mRNA_F-serratus_M_contig1139.1208.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: D8LNU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNU1_ECTSI) HSP 1 Score: 277 bits (708), Expect = 7.140e-85 Identity = 172/378 (45.50%), Postives = 217/378 (57.41%), Query Frame = 2
Query: 236 SYSTVKRQIEVERARSQQEENKRWAQEPGARDVLAQPPFDGIAVD------TPSMLDSLENYLKARRWHHPEGPPRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRG-ARLPSPGN--PLTS--VNLDGRTVNITCTRAILGQEAGMC-----------SGVRDTSGRG-----DGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCV----------DWVSGRGSRLFPRENPFRSLITAEDPLSRSHGAPEIVSSNWGMFVV 1258
+YST +E+ AR Q EENK WA+ PGAR VL QPPF+G D + ML+SLE YL+ARRW + E P RRFLSHLLT+PLTLA GL EA + + SD R + V C+GARAES++PPA WRE LFALP V + LH IGPE+ P G++ G A G P+++ +++ RT +I TRA++G AG C +G SGRG G+ AE AV ADA V FNPG GHPHLR+GW+GALKRL+ TGKP++V+CHS KDLDRD R + C + RG+ L +ENPFRSL+ +EDPLS G ++V NWGM VV
Sbjct: 29 AYST----LELPEARKQGEENKAWAKTPGARQVLDQPPFEGEDGDIGAARASACMLESLEGYLQARRWPYREEPARRFLSHLLTYPLTLAAGLREARI-----KQQPEYTNSDGRRNK--------LAVVCLGARAESTMPPAYWREALFALPDVSRLSLHLIGPELGLPPGVVAAARPGTAACDGAGTIGPISTAVISVGARTADIAWTRAMVGSSAGGCVTGAEQKPEAAAGSAVGSGRGAATEPGGAGAVEAAEEAVEAADAFVLFNPGLGHPHLRQGWDGALKRLLATGKPIVVSCHSPKDLDRDTRLLREAGAEPCCPPSAANASAGEGNGNRGNGLGAKENPFRSLMASEDPLSVP-GDEDLVWCNWGMMVV 388
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A835YLS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS8_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.760e-26 Identity = 88/263 (33.46%), Postives = 121/263 (46.01%), Query Frame = 2
Query: 305 WAQEPGARDVLAQPPFDGIAVDTPSMLDSLENYLKARRWHH---PEGPPRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALP-LVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRD 1081
WA++PG L PPFD A P L S E YL +R W + + R +SHLLT+PLTLA L S + RS AG + V CIGARAE++LPP LW E LF+ L+ L IGPE+ P + P + P ++ GR++ + R + A + D+ R +GS+ DA V F+PG GH HL GW+ ++ + P+I+T HS D RD
Sbjct: 18 WARQPGIVKALQPPPFDAAA---PPDLSSTEAYLASRFWTNILPSDAAAMRIISHLLTYPLTLAAAL-----------------ASVENTRSFSRAG---LHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRAVKPASSGDTA------PCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSI---------HTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRD 242
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A7S2S4T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4T4_9STRA) HSP 1 Score: 103 bits (258), Expect = 3.860e-21 Identity = 90/283 (31.80%), Postives = 121/283 (42.76%), Query Frame = 2
Query: 269 ERARSQQEENKRWAQEPGARDVLAQPPFDGIAVDTPSMLD-----SLENYLKARRWH-----HPEGPPRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGK--PLIVTCHSLKDLDRD 1081
E +R Q E+ WA+ P R+ L PP TP + D L+ YL+ R W P G RR LSH+L++PL+LA G+H+ GL A D+ R + V C GAR E+ LPP W ELL A P + V LH +GP+V G +R PG+ T+ T+ + ++ L V D A + NPG GHP LR+GW +L RL PL+VT H D +RD
Sbjct: 47 EESRRQLLEDTAWAKSPAGREALRPPPPXATPA-TPRLADLIQAGDLDGYLRYRGWPPDAVASPAG--RRVLSHVLSYPLSLARGIHKLGL-----------ASGDEGR----------LRVLCAGARGEAGLPPQWWMELLHACPALSHVTLHFVGPQVQE--GPPRVLERPTSAQGPGHHRTTP-----TLTLASSQTTL-------EAVDD-------------ALLHPPPTTLVWMSNPGLGHPSLRKGWAASLTRLAQAEPRLPLLVTSHHALDQERD 278
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: K8YPB9_NANGC (Mrna processing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPB9_NANGC) HSP 1 Score: 92.4 bits (228), Expect = 8.060e-17 Identity = 101/347 (29.11%), Postives = 133/347 (38.33%), Query Frame = 2
Query: 305 WAQEPGARDVLAQPPFD------GIAVDTPSMLDSLENYLKARRWHHPE------GPPRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSG--------------------------LMPPTDRGARL-PSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCVDWVSGRGSR-----LFPRENPFRSLITAEDPLSRSH 1213
W +P L QPP G + S +LE Y++ R+W P R LSHLL++PLTLA L S SD + G VA IGARAE++LP A W+E+L P + LH +GPEV P+ L P RL PS P +S + G T + L D + ++ + A A V FNPG GHP L + W+ L+ L P++ T HS +D DRD + AE D SG G + P NPF S DPL+ H
Sbjct: 22 WLSKP-TNSRLIQPPAPSAFHAAGEGPSSTSPPPTLEEYVRRRQWAGKNTETLLASPGLRVLSHLLSYPLTLAHYLP-------------SLHGSDTSSAKAGSPGEV-CHVAIIGARAEATLPDAWWQEVLCLQPGLFC--LHMVGPEVYDPATRAGRESVRLDPQRQLWMHRRQGMYHVLAPDLVSSFRLSPSSSPPASSASSPGVAATPAPTASSL-----------------DPVAPSQASDASPAAVSAAVLFNPGLGHPALAKAWKPTLQCLQAAKVPILWTAHSAEDRDRDVAWLSGGAE----DKESGFGDLRVEWLVAPGPNPFASRKLVVDPLNAQH 330
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A4D9CVF1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF1_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.380e-14 Identity = 103/349 (29.51%), Postives = 131/349 (37.54%), Query Frame = 2
Query: 305 WAQEPGARDVLAQPPFD------GIAVDTPSMLDSLENYLKARRWHHPE------GPPRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSG--------------------------LMPPTDRGARL-PSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERS---C----VDWVSGRGSRLFPRENPFRSLITAEDPLSRSH 1213
W +P L QPP G + S +LE Y++ R+W P R LSHLL++PLTLA L S SD + G S VA IGARAE++LP A W+E+L P + LH +GPEV P+ L P RL PSP P S + G V T S A A V FNPG GHP L E W+ L+ L P++ T HS +D DRD + AE + C V+W+ + P NPF S DPL+ H
Sbjct: 835 WLSKP-TNSRLIQPPAPSAFHDAGEGPSSTSPPPTLEEYVRRRQWAGKSTETLLASPGLRVLSHLLSYPLTLAHYLP-------------SLYGSDTASAKVGSPGGVSH-VAIIGARAEATLPDAWWQEVLCMQPGLFC--LHMVGPEVYDPATRAGRESVRLDPQRQLWMHRRQGLYHVLAPDLVSSFRLSPSPSPPALSASSPG--VAATXXXXXXXXXXXXXXXXXXXS---------------PAALSAAVLFNPGLGHPALAEAWKPTLQCLQAAKVPVLWTAHSAEDRDRDVACLSGGAEDNESGCGDMRVEWL------VAPGPNPFASRKLVVDPLNAQH 1143
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A1X2H5S1_SYNRA (zf-Mss51 domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H5S1_SYNRA) HSP 1 Score: 80.9 bits (198), Expect = 1.070e-12 Identity = 76/283 (26.86%), Postives = 117/283 (41.34%), Query Frame = 2
Query: 446 RFLSHLLTFPLTLATGLHEA---GLGFPLCSEASSRAES---------DQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCVDWVSGRGSRLFPRENPFRSLITAEDPLSRSHGAPEIVSSNWGMFVV 1258
R +S LLT+P+T+A+ LHE+ LG + E + + + S +I + +GARAE++LPP +W +L + P F +H IGPE P G P T TSVN R + + + +T D D F+PG GHP RE W+ A+++++ T P+ +T D+ D V + DWV + P EN FRSL + L E + +NWG++ +
Sbjct: 171 RHISKLLTYPITVASVLHESCPYQLGKEITPEGMRSISALRTVLYPRNEVTKDGVSLVRSETINLYVVGARAEATLPPHIWLQLAYLFPHTPF-HVHMIGPEAL-PPGKEPYT-------------TSVN----------ERLVFTYDRALYQDFHETVDSFD------------PYTDLFFLFSPGIGHPAAREDWKQAIQKVLETKCPIFLTGFDEADVQTDVAAVEEDYQGE-FDWV------MKPTENRFRSLKRDVNLLDLR----ETIFANWGIWAI 405
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A077W6J4_9FUNG (zf-Mss51 domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077W6J4_9FUNG) HSP 1 Score: 80.1 bits (196), Expect = 2.250e-12 Identity = 71/283 (25.09%), Postives = 119/283 (42.05%), Query Frame = 2
Query: 446 RFLSHLLTFPLTLATGLHEA---GLGFPLCSEASSRAES---------DQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCVDWVSGRGSRLFPRENPFRSLITAEDPLSRSHGAPEIVSSNWGMFVV 1258
R +S LLT+P+T+A+ LH++ LG + SE + + + S +I V +GARAE+SLPP +W +L + P F +H +GP+ PS P T +++N R + + M + E D F+PG GHP REGW+ ++++ + T P+ +T + D++ D V + DWV + P EN FRSL + + + + +NWG++ +
Sbjct: 206 RHVSKLLTYPITIASVLHQSCPYKLGKEITSEGMRSISALRTILYPRNEVAKDGVSLVRSETINVYIVGARAEASLPPYIWLQLAYLFPHTPF-HIHMVGPDALSPSQ---------------QPYT------KSLN---ERLMFTYDNSMYHDYHEKI------------EEFDPYTDLFFLFSPGIGHPSAREGWKQSIQKALETKCPIFITGYDQADVNADVAAVEEDYQGE-FDWV------MRPTENEFRSLKRDVNLMD----VRQTIFANWGLWGI 440
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A2P4XZM3_9STRA (Mss51 like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XZM3_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.490e-11 Identity = 63/224 (28.12%), Postives = 90/224 (40.18%), Query Frame = 2
Query: 611 IGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCVDWVSGRGSRLFPRENPFRSLITAEDPLSRSHGAPEIVSSNWGMFVVPSGTKSSQ 1282
IGARAE+ +P LW EL F P F G +L P+ S T I + M +G+ + E + DA V +NPG GHPHLRE WE L+ ++ +GKP+++T SL+D RD + + S V R ++N FRSL DP + + +N + VV GT +
Sbjct: 192 IGARAEAMMPRYLWDELSFFHPGRQF----------------------GIKLVGDHVPVMSARKKTPTTRENENEFI---QLEMINGLYHK-----------IEETKLGTPDAFVLYNPGVGHPHLRESWEPTLQAVLASGKPVLITSFSLEDQQRDITALQELVANSPVLKQHELRFRCRAKQNSFRSLKYQLDPSN----VDTPIQTNNRVMVVQLGTDDKE 375
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A8K1C4M7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4M7_PYTOL) HSP 1 Score: 75.1 bits (183), Expect = 5.550e-11 Identity = 84/304 (27.63%), Postives = 121/304 (39.80%), Query Frame = 2
Query: 317 PGARDVLAQ---PPFDGIAVDTPSMLDSLENYLKARRWHHPEGP-------PRRFLSHLLTFPLTLATGLHEAGLGFPLCSEASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHPSGLMPPTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREGWEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSCVDWVSGRGSRLFPRENPFRSLITAEDP 1198
P AR VL + P ++D S + + EN+++ H + P RR +S TFP+TL++ L P +A+ T S +T+ +GARAE+ +P +W EL P F + +G V P R R ++D R TCT G V T E + DA V FNPG GHPHLRE W + ++ +GKP ++T S +D RD + + V ++ G P N FRSL DP
Sbjct: 105 PAARKVLTEVVTPAQRETSID--SAITTWENFVRL----HTKDPVWLGDRCARRLVSAAYTFPMTLSSLL-------PHLLDAT-------------TTDSKDLTLHVVGARAEAMMPKHIWDELARQRPDYRF-KMWLVGDHV-------PKLPRKKRQ-------NCDDVDSRLTIDTCT--------GFYHDVAST-------------ELSSTLPDAYVLFNPGVGHPHLRELWRPTMDLVLNSGKPALLTSFSERDQQRDLNALRELYAHHSVRFLVG------PGRNTFRSLQYQLDP 340
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Match: A0A067MQR0_9AGAM (zf-Mss51 domain-containing protein n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067MQR0_9AGAM) HSP 1 Score: 74.3 bits (181), Expect = 1.790e-10 Identity = 89/300 (29.67%), Postives = 125/300 (41.67%), Query Frame = 2
Query: 443 RRFLSHLLTFPLTLATGLHEAGLGFPLCSE-----------ASSRAESDQERRSTKTAGSYSITVACIGARAESSLPPALWRELLFALPLVHFVDLHHIGPEVSHP--SGLMP-PTDRGARLPSPGNPLTSVNLDGRTVNITCTRAILGQEAGMCSGVRDTSGRGDGSVVAAVAERAVAKADAIVFFNPGFGHPHLREG----------WEGALKRLICTGKPLIVTCHSLKDLDRDARQVHAVAERSC-VDWVSGRGSRLFPRENPFRSL---ITAEDPLSRSHGAPEIVSSNWGMFVV 1258
RR S LLT+P+T+A+ LHE GF + ++ A A +T + + +GARAESSLPP +W +L P F L+ IGP+V+ P S P PT +G P P+++ RT + + + + TS R S V A DA F PGFG P W L L+ T P+ VT S D++RD R + V S DWV + P ENPF S + DP +V +NWG++ +
Sbjct: 191 RRHASKLLTYPITVASLLHENS-GFTIRNQRVTPEGLRSFAALRMALHQPPSVEVETEPRPPMRLFILGARAESSLPPHVWEQLSHLFPGASF-HLYMIGPQVTLPANSSAQPAPTAKGVYEPPTLKPVSN---QSRTRDEQIQFGVPSSTVAVSPTLTITSLRASYSEVHAHFGPHDPYTDAFFAFCPGFGFPSPTSPPDLQIAAPAEWGPVLPLLLETKCPVFVTGFSPTDVERDVRSLENVPGVSGEFDWV------VTPGENPFGSEKWEVADFDPRV-------MVKTNWGVWGI 472 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1139.1208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1139.1208.1 >prot_F-serratus_M_contig1139.1208.1 ID=prot_F-serratus_M_contig1139.1208.1|Name=mRNA_F-serratus_M_contig1139.1208.1|organism=Fucus serratus male|type=polypeptide|length=375bp MVIQKVLSHIRRIRDSGSNYLRCHASYSTVKRQIEVERARSQQEENKRWAback to top mRNA from alignment at F-serratus_M_contig1139:228018..230305+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1139.1208.1 ID=mRNA_F-serratus_M_contig1139.1208.1|Name=mRNA_F-serratus_M_contig1139.1208.1|organism=Fucus serratus male|type=mRNA|length=2288bp|location=Sequence derived from alignment at F-serratus_M_contig1139:228018..230305+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1139:228018..230305+ >mRNA_F-serratus_M_contig1139.1208.1 ID=mRNA_F-serratus_M_contig1139.1208.1|Name=mRNA_F-serratus_M_contig1139.1208.1|organism=Fucus serratus male|type=CDS|length=2250bp|location=Sequence derived from alignment at F-serratus_M_contig1139:228018..230305+ (Fucus serratus male)back to top |