mRNA_F-serratus_M_contig1.28.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1.28.1
Unique NamemRNA_F-serratus_M_contig1.28.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1contigF-serratus_M_contig1:862960..863603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size644
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1.28.1prot_F-serratus_M_contig1.28.1Fucus serratus malepolypeptideF-serratus_M_contig1 863094..863423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.5340383-UTR-F-serratus_M_contig1:862959..8630931622928772.5340383-UTR-F-serratus_M_contig1:862959..863093Fucus serratus maleUTRF-serratus_M_contig1 862960..863093 +
1690962560.9503474-UTR-F-serratus_M_contig1:862959..8630931690962560.9503474-UTR-F-serratus_M_contig1:862959..863093Fucus serratus maleUTRF-serratus_M_contig1 862960..863093 +
1622928772.5618446-UTR-F-serratus_M_contig1:863423..8636031622928772.5618446-UTR-F-serratus_M_contig1:863423..863603Fucus serratus maleUTRF-serratus_M_contig1 863424..863603 +
1690962561.0168927-UTR-F-serratus_M_contig1:863423..8636031690962561.0168927-UTR-F-serratus_M_contig1:863423..863603Fucus serratus maleUTRF-serratus_M_contig1 863424..863603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928772.549412-CDS-F-serratus_M_contig1:863093..8634231622928772.549412-CDS-F-serratus_M_contig1:863093..863423Fucus serratus maleCDSF-serratus_M_contig1 863094..863423 +
1690962560.9797454-CDS-F-serratus_M_contig1:863093..8634231690962560.9797454-CDS-F-serratus_M_contig1:863093..863423Fucus serratus maleCDSF-serratus_M_contig1 863094..863423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1.28.1

>prot_F-serratus_M_contig1.28.1 ID=prot_F-serratus_M_contig1.28.1|Name=mRNA_F-serratus_M_contig1.28.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MWEEKKHLPRKFAISVGLHFCGTGPIAPRLQKFRHRNFTFLYFHVVSVSH
KGWPKHPDCSAIWCRAPPPKTRNLQQRFVALITYYLHTTCHGTNEDSLSD
CFFFFLYEQ*
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mRNA from alignment at F-serratus_M_contig1:862960..863603+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1.28.1 ID=mRNA_F-serratus_M_contig1.28.1|Name=mRNA_F-serratus_M_contig1.28.1|organism=Fucus serratus male|type=mRNA|length=644bp|location=Sequence derived from alignment at F-serratus_M_contig1:862960..863603+ (Fucus serratus male)
GAGCTCTTCTTTGCCGATATTTGATAGGAGGGATGCTACAGTCCCGACCT
CCCAATCGTTCTTGGAAGGCGTGAATCATTTCTGCGGCAAACTAAACTTG
TCGAGCCACAGACAGAAATGAGCCTCATTTCTGTATGTGGGAAGAGAAAA
AACACCTCCCACGGAAATTCGCCATTTCTGTAGGGCTACATTTCTGCGGC
ACGGGGCCCATAGCGCCACGTTTACaAAAATTTCGCCACAGAAATTTCAC
ATTTCTGTATTTTCATGTCGTTTCTGTTTCCCATAAAGGTTGGCCTAAAC
ACCCCGACTGTAGCGCTATCTGGTGTCGAGCGCCGCCGCCAAAAACGCGG
AACTTACAACAACGCTTTGTTGCGTTAATTACCTATTATTTACATACTAC
GTGCCATGGTACGAACGAGGATTCACTATCCGACTGTTTTTTCTTCTTCC
TATATGAACAATAAAAGAGAAAAAGAAAAAAGCGTAATGAAATCGTGCCA
TGAAATCACCACCAGGGAGGTACATTACACTCGTATAGAGAGTACAGGCT
CAACAGTACCATAGAAAATATATATCGGCAACACCACAAATAATTACACG
AGAGTAGCCCTACTGGGACCATCCCAAAAAATCAATCCCATCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1:862960..863603+

>mRNA_F-serratus_M_contig1.28.1 ID=mRNA_F-serratus_M_contig1.28.1|Name=mRNA_F-serratus_M_contig1.28.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1:862960..863603+ (Fucus serratus male)
ATGTGGGAAGAGAAAAAACACCTCCCACGGAAATTCGCCATTTCTGTAGG
GCTACATTTCTGCGGCACGGGGCCCATAGCGCCACGTTTACaAAAATTTC
GCCACAGAAATTTCACATTTCTGTATTTTCATGTCGTTTCTGTTTCCCAT
AAAGGTTGGCCTAAACACCCCGACTGTAGCGCTATCTGGTGTCGAGCGCC
GCCGCCAAAAACGCGGAACTTACAACAACGCTTTGTTGCGTTAATTACCT
ATTATTTACATACTACGTGCCATGGTACGAACGAGGATTCACTATCCGAC
TGTTTTTTCTTCTTCCTATATGAACAATAAATGTGGGAAGAGAAAAAACA
CCTCCCACGGAAATTCGCCATTTCTGTAGGGCTACATTTCTGCGGCACGG
GGCCCATAGCGCCACGTTTACaAAAATTTCGCCACAGAAATTTCACATTT
CTGTATTTTCATGTCGTTTCTGTTTCCCATAAAGGTTGGCCTAAACACCC
CGACTGTAGCGCTATCTGGTGTCGAGCGCCGCCGCCAAAAACGCGGAACT
TACAACAACGCTTTGTTGCGTTAATTACCTATTATTTACATACTACGTGC
CATGGTACGAACGAGGATTCACTATCCGACTGTTTTTTCTTCTTCCTATA
TGAACAATAA
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