mRNA_F-serratus_M_contig1138.1193.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1138.1193.1 vs. uniprot
Match: D8LJN5_ECTSI (Ubiquitin conjugating enzyme n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN5_ECTSI) HSP 1 Score: 196 bits (499), Expect = 2.400e-62 Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 2
Query: 2 MTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTVLGPNGTPHEGRLYTLRIHCGENYPDQCPHVRFVSKLNMGCVDQ 286
MTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDG+DIFMTDWNGT+LGPNGT HEGRLYTLRIHCGE YPD+CP VRFVSKLNMGCVDQ
Sbjct: 2 MTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQ 96
BLAST of mRNA_F-serratus_M_contig1138.1193.1 vs. uniprot
Match: A0A835Z3M3_9STRA (Ubiquitin conjugating enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3M3_9STRA) HSP 1 Score: 144 bits (364), Expect = 8.200e-42 Identity = 62/93 (66.67%), Postives = 77/93 (82.80%), Query Frame = 2
Query: 8 TATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTVLGPNGTPHEGRLYTLRIHCGENYPDQCPHVRFVSKLNMGCVDQ 286
T +GE I++PRNFKLLEELEK EKG GD + SFGLV+ +DIFMTDWNG++LGP GT HE RLY +R+HCGE+YPD P VRF+ ++N+ CVDQ
Sbjct: 4 TPSGEQILIPRNFKLLEELEKSEKGHGDMNTSFGLVNQDDIFMTDWNGSILGPPGTIHETRLYEVRLHCGESYPDVAPEVRFLHRINLSCVDQ 96
BLAST of mRNA_F-serratus_M_contig1138.1193.1 vs. uniprot
Match: A0A024U9Q8_9STRA (UBC core domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U9Q8_9STRA) HSP 1 Score: 140 bits (354), Expect = 2.620e-40 Identity = 65/114 (57.02%), Postives = 80/114 (70.18%), Query Frame = 2
Query: 2 MTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTVLGPNGTPHEGRLYTLRIHCGENYPDQCPHVRFVSKLNMGCVDQEKRRGTTTGFRCWPSGTGI 343
M A EV++VPRNFKLLEELE EKG GD S+S+GL +DIF+T W GT+LGP GT H+GR+Y+L+IHCGENYP+ P V F S++NM CVDQ T R P G G+
Sbjct: 1 MMKAGAEVVIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTTHDGRIYSLKIHCGENYPNAPPEVLFTSRINMSCVDQ-------TNGRVNPRGLGV 107
BLAST of mRNA_F-serratus_M_contig1138.1193.1 vs. uniprot
Match: A0A6G0XR63_9STRA (UBC core domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XR63_9STRA) HSP 1 Score: 140 bits (352), Expect = 5.270e-40 Identity = 61/99 (61.62%), Postives = 76/99 (76.77%), Query Frame = 2
Query: 2 MTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTVLGPNGTPHEGRLYTLRIHCGENYPDQCPHVRFVSKLNMGCVDQEKRR 298
M A EV++VPRNFKLLEEL+ EKG GD S+S+GL +DIF+TDW GT+LGP GT H+GR+Y+L+IHCGENYP+ P V F S++NM CVDQ R
Sbjct: 1 MMKAGAEVVIVPRNFKLLEELDNAEKGHGDMSISYGLEQADDIFLTDWIGTILGPMGTSHDGRIYSLKIHCGENYPNAPPEVYFTSRINMTCVDQTNGR 99
BLAST of mRNA_F-serratus_M_contig1138.1193.1 vs. uniprot
Match: A0A7R9WWW4_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWW4_9STRA) HSP 1 Score: 139 bits (351), Expect = 7.950e-40 Identity = 65/115 (56.52%), Postives = 77/115 (66.96%), Query Frame = 2
Query: 8 TATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTVLGPNGTPHEGRLYTLRIHCGENYPDQCPHVRFVSKLNMGCVDQEK---RRGTTTGFRCWPSGTGI 343
T GE ++VPRNFKLLEELEK EKG+GD ++SFGLVD D F+++WNG +LGP GT H+GR Y LRIHC E YP P VRFVSK+NM CVD + R W GI
Sbjct: 5 TPGGETVIVPRNFKLLEELEKSEKGLGDMAISFGLVDSGDTFLSNWNGGILGPGGTQHDGRFYQLRIHCPEKYPAVPPEVRFVSKINMTCVDSRSGALKIDKVPAMRNWNRNMGI 119
BLAST of mRNA_F-serratus_M_contig1138.1193.1 vs. uniprot
Match: A0A7S2EGX9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EGX9_9STRA) HSP 1 Score: 140 bits (352), Expect = 1.260e-39 Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 2
Query: 8 TATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTVLGPNGTPHEGRLYTLRIHCGENYPDQCPHVRFVSKLNMGCVDQE 289
T +GE ++VPRNFKLLEELE EKG+GD ++S+GLVD D F+T+WNG +LGP GT H+ R Y LRIHCGE YP P VRFVS++NM CVDQ+
Sbjct: 32 TPSGETVIVPRNFKLLEELEHSEKGLGDMAISYGLVDSGDTFLTNWNGGILGPPGTQHDSRFYELRIHCGERYPAAPPDVRFVSRINMACVDQK 125
BLAST of mRNA_F-serratus_M_contig1138.1193.1 vs. uniprot
Match: A0A3R6ZTK8_9STRA (UBC core domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZTK8_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.820e-39 Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 2
Query: 11 ATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTVLGPNGTPHEGRLYTLRIHCGENYPDQCPHVRFVSKLNMGCVDQEKRRGTTTGF 316
A EV++VPRNFKLLEELE EKG GD S+S+GL +DIF+T W GT+LGP GT H+GR+Y+L+IHCGENYP+ P V F S++NM CVDQ R G
Sbjct: 3 AGAEVVIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTTHDGRIYSLKIHCGENYPNAPPEVLFTSRINMSCVDQTNGRVNPRGL 104
BLAST of mRNA_F-serratus_M_contig1138.1193.1 vs. uniprot
Match: A0A067D9H4_SAPPC (UBC core domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D9H4_SAPPC) HSP 1 Score: 138 bits (347), Expect = 3.120e-39 Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = 2
Query: 2 MTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTVLGPNGTPHEGRLYTLRIHCGENYPDQCPHVRFVSKLNMGCVDQEKRR 298
M + EV+++PRNFKLLEELE EKG GD S+S+GL +DIF+T W GT+LGP GT H+GR+Y+L+IHCGE+YP+Q P V F S++NM CVDQ R
Sbjct: 2 MAKSGAEVVIIPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTCHDGRIYSLKIHCGEHYPNQPPDVYFTSRINMSCVDQSNGR 100
BLAST of mRNA_F-serratus_M_contig1138.1193.1 vs. uniprot
Match: A0A7S1FND3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FND3_9STRA) HSP 1 Score: 137 bits (344), Expect = 8.380e-39 Identity = 64/116 (55.17%), Postives = 79/116 (68.10%), Query Frame = 2
Query: 2 MTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTVLGPNGTPHEGRLYTLRIHCGENYPDQCPHVRFVSKLNMGCVDQEKRRGTTT--GFRCWPSGTGI 343
M + E ++VPRNFKLLEELE+GEKG GD ++S+GLVD ED F+T WNG +LGP GT H+GR Y L+I C +NYP P VRFVS++NM CVDQ T F+ W GI
Sbjct: 1 MMRNSAETVIVPRNFKLLEELEQGEKGTGDMAISYGLVDPEDTFLTHWNGGILGPPGTHHDGRFYELKISCTDNYPTVPPEVRFVSRINMNCVDQTTGNVTNKFPTFKNWNRKMGI 116
BLAST of mRNA_F-serratus_M_contig1138.1193.1 vs. uniprot
Match: K3WUW2_GLOUD (UBC core domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WUW2_GLOUD) HSP 1 Score: 134 bits (337), Expect = 9.960e-38 Identity = 58/99 (58.59%), Postives = 75/99 (75.76%), Query Frame = 2
Query: 2 MTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTVLGPNGTPHEGRLYTLRIHCGENYPDQCPHVRFVSKLNMGCVDQEKRR 298
M+ EV++VPRNFKLLEELE EKG GD S+S+GL +DIF+T+W GT+LGP GT H+GR+Y+LRIHCG+ YP+ P V F S++NM CVD + R
Sbjct: 1 MSKPGAEVVIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLRIHCGDQYPNIPPEVAFTSRINMSCVDAQSGR 99 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1138.1193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1138.1193.1 >prot_F-serratus_M_contig1138.1193.1 ID=prot_F-serratus_M_contig1138.1193.1|Name=mRNA_F-serratus_M_contig1138.1193.1|organism=Fucus serratus male|type=polypeptide|length=140bp DDNCDRRGYYGPAQLQAVGGAREGRKGRGGSQRELWPGGRGRYLHDRLERback to top mRNA from alignment at F-serratus_M_contig1138:4062..13299- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1138.1193.1 ID=mRNA_F-serratus_M_contig1138.1193.1|Name=mRNA_F-serratus_M_contig1138.1193.1|organism=Fucus serratus male|type=mRNA|length=9238bp|location=Sequence derived from alignment at F-serratus_M_contig1138:4062..13299- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1138:4062..13299- >mRNA_F-serratus_M_contig1138.1193.1 ID=mRNA_F-serratus_M_contig1138.1193.1|Name=mRNA_F-serratus_M_contig1138.1193.1|organism=Fucus serratus male|type=CDS|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig1138:4062..13299- (Fucus serratus male)back to top |