF-HVHMIGPEAL-PPGKEPYT-------------TSVN----------ERLVFTYDRALYQDFHETVDSFD------------PYTDLFFLFSPGIGHPAAREDWKQAIQKVLETKCPIFLTGFDEADVQTDVAAVEEDYQGE-FDWV------MKPTENRFRSLKRDVNLLDLR----ETIFANWGIWAI 405          
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A077W6J4_9FUNG (zf-Mss51 domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077W6J4_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 2.250e-12
Identity = 71/283 (25.09%), Postives = 119/283 (42.05%), Query Frame = 2
Query:  446 RFLSHLLTFPLTLATGLHEA---GLGFPLCSEASSRAES---------DQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCVDWVSGRGSRLFPRENPFRSLITAEDPLSRSHGAPEIVSSNWGMFVV 1258
            R +S LLT+P+T+A+ LH++    LG  + SE      +         +  +       S +I V  +GARAE+SLPP +W +L +  P   F  +H +GP+   PS                 P T      +++N    R +   +  M     +              E      D    F+PG GHP  REGW+ ++++ + T  P+ +T +   D++ D   V    +    DWV      + P EN FRSL    + +       + + +NWG++ +
Sbjct:  206 RHVSKLLTYPITIASVLHQSCPYKLGKEITSEGMRSISALRTILYPRNEVAKDGVSLVRSETINVYIVGARAEASLPPYIWLQLAYLFPHTPF-HIHMVGPDALSPSQ---------------QPYT------KSLN---ERLMFTYDNSMYHDYHEKI------------EEFDPYTDLFFLFSPGIGHPSAREGWKQSIQKALETKCPIFITGYDQADVNADVAAVEEDYQGE-FDWV------MRPTENEFRSLKRDVNLMD----VRQTIFANWGLWGI 440          
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A2P4XZM3_9STRA (Mss51 like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XZM3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.490e-11
Identity = 63/224 (28.12%), Postives = 90/224 (40.18%), Query Frame = 2
Query:  611 IGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCVDWVSGRGSRLFPRENPFRSLITAEDPLSRSHGAPEIVSSNWGMFVVPSGTKSSQ 1282
            IGARAE+ +P  LW EL F  P   F                      G +L     P+ S      T        I   +  M +G+              + E  +   DA V +NPG GHPHLRE WE  L+ ++ +GKP+++T  SL+D  RD   +  +   S V        R   ++N FRSL    DP +        + +N  + VV  GT   +
Sbjct:  192 IGARAEAMMPRYLWDELSFFHPGRQF----------------------GIKLVGDHVPVMSARKKTPTTRENENEFI---QLEMINGLYHK-----------IEETKLGTPDAFVLYNPGVGHPHLRESWEPTLQAVLASGKPVLITSFSLEDQQRDITALQELVANSPVLKQHELRFRCRAKQNSFRSLKYQLDPSN----VDTPIQTNNRVMVVQLGTDDKE 375          
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A8K1C4M7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4M7_PYTOL)

HSP 1 Score: 75.1 bits (183), Expect = 5.550e-11
Identity = 84/304 (27.63%), Postives = 121/304 (39.80%), Query Frame = 2
Query:  317 PGARDVLAQ---PPFDGIAVDTPSMLDSLENYLKARRWHHPEGP-------PRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCVDWVSGRGSRLFPRENPFRSLITAEDP 1198
            P AR VL +   P     ++D  S + + EN+++     H + P        RR +S   TFP+TL++ L       P   +A+             T  S  +T+  +GARAE+ +P  +W EL    P   F  +  +G  V       P   R  R           ++D R    TCT        G    V  T             E +    DA V FNPG GHPHLRE W   +  ++ +GKP ++T  S +D  RD   +  +     V ++ G      P  N FRSL    DP
Sbjct:  105 PAARKVLTEVVTPAQRETSID--SAITTWENFVRL----HTKDPVWLGDRCARRLVSAAYTFPMTLSSLL-------PHLLDAT-------------TTDSKDLTLHVVGARAEAMMPKHIWDELARQRPDYRF-KMWLVGDHV-------PKLPRKKRQ-------NCDDVDSRLTIDTCT--------GFYHDVAST-------------ELSSTLPDAYVLFNPGVGHPHLRELWRPTMDLVLNSGKPALLTSFSERDQQRDLNALRELYAHHSVRFLVG------PGRNTFRSLQYQLDP 340          
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A067MQR0_9AGAM (zf-Mss51 domain-containing protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MQR0_9AGAM)

HSP 1 Score: 74.3 bits (181), Expect = 1.790e-10
Identity = 89/300 (29.67%), Postives = 125/300 (41.67%), Query Frame = 2
Query:  443 RRFLSHLLTFPLTLATGLHEAGLGFPLCSE-----------ASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHP--SGLMP-PTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREG----------WEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSC-VDWVSGRGSRLFPRENPFRSL---ITAEDPLSRSHGAPEIVSSNWGMFVV 1258
            RR  S LLT+P+T+A+ LHE   GF + ++           A   A         +T     + +  +GARAESSLPP +W +L    P   F  L+ IGP+V+ P  S   P PT +G   P    P+++     RT +      +      +   +  TS R   S V A         DA   F PGFG P               W   L  L+ T  P+ VT  S  D++RD R +  V   S   DWV      + P ENPF S    +   DP         +V +NWG++ +
Sbjct:  191 RRHASKLLTYPITVASLLHENS-GFTIRNQRVTPEGLRSFAALRMALHQPPSVEVETEPRPPMRLFILGARAESSLPPHVWEQLSHLFPGASF-HLYMIGPQVTLPANSSAQPAPTAKGVYEPPTLKPVSN---QSRTRDEQIQFGVPSSTVAVSPTLTITSLRASYSEVHAHFGPHDPYTDAFFAFCPGFGFPSPTSPPDLQIAAPAEWGPVLPLLLETKCPVFVTGFSPTDVERDVRSLENVPGVSGEFDWV------VTPGENPFGSEKWEVADFDPRV-------MVKTNWGVWGI 472          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNU1_ECTSI7.140e-8545.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLS8_9STRA1.760e-2633.46Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2S4T4_9STRA3.860e-2131.80Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K8YPB9_NANGC8.060e-1729.11Mrna processing protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CVF1_9STRA1.380e-1429.51Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1X2H5S1_SYNRA1.070e-1226.86zf-Mss51 domain-containing protein n=1 Tax=Synceph... [more]
A0A077W6J4_9FUNG2.250e-1225.09zf-Mss51 domain-containing protein n=2 Tax=Lichthe... [more]
A0A2P4XZM3_9STRA1.490e-1128.13Mss51 like protein n=1 Tax=Phytophthora palmivora ... [more]
A0A8K1C4M7_PYTOL5.550e-1127.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067MQR0_9AGAM1.790e-1029.67zf-Mss51 domain-containing protein n=1 Tax=Botryob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1139contigF-serratus_M_contig1139:228018..230305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue2.7e-11
Seed eggNOG ortholog35128.Thaps8560
Hectar predicted targeting categoryother localisation
EggNOG OGs29PDH@1,2RWR3@2759,2XDZB@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size1547
Cds size1125
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1139.1208.1prot_F-serratus_M_contig1139.1208.1Fucus serratus malepolypeptideF-serratus_M_contig1139 228178..230043 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.834921-UTR-F-serratus_M_contig1139:228017..2281771622929039.834921-UTR-F-serratus_M_contig1139:228017..228177Fucus serratus maleUTRF-serratus_M_contig1139 228018..228177 +
1690962678.2109122-UTR-F-serratus_M_contig1139:228017..2281771690962678.2109122-UTR-F-serratus_M_contig1139:228017..228177Fucus serratus maleUTRF-serratus_M_contig1139 228018..228177 +
1622929039.8876953-UTR-F-serratus_M_contig1139:230043..2303051622929039.8876953-UTR-F-serratus_M_contig1139:230043..230305Fucus serratus maleUTRF-serratus_M_contig1139 230044..230305 +
1690962678.26512-UTR-F-serratus_M_contig1139:230043..2303051690962678.26512-UTR-F-serratus_M_contig1139:230043..230305Fucus serratus maleUTRF-serratus_M_contig1139 230044..230305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.854274-CDS-F-serratus_M_contig1139:228177..2284261622929039.854274-CDS-F-serratus_M_contig1139:228177..228426Fucus serratus maleCDSF-serratus_M_contig1139 228178..228426 +
1690962678.2247522-CDS-F-serratus_M_contig1139:228177..2284261690962678.2247522-CDS-F-serratus_M_contig1139:228177..228426Fucus serratus maleCDSF-serratus_M_contig1139 228178..228426 +
1622929039.876807-CDS-F-serratus_M_contig1139:229167..2300431622929039.876807-CDS-F-serratus_M_contig1139:229167..230043Fucus serratus maleCDSF-serratus_M_contig1139 229168..230043 +
1690962678.2419274-CDS-F-serratus_M_contig1139:229167..2300431690962678.2419274-CDS-F-serratus_M_contig1139:229167..230043Fucus serratus maleCDSF-serratus_M_contig1139 229168..230043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1139.1208.1

>prot_F-serratus_M_contig1139.1208.1 ID=prot_F-serratus_M_contig1139.1208.1|Name=mRNA_F-serratus_M_contig1139.1208.1|organism=Fucus serratus male|type=polypeptide|length=375bp
MVIQKVLSHIRRIRDSGSNYLRCHASYSTVKRQIEVERARSQQEENKRWA
QEPGARDVLAQPPFDGIAVDTPSMLDSLENYLKARRWHHPEGPPRRFLSH
LLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVAC
IGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRGA
RLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVV
AAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHS
LKDLDRDARQVHAVAERSCVDWVSGRGSRLFPRENPFRSLITAEDPLSRS
HGAPEIVSSNWGMFVVPSGTKSSQ*
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mRNA from alignment at F-serratus_M_contig1139:228018..230305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1139.1208.1 ID=mRNA_F-serratus_M_contig1139.1208.1|Name=mRNA_F-serratus_M_contig1139.1208.1|organism=Fucus serratus male|type=mRNA|length=2288bp|location=Sequence derived from alignment at F-serratus_M_contig1139:228018..230305+ (Fucus serratus male)
GCGCGTATACCTTACAAACTGAGCAGAGCAGTTAGATTTTTAAGGTTTCC CAGAAAAAGTCGTGACTGGGTCTTTGGTTTCAGGGTCGGCTCCCGTTAGA TTGTATCCCTGCTGGGGGTTATTTTGCACAACCCAAGAGCACCAACAGCT TCAAAAGGTCATGGTCATTCAGAAAGTACTCTCGCATATTCGACGGATCC GAGACTCTGGGAGTAATTATTTGCGGTGCCATGCATCATATTCGACAGTG AAAAGGCAGATCGAAGTGGAAAGGGCGCGATCACAGCAGGAGGAGAACAA GCGATGGGCCCAGGAACCAGGAGCCCGCGACGTGCTTGCTCAGCCGCCGT TCGACGGGATCGCGGTAGACACACCTTCCATGCTGGATTCCCTTGAGAAC TATCTGAAGGTCCGCCATCATCTTGAACACGCGTGCCGCGTGTTGTGTCG CCTGTCAAACAGCAGGCTTACTTTCAAAATGTGAAATTCAAGACAATACA GTGCGGCACAGAGGACGGATAAGTGCTGAAACCTCTGTACCTGTATGTAT GATAATATAGGATCTTCATACCGTGGAGTCGTTTGGAACAAATCGTGTTC CATCAAAATGCGTGTTCTTCACAAACCCCAGTAACCGATGCAACTTATAG GTTCTACAATTACAGCTACGAGATGCAGCAATAGTTCGGTCATGGGACCT AAGAGTAGCTACATATCTTTTTTGTATTATGGTCGTATTGCGGGACTGGT ACTTGTTTCTTCAAACTCGATACTTCGCTTGTGCTCGAGACCCAAACGCG AGTTGCAGCAATCAGAAGGTCTAGGTGCGTTCTGTATTTTCTCCAAACAC AAAGGTCTAGATGCGTTCAGATTTTTCTTTAAATTTTTCGAGTGTATGCT AGAAGACAGGGAAACATGGAATTGTAATACAGATACCAAGGTAGCAAAAT AATCGACATACATACGGTAACATAACAAACACGCCACCCCCTGGGTATCG CACGGATCACGCATTTCCCTTGCAGTCGAGTTGCTTTCACTATTTCTAGC AAGTGTGACTTCGTTCATGTACTAACGCAATGTTCGGCAAACTACCCCCT CTTTCTCTCTTTCTCCCTCCCCCCTCTCCCTCCCTCCCATTCTCCGACAG GCGCGGCGATGGCATCACCCAGAGGGACCTCCTCGTCGCTTCCTCTCGCA CCTCCTCACCTTTCCTCTCACGCTGGCAACCGGTCTGCACGAAGCCGGGT TGGGGTTTCCACTATGTAGTGAGGCATCCTCTCGAGCTGAATCAGACCAG GAGAGACGCTCAACGAAAACGGCGGGCAGCTACTCCATCACAGTTGCGTG CATCGGGGCGCGCGCGGAGAGCTCTCTTCCGCCGGCGTTGTGGCGCGAGC TCCTCTTCGCCCTCCCTCTCGTTCATTTTGTAGATTTACATCACATCGGA CCGGAAGTTTCCCATCCCTCTGGACTGATGCCCCCCACGGATCGCGGCGC GAGGCTACCTTCGCCCGGCAATCCCTTGACCAGCGTTAACCTGGACGGCA GGACCGTTAATATTACTTGTACGCGAGCGATCCTGGGACAGGAGGCAGGT ATGTGCAGTGGCGTTAGAGACACGTCTGGGAGAGGGGATGGGTCAGTGGT AGCGGCAGTGGCCGAGCGTGCCGTAGCAAAAGCAGACGCAATCGTTTTCT TCAACCCGGGATTTGGACACCCGCATCTTCGTGAAGGGTGGGAAGGGGCT CTGAAACGCCTCATTTGCACGGGAAAACCGCTGATTGTCACTTGCCACAG CCTCAAAGACTTGGACAGGGACGCGCGGCAGGTTCACGCGGTTGCAGAGC GTTCCTGCGTCGATTGGGTTTCAGGTAGAGGCTCTCGTTTGTTCCCGAGA GAAAACCCGTTTCGTAGTTTAATCACGGCAGAGGATCCGCTGTCGAGGAG TCACGGTGCCCCGGAGATCGTTTCGAGCAATTGGGGCATGTTTGTTGTCC CAAGTGGAACGAAGTCTTCCCAGTGACTTTAGCATGGTGTAATCTCACGG TGGAGGTATTTGTACAAAAATCACTTGAAGGTACACTTTGTGGGCTCCCA GGTGTTCCCGAGAGAAAACGCCTTTCGTAGTTTGATCACGGCAGAGGATC CGCGATCGAGGAGTCGCGGTGCTGCCCCGGAGACCGTTTCGAGCAATTGG GGCATGTTTGTTGTTCCACGTGGAACGAAGCCTTCTCAGCGACTCAAGCC TGGTTTGATCTCACGGTCGGGATATTCGTCAGAAAATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1139:228018..230305+

>mRNA_F-serratus_M_contig1139.1208.1 ID=mRNA_F-serratus_M_contig1139.1208.1|Name=mRNA_F-serratus_M_contig1139.1208.1|organism=Fucus serratus male|type=CDS|length=2250bp|location=Sequence derived from alignment at F-serratus_M_contig1139:228018..230305+ (Fucus serratus male)
ATGGTCATTCAGAAAGTACTCTCGCATATTCGACGGATCCGAGACTCTGG
GAGTAATTATTTGCGGTGCCATGCATCATATTCGACAGTGAAAAGGCAGA
TCGAAGTGGAAAGGGCGCGATCACAGCAGGAGGAGAACAAGCGATGGGCC
CAGGAACCAGGAGCCCGCGACGTGCTTGCTCAGCCGCCGTTCGACGGGAT
CGCGGTAGACACACCTTCCATGCTGGATTCCCTTGAGAACTATCTGAAGA
TGGTCATTCAGAAAGTACTCTCGCATATTCGACGGATCCGAGACTCTGGG
AGTAATTATTTGCGGTGCCATGCATCATATTCGACAGTGAAAAGGCAGAT
CGAAGTGGAAAGGGCGCGATCACAGCAGGAGGAGAACAAGCGATGGGCCC
AGGAACCAGGAGCCCGCGACGTGCTTGCTCAGCCGCCGTTCGACGGGATC
GCGGTAGACACACCTTCCATGCTGGATTCCCTTGAGAACTATCTGAAGGC
GCGGCGATGGCATCACCCAGAGGGACCTCCTCGTCGCTTCCTCTCGCACC
TCCTCACCTTTCCTCTCACGCTGGCAACCGGTCTGCACGAAGCCGGGTTG
GGGTTTCCACTATGTAGTGAGGCATCCTCTCGAGCTGAATCAGACCAGGA
GAGACGCTCAACGAAAACGGCGGGCAGCTACTCCATCACAGTTGCGTGCA
TCGGGGCGCGCGCGGAGAGCTCTCTTCCGCCGGCGTTGTGGCGCGAGCTC
CTCTTCGCCCTCCCTCTCGTTCATTTTGTAGATTTACATCACATCGGACC
GGAAGTTTCCCATCCCTCTGGACTGATGCCCCCCACGGATCGCGGCGCGA
GGCTACCTTCGCCCGGCAATCCCTTGACCAGCGTTAACCTGGACGGCAGG
ACCGTTAATATTACTTGTACGCGAGCGATCCTGGGACAGGAGGCAGGTAT
GTGCAGTGGCGTTAGAGACACGTCTGGGAGAGGGGATGGGTCAGTGGTAG
CGGCAGTGGCCGAGCGTGCCGTAGCAAAAGCAGACGCAATCGTTTTCTTC
AACCCGGGATTTGGACACCCGCATCTTCGTGAAGGGTGGGAAGGGGCTCT
GAAACGCCTCATTTGCACGGGAAAACCGCTGATTGTCACTTGCCACAGCC
TCAAAGACTTGGACAGGGACGCGCGGCAGGTTCACGCGGTTGCAGAGCGT
TCCTGCGTCGATTGGGTTTCAGGTAGAGGCTCTCGTTTGTTCCCGAGAGA
AAACCCGTTTCGTAGTTTAATCACGGCAGAGGATCCGCTGTCGAGGAGTC
ACGGTGCCCCGGAGATCGTTTCGAGCAATTGGGGCATGTTTGTTGTCCCA
AGTGGAACGAAGTCTTCCCAGTGAGCGCGGCGATGGCATCACCCAGAGGG
ACCTCCTCGTCGCTTCCTCTCGCACCTCCTCACCTTTCCTCTCACGCTGG
CAACCGGTCTGCACGAAGCCGGGTTGGGGTTTCCACTATGTAGTGAGGCA
TCCTCTCGAGCTGAATCAGACCAGGAGAGACGCTCAACGAAAACGGCGGG
CAGCTACTCCATCACAGTTGCGTGCATCGGGGCGCGCGCGGAGAGCTCTC
TTCCGCCGGCGTTGTGGCGCGAGCTCCTCTTCGCCCTCCCTCTCGTTCAT
TTTGTAGATTTACATCACATCGGACCGGAAGTTTCCCATCCCTCTGGACT
GATGCCCCCCACGGATCGCGGCGCGAGGCTACCTTCGCCCGGCAATCCCT
TGACCAGCGTTAACCTGGACGGCAGGACCGTTAATATTACTTGTACGCGA
GCGATCCTGGGACAGGAGGCAGGTATGTGCAGTGGCGTTAGAGACACGTC
TGGGAGAGGGGATGGGTCAGTGGTAGCGGCAGTGGCCGAGCGTGCCGTAG
CAAAAGCAGACGCAATCGTTTTCTTCAACCCGGGATTTGGACACCCGCAT
CTTCGTGAAGGGTGGGAAGGGGCTCTGAAACGCCTCATTTGCACGGGAAA
ACCGCTGATTGTCACTTGCCACAGCCTCAAAGACTTGGACAGGGACGCGC
GGCAGGTTCACGCGGTTGCAGAGCGTTCCTGCGTCGATTGGGTTTCAGGT
AGAGGCTCTCGTTTGTTCCCGAGAGAAAACCCGTTTCGTAGTTTAATCAC
GGCAGAGGATCCGCTGTCGAGGAGTCACGGTGCCCCGGAGATCGTTTCGA
GCAATTGGGGCATGTTTGTTGTCCCAAGTGGAACGAAGTCTTCCCAGTGA
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