mRNA_F-serratus_M_contig1139.1207.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1139.1207.1
Unique NamemRNA_F-serratus_M_contig1139.1207.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1139.1207.1 vs. uniprot
Match: A0A6H5KKD9_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKD9_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.060e-57
Identity = 90/114 (78.95%), Postives = 98/114 (85.96%), Query Frame = 2 
Query:  152 PSLREACTNAYDFEDPTCQGNSTLYWGTGNGTDLSCAHCVCPDGWTGLDCGRCQDVSVCPTKAVGGKTVAATNCSSETLLLTEEEASSALGKVFSCSCGGGEDVWTDFLCEQQP 493
            PSLR+ACTNAYD+ DPTC GNSTLYWGTGN TDLSCAHCVC DGW G+DCGRC DVSVCP+  V G+  AATNCS+ TLLLTEEEA S  GK+FSCSCGGGED WTDFLC+QQP
Sbjct:   36 PSLRQACTNAYDYGDPTCFGNSTLYWGTGNHTDLSCAHCVCEDGWAGVDCGRCLDVSVCPSSTVDGQVAAATNCSANTLLLTEEEARSEAGKIFSCSCGGGEDGWTDFLCDQQP 149
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BLAST of mRNA_F-serratus_M_contig1139.1207.1 vs. uniprot
Match: A0A6H5JIB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB0_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 7.310e-40
Identity = 73/123 (59.35%), Postives = 84/123 (68.29%), Query Frame = 2 
Query:  161 REACTNAYDFEDPTCQGNSTLYWGTGNGTDLSCAHCVCPDGWTGLDCGRCQDVSVCPTKAVGGK------------TVAATNCSSETLLLTEEEASSALGKVFSCSCGGGEDVWTDFLCEQQP 493
            R +  +AYDF DPT  GN TLYWGTG  + LS AH V  DGW G+DCGRC DVSVCP++ V G+             VAATNCS+ TLLLTEEEA S   K+ SCSCGGG+D WTDF+C QQP
Sbjct:  169 RRSLHSAYDFGDPTYLGNCTLYWGTGIRSGLSFAHYVRKDGWGGMDCGRCLDVSVCPSRTVNGQKRRIHPVVETVDAVAATNCSANTLLLTEEEARSEARKICSCSCGGGDDGWTDFMCRQQP 291
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BLAST of mRNA_F-serratus_M_contig1139.1207.1 vs. uniprot
Match: D8LNV5_ECTSI (ATP-binding cassette superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV5_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.170e-21
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 2 
Query:  251 LSCAHCVCPDGWTGLDCGRCQDVSVCPTKAVGGKTVAATNCSSETLLLTEEEASSALGKVFSCSCGGGEDVWTDFLCEQQP 493
            +SC+ C CP+GW G+DCGRC  VSVCP K + G  V+ATNCSS +L+ T EE+    GKV SCS GGG D +T  L E QP
Sbjct:    1 MSCSFCDCPEGWEGVDCGRCSSVSVCPDKTINGTLVSATNCSSSSLIPTAEESQQENGKVLSCSLGGGGDAFTAALRELQP 81
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BLAST of mRNA_F-serratus_M_contig1139.1207.1 vs. uniprot
Match: A0A150GKS9_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GKS9_GONPE)

HSP 1 Score: 84.7 bits (208), Expect = 8.690e-18
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 2 
Query:  194 DPTCQGNSTLYWGTGNGTDLSCAHCVCPDGWTGLDCGRCQDVSVCPTKAV-GGKTVAATNCSSETLLLTEEEASSALGKVFSCSCGGGEDVWTDFLCEQQP 493
            DP C     L    G     SCAHC+CP GW G+DC  C   S CP + +  G  + A  C+S +++ T EEA    GK  +C+CGG +DV T +LC++QP
Sbjct:   14 DPICTNGGYLNALPGTDKSDSCAHCICPSGWAGVDCSACTSASACPPQPMPDGSLLPAAECTSGSVVPTAEEA--LYGKTLACTCGG-DDVSTQYLCDKQP 111
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BLAST of mRNA_F-serratus_M_contig1139.1207.1 vs. uniprot
Match: A0A5J4Y1Y9_9CHLO (ATP-binding cassette superfamily n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y1Y9_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 1.460e-16
Identity = 49/119 (41.18%), Postives = 64/119 (53.78%), Query Frame = 2 
Query:  146 EEPS-LREACTNAYDFEDPTCQGNSTLYWGTGNGTDLSCAHCVCPDGWTGLDCGRCQDVSVCPTKAV-GGKTVAATNCSSETLLLTEEEASSALGKVFSCSCGG-GEDVWTDFLCEQQP 493
            E+P  L   C N+ D +DP C     L     N    +CA CVCPDGWTG+DC  C  V +CP K +  G       C+S++++ T  E   A GK FSC CGG   D  T++ C+QQP
Sbjct:   31 EDPDGLYRMCRNSIDNDDPRCYNGGYLR-AQNNTYQDNCAVCVCPDGWTGIDCSVCTTVDICPAKQLPDGTQQQPAACASDSMMPTTYEI--AHGKTFSCMCGGLAGDASTEWACKQQP 146
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BLAST of mRNA_F-serratus_M_contig1139.1207.1 vs. uniprot
Match: A0A835XJI5_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XJI5_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 1.280e-15
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 2 
Query:  194 DPTCQGNSTLYWGTGNGTDLSCAHCVCPDGWTGLDCGRCQDVSVCPTKAV-GGKTVAATNCSSETLLLTEEEASSALGKVFSCSCGGGEDVWTDFLCEQQP 493
            DP C     L   +      SC HC+CP+GW G+DC  CQ  S CP + +  G  + A  C+ +T++ T+EEA    GK  +CSCGG +DV T ++C +QP
Sbjct:   45 DPICTNGGYLNALSNTPLSDSCGHCICPEGWGGVDCSACQATSACPPQPMPDGSLLPAAACTHDTIIPTDEEA--LYGKTLACSCGG-DDVSTQYVCGKQP 142
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BLAST of mRNA_F-serratus_M_contig1139.1207.1 vs. uniprot
Match: A0A7R9U018_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9U018_9VIRI)

HSP 1 Score: 78.2 bits (191), Expect = 9.490e-14
Identity = 44/96 (45.83%), Postives = 50/96 (52.08%), Query Frame = 2 
Query:  170 CTNAYDFEDPTCQGNSTLYWGTGNGTDLSCAHCVCP--DGWTGLDCGRCQDVSVCPTKAVGGKTVAATNCSSETLLLTEEEASSALGKVFSCSCGG 451
            C NA     P C    TL     + +  +CA C CP   GW G DC  C D S CP    G    AATNC+S+TLL TEEE +S  GK  SC CGG
Sbjct:   42 CANAMKVGKPACLHGGTLVSTDSSSSSENCASCKCPAGGGWRGPDCSVCVDASACPESPDG---TAATNCTSDTLLPTEEELASEGGKRLSCVCGG 134
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BLAST of mRNA_F-serratus_M_contig1139.1207.1 vs. uniprot
Match: A0A6H5KT00_9PHAE (ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT00_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.240e-8
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 2 
Query:  350 KTVAATNCSSETLLLTEEEASSALGKVFSCSCGGGEDVWTDFLCEQQP 493
            K + ATNCSS +L+ T+EE+    GKVFSCSCGGG D +TD LC  QP
Sbjct:   24 KLLPATNCSSSSLIPTDEESQQENGKVFSCSCGGGGDAFTDALCGLQP 71
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1139.1207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KKD9_9PHAE1.060e-5778.95ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A6H5JIB0_9PHAE7.310e-4059.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNV5_ECTSI1.170e-2156.79ATP-binding cassette superfamily n=1 Tax=Ectocarpu... [more]
A0A150GKS9_GONPE8.690e-1841.58Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A5J4Y1Y9_9CHLO1.460e-1641.18ATP-binding cassette superfamily n=1 Tax=Trebouxia... [more]
A0A835XJI5_9CHLO1.280e-1540.59Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7R9U018_9VIRI9.490e-1445.83Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A6H5KT00_9PHAE5.240e-860.42ABC protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1139contigF-serratus_M_contig1139:225090..227823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue2.9e-49
Seed eggNOG ortholog2880.D8LNU0
KEGG koko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Exons3
Model size494
Cds size453
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1139.1207.1prot_F-serratus_M_contig1139.1207.1Fucus serratus malepolypeptideF-serratus_M_contig1139 225090..227783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.7255507-CDS-F-serratus_M_contig1139:225089..2252301622929039.7255507-CDS-F-serratus_M_contig1139:225089..225230Fucus serratus maleCDSF-serratus_M_contig1139 225090..225230 -
1690962678.158462-CDS-F-serratus_M_contig1139:225089..2252301690962678.158462-CDS-F-serratus_M_contig1139:225089..225230Fucus serratus maleCDSF-serratus_M_contig1139 225090..225230 -
1622929039.7419581-CDS-F-serratus_M_contig1139:225658..2258431622929039.7419581-CDS-F-serratus_M_contig1139:225658..225843Fucus serratus maleCDSF-serratus_M_contig1139 225659..225843 -
1690962678.1759126-CDS-F-serratus_M_contig1139:225658..2258431690962678.1759126-CDS-F-serratus_M_contig1139:225658..225843Fucus serratus maleCDSF-serratus_M_contig1139 225659..225843 -
1622929039.7541246-CDS-F-serratus_M_contig1139:227656..2277831622929039.7541246-CDS-F-serratus_M_contig1139:227656..227783Fucus serratus maleCDSF-serratus_M_contig1139 227657..227783 -
1690962678.183961-CDS-F-serratus_M_contig1139:227656..2277831690962678.183961-CDS-F-serratus_M_contig1139:227656..227783Fucus serratus maleCDSF-serratus_M_contig1139 227657..227783 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929039.7674778-UTR-F-serratus_M_contig1139:227783..2278231622929039.7674778-UTR-F-serratus_M_contig1139:227783..227823Fucus serratus maleUTRF-serratus_M_contig1139 227784..227823 -
1690962678.1990647-UTR-F-serratus_M_contig1139:227783..2278231690962678.1990647-UTR-F-serratus_M_contig1139:227783..227823Fucus serratus maleUTRF-serratus_M_contig1139 227784..227823 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1139.1207.1

>prot_F-serratus_M_contig1139.1207.1 ID=prot_F-serratus_M_contig1139.1207.1|Name=mRNA_F-serratus_M_contig1139.1207.1|organism=Fucus serratus male|type=polypeptide|length=151bp
MGVKRDRAARGYALVLRIIFLVYVVRGEQTLDWSREEPSLREACTNAYDF
EDPTCQGNSTLYWGTGNGTDLSCAHCVCPDGWTGLDCGRCQDVSVCPTKA
VGGKTVAATNCSSETLLLTEEEASSALGKVFSCSCGGGEDVWTDFLCEQQ
P
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mRNA from alignment at F-serratus_M_contig1139:225090..227823-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1139.1207.1 ID=mRNA_F-serratus_M_contig1139.1207.1|Name=mRNA_F-serratus_M_contig1139.1207.1|organism=Fucus serratus male|type=mRNA|length=2734bp|location=Sequence derived from alignment at F-serratus_M_contig1139:225090..227823- (Fucus serratus male)
GTCACCGTCAGCAGTTTACACAGAGTTTTGCACTTGAGACATGGGGGTGA
AACGAGACCGTGCGGCACGAGGCTACGCTCTCGTGCTGCGCATCATATTC
CTCGTGTACGTCGTGCGTGGAGAGCAAACGTTGGATTGGAGCCGGGAGGA
ACCATCCCTACGTGAAGGTATAATCTATAGTAAACGAAAAATAAAAACGT
TTGTAATCACGCGTCTGGTACAAGTTGTTTTCCTGTTTTACTGTTGTCTC
TTCAGCAGGGCTGTAAAATATTTGTATACTTATACGAGCACCGAAAATTT
CGGGAAATTTGAACACATCTAACGTTAAGCCCTCCCAAACGTTCACGTCT
TCCGAGGGAATCATTGGGAATCATTGTGTCGAAACGTTTTGTTGGGAATT
TCGTTGTTCGAACAAATGGAATTTGGGTTCTCCAAATGTCACTTGCCTAG
GGTCAACAGTATATATCGGAGAGACGCTCACCTCAATCGTAGCTGTATAC
ACTCACACTAATCTCCATGTTGTGTACGTACACCAAAACAGGGACAAGAC
CCACTCAGAGGGGAATCTACTTCGGGTACAGAACTACCGGTATCGGCGAA
CCGGTTGATGATTATTGAATACTTGACGTACAGCTGTAGGTAGTTTAAAT
ACTGATGTGTGTCCGCGTACAGTACTACTGTATCTGCTTGTTGTAATGTG
GCATCTACAACATTATTTGTGACTACCAGGTACTGTATACTGCTGTGTCT
CTATCTCTAGTATTGACCATACTGGTCTGACAAAGCAACTTTTGCCCCTA
ACATATACGTAGCCAAAGAGAGTTGTAGTTACAGTACGGTAGTCGTTCAC
TTGCTCGGTTCCTTGTCCCGGTGTGAATGGTCACGTCAGGTAGATCCCAG
AGGAGTGTCTGGCAGCATTGGATCGGGCAGTATCTGCTGGCTTTCGACGG
TCCATAACTCTCCAGCTCCCTCTTGTAGCTGTACATAAGGATGTAGTAAG
GATGTAGTCTAATGGGCACTTGGCGGTTGTTTGTTGAAAGAAAATCAGAA
CAGCACCTAGATTGCAAATCGAAATAGCGTCTACGAACTAATGTAGAAAG
GAAAGATCTCAAGAAGCCGATTCCCCCGCACTTGGTCAAACGGCACCTTA
GGAGTACAAGTATTAATACGTACAGCTTGCATGTCGTGGATGCTGGAATG
CCATTTGGATGCGAGACGTATGGAGCGGGCCTGGGTAATCGCATTACCGA
TCGAATACGATGCCGATAAAATGGCACATGACTGGATGGAATTCAAACCC
CACCGGAACCCCGCGCCTACATACGTTATACTGATTATATGTAAATGCAT
TGACAGGACTCAAAGCATTAAGAGTATAGTTCAACATGGCGAGGTTATCA
ATCCTGCTCGTGGTCAGCCGAACAGGGAAACATGATTTTTCCCTGTCCCG
TTCGCAACTGAGAACTTGGCGTCGCGAGACAGGTTTGGCCGTCCCATTTC
GCGCCAGCCTGCTCATTTTTCACACTCGGGCTGATTCTGGTGTGCCTTGT
TGCGGCGGCGGAAACGTTTTATCAAAATGTGATGATTCCACTACTTCACT
TTTTTGTATTTCATTTCGTAGCCGAGACACGCTATTAATAACCGCGCCAG
ACCAGCGACTTCTTTAGAAACGATGCTCCACGTGGAACGTTGTCAGGTCC
TCTCGACCCTCTGTATATGATCAAGCCAGGGTGGTTGGTTACTGTGTGTA
GTAGTTCCCATTCGGAGCGTACAGGTCACCCCCGGGGCGCGTTTCTGAAA
CCTCGGGTGGCGAATCTATCGAGAACTGTATATATTTTAAGAGCGTGCAA
AGATGTGTCGTCGACCTTTAAAGTTGACCGGACTGTCTTGAAGACCAAAC
ACCGCAACTTGCATTTGAACCACCCACCCCACCATACGGTCGATTCGCAA
TCGTCATCATCGCCACCGTCGTTACAACAGCTTGCACAAACGCGTACGAC
TTCGAAGACCCCACCTGCCAGGGGAACTCCACGCTGTACTGGGGAACGGG
CAACGGAACGGACCTCAGCTGCGCGCACTGTGTTTGCCCGGACGGATGGA
CAGGACTCGACTGCGGCCGCTGTCAGGACGTCTCCGTTTGCCCGACGAAG
GCGGTGGGGGGCAAGGTGAGGCGTGTGAGAAGGTAGGCGAAGCAGCTTTT
CGCGGGGCAGAAAGAGGCCGACTTTGATGCTGGCCCCCTGTCTTCCGTTT
TCGGGCTGTTCTAAGGCCATGCCACCCCCCCTCGAAAAAACAAACAAACA
AATACGCAAAAAAACGAAGAAAACAAAAGAATAGCAAAAGCCGCAAAAAC
ACTATTACGTAATAGTAATATTATAGTACGAGACTCATCCTCATCCATTT
TGTTGCGTTCAATTTGTGCGATTGTCTTATTAATATTCATAGTTGTAGGC
GGGAAATGATCTGTAAAGTATTATTAATAGTCTAATGGTACTACAGTTGT
ACTGGTATGATATTAATATCAATATTAGTAGCGCTAATCTTGCTTCAGCA
AACGCCAGCAAACGTCCCCCAACCCCCTTCCGCCGTGGAGCAGACAGTGG
CGGCAACAAATTGTAGCTCGGAAACCCTTTTGCTCACCGAAGAGGAAGCA
AGCTCCGCACTGGGAAAAGTGTTCTCGTGCTCTTGCGGGGGCGGTGAGGA
CGTCTGGACAGACTTCCTGTGCGAACAACAGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1139:225090..227823-

>mRNA_F-serratus_M_contig1139.1207.1 ID=mRNA_F-serratus_M_contig1139.1207.1|Name=mRNA_F-serratus_M_contig1139.1207.1|organism=Fucus serratus male|type=CDS|length=906bp|location=Sequence derived from alignment at F-serratus_M_contig1139:225090..227823- (Fucus serratus male)
ATGGGGGTGAAACGAGACCGTGCGGCACGAGGCTACGCTCTCGTGCTGCG
CATCATATTCCTCGTGTACGTCGTGCGTGGAGAGCAAACGTTGGATTGGA
GCCGGGAGGAACCATCCCTACGTGAAGATGGGGGTGAAACGAGACCGTGC
GGCACGAGGCTACGCTCTCGTGCTGCGCATCATATTCCTCGTGTACGTCG
TGCGTGGAGAGCAAACGTTGGATTGGAGCCGGGAGGAACCATCCCTACGT
GAAGCTTGCACAAACGCGTACGACTTCGAAGACCCCACCTGCCAGGGGAA
CTCCACGCTGTACTGGGGAACGGGCAACGGAACGGACCTCAGCTGCGCGC
ACTGTGTTTGCCCGGACGGATGGACAGGACTCGACTGCGGCCGCTGTCAG
GACGTCTCCGTTTGCCCGACGAAGGCGGTGGGGGGCAAGCTTGCACAAAC
GCGTACGACTTCGAAGACCCCACCTGCCAGGGGAACTCCACGCTGTACTG
GGGAACGGGCAACGGAACGGACCTCAGCTGCGCGCACTGTGTTTGCCCGG
ACGGATGGACAGGACTCGACTGCGGCCGCTGTCAGGACGTCTCCGTTTGC
CCGACGAAGGCGGTGGGGGGCAAGACAGTGGCGGCAACAAATTGTAGCTC
GGAAACCCTTTTGCTCACCGAAGAGGAAGCAAGCTCCGCACTGGGAAAAG
TGTTCTCGTGCTCTTGCGGGGGCGGTGAGGACGTCTGGACAGACTTCCTG
TGCGAACAACAGCCGACAGTGGCGGCAACAAATTGTAGCTCGGAAACCCT
TTTGCTCACCGAAGAGGAAGCAAGCTCCGCACTGGGAAAAGTGTTCTCGT
GCTCTTGCGGGGGCGGTGAGGACGTCTGGACAGACTTCCTGTGCGAACAA
CAGCCG
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