mRNA_F-serratus_M_contig1134.1191.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1134.1191.1 vs. uniprot
Match: D7FWV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV3_ECTSI) HSP 1 Score: 470 bits (1210), Expect = 2.160e-137 Identity = 506/1301 (38.89%), Postives = 631/1301 (48.50%), Query Frame = 3
Query: 87 STHRSRIGHRLLIKMGVRVPLHCPMFDEAHKKYTYLKHYVDDLQQTLSAYAVQIARTTEAARGVGTDTSHLYGVRDVGFKPAIALRDAQEQCHSGYAGQLQQAFVQGVLSPIAEWQRELKKLEVWVASFNNIQVQHDHYRIKVDDLKVKAQQLEARAATRGDSRNAKAAAERLNRNALKLKQVTKDYEKARESSCQGMNKAWDNRLDMMNNIVSRIVHFQEAYLGEQLMTMLGVSRILEAA--GGKEWGDKTDIQAFVPRGAVRLYEGELFRKLIVVNERRWYRLVGSSFQVFDIKDK---DET-YYVVNEVPVVTHIVRGVQKVDETSFRVTLA----TGDIGLHLHATDAVDAEGWCKALATAAVWDQHSSAQEAAGAGGGPEAAGIAPGGENGVPVV---------------VVEPSGDGNXXXXXXXXGGSGXXXXXXXXXXXXXXXXXMPGGRRXXXXXXXXXXXGXXXXXGRMSMPTMGADPP--GFGVGMMPPGMTNVSSLRGP-------------------MGDPRLGMSMVGGPPMGGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMHSALPPGMTQSGPPVMMXXXXXXXXSAPVIDPIAPGSRPPQPSMMGGPGGPSMMGGRTPGWGQPNIFGGSRGSGGSWNTGNRSFAPRFG-PMGGAERQRAFRRSHSAGPG-GPEAMRQGRKSFESTSDEETASTRSAPPVSMSKVFGASAAVGAATAMAEXXXXXXXXXXXXXXXXXXXXXXX-TKPEEADGDSDYDVHAPSAXXXXXXXXXXXXXXXXXXGPPARTRQPMRAAPTPRKPRSAAPMFAVQAKNTMPQFTGRSASFDPVPGRSPTASSVTSVENKRPAPSKAVXXXXXXXXXXXPGLELPPTRAPVTETQTPGRTRIRSLQRPANAFRRM--FGTSSSSANTPTSLQNSAGAKGATPDDIKGERYTRVRVSPASGTGSAGSRSEQWPLKRSKS-STKDDSPVSVTEPTPEQTTEHRIPITTVVPMETKLESPHDDPRPDLPRDGIVASSPSRISAVAAAMM-AGSQDHGKGARPTSTSTVAAAVPEEDTSPRTMAESDSGET----AGADA-ADQAKVFRRLCVAKSSPSEAEGGDAGAGVGGQGAARRPEPTLTFDQLMAWDEIQELLDYGALKETEVKSIFKEALRNQGFDFAGTS----SKTADLWAP--PGADEGKTDALGRTISGSSDESGGGRPKNALTQKGFMNLVKLIEELQFEKELEQDNGVGLMPGPVTVV 3797
+T RSRIGHRLL+KMG+R CPMFDEAH+KYT+L HYV+++Q++LSAYA+Q+AR TEAARGVG D SH+Y VR+ GFKPA+A ++AQ+ HSGYAGQLQQA V+GV+ PI EW R+L+ +E V FN I+VQHDHYR+KV+DL KA+ LEARA TRGDSR+AK AAE+L RN KL +VT +++K S C M +AW++R MMN IV+RIVHFQE++ EQLM LGV+RIL AA GG WG I+ FVP+G VR YEGEL RK +V+ ER WYRLVGSS +V+D+K K D T YVV E+PV H V+GV KV +FRVT+ TG GL+L+A D VD +GW AL A+ WDQ +S+ +AAG IAPGGE GV + XX XXXXXXXXXX PGG GR + G P G M PP + S MGDPRL M+ MG XXXXXXXXXXXX + LP GM Q+GPP+++ G G G+ +RSF RFG G A RQ+ FRRS S G GP + Q ET STRSAPP FGA+A VG ATA AEXXXXXXXXXX TK ++ D +D A XXXXXXXXXXXXXXXXXX P + + K P R P XXXXXXXX L ++ T G T R+ +PA+ ++RM FG + SS +G ++ +++ + GT + + + +R+ S +T S SV TP R + P+ +E P + P G +P+ +A +AA A + G GA P + A DA A QAKVF+RLC SS SE E GDAG G A E TL+F QLM WDE+QELL++GALKE E+ ++++EA R Q + GT ++T D+W PGA A G GS GG ++ LT KGFM LVKLIEELQFEKELEQD GVGL+PGPV VV
Sbjct: 6 ATKRSRIGHRLLLKMGLRKVGFCPMFDEAHEKYTWLTHYVEEMQESLSAYALQLARMTEAARGVGEDASHIYLVRERGFKPAVAFKEAQDMGHSGYAGQLQQALVKGVVEPIGEWLRDLESIEGLVTDFNEIRVQHDHYRLKVEDLSQKARALEARATTRGDSRDAKQAAEKLKRNTKKLNEVTVEFDKKLSSCCNRMTRAWEDREKMMNGIVARIVHFQESFFAEQLMNSLGVARILSAAEGGGPRWGGTMGIEPFVPKGHVRHYEGELLRKHMVMKERMWYRLVGSSLEVYDMKPKEGRDNTPMYVVTELPVTVHEVKGVTKVSGVNFRVTVLGGGETGGGGLNLYAADEVDGKGWMDALTRASEWDQLASSSKAAG---------IAPGGEAGVAMAGAXXXXXXXXXXXXXXXXXKXXXXXXEKNPELANXXXXXXXXXXXXLLPPGLAGPGGPVGGMGGGVGIGGSFNSRTGRAGLGPSGVGMPFGNMGSHMNPPSFSGSSXXXXXXXXXXXXXXXXXXXXXXXQMGDPRLHMAAQ---QMG-----------------------------MSSNGRXXXXXXXXXXXXMPPHFDPPQMSGPPVNPSTGLPVGMRQNGPPIVLPAGMVPRGGGXXXXXXXXXXXXXXXXXXGPWGSTPQQXXXXXXXXXXXXXXXXLGT-------SRSFTSRFGMKQGAAGRQQGFRRSSSFGDWLGPSGVGQPLSPTMEVDSFETQSTRSAPP------FGATATVGDATAAAEXXXXXXXXXXAGGHVTGTEETKSSTKDKKGDEGADKATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAP-GVVTIQTIHTKKDAP--------------RPPXXXXXXXXXXXXXXXXXXXXXXXXXXXIPLSDLFKRGDDGGLSRYDTSGETPARARSKPASTWKRMMSFGGAGSSYRYDAGDAGVSGEGKSSAEEVSESDSALAAKAKNDGTQDSAALTTAEVSRRTDSGATAGSSGGSVVADTPSSAASTRATVGDPTPVIPAVEPPSESPA-----GGCEYITPAYFAAFSAATTPAPAGGPGSGANPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASNDAVAAQAKVFQRLC--DSSGSETETGDAGGGAAA--GAFGEESTLSFRQLMGWDEVQELLEFGALKEGELTTLWQEAARAQDAEL-GTGGDPRAQTTDIWGSGSPGAANAAAAAPGSQEGGS-----GGSTRDVLTVKGFMILVKLIEELQFEKELEQDKGVGLVPGPVCVV 1222
BLAST of mRNA_F-serratus_M_contig1134.1191.1 vs. uniprot
Match: A0A6H5KHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT2_9PHAE) HSP 1 Score: 415 bits (1066), Expect = 1.410e-114 Identity = 217/376 (57.71%), Postives = 276/376 (73.40%), Query Frame = 3
Query: 87 STHRSRIGHRLLIKMGVRVPLHCPMFDEAHKKYTYLKHYVDDLQQTLSAYAVQIARTTEAARGVGTDTSHLYGVRDVGFKPAIALRDAQEQCHSGYAGQLQQAFVQGVLSPIAEWQRELKKLEVWVASFNNIQVQHDHYRIKVDDLKVKAQQLEARAATRGDSRNAKAAAERLNRNALKLKQVTKDYEKARESSCQGMNKAWDNRLDMMNNIVSRIVHFQEAYLGEQLMTMLGVSRILEAA--GGKEWGDKTDIQAFVPRGAVRLYEGELFRKLIVVNERRWYRLVGSSFQVFDIKDK---DET-YYVVNEVPVVTHIVRGVQKVDETSFRVTLA----TGDIGLHLHATDAVDAEGWCKALATAAVWDQHSSAQE 1184
+T RSRIGHRLL+KMG+R CPMFDEAH+KYT+L HYV+++Q++LSAYA+Q+AR TEAARGVG D SH+Y +R+ GFKPA+A + AQ+ HSGYAGQLQQA V+GV+ PI EW R+L+ +E V FN I+VQHDHYR+KV+DL KA+ LEARA TRGDSR+AK AAE+L RN KL +VT +++K S C M +AWD+R MMN IV+RIVHFQE++ EQLM LGV+RIL AA G WG I+ FVP+G VR YEGEL RK +V+ ER WYRLVGSS + +D+K K D T YVV E+PV + V+GV K+ +FRVT+ TG GL+L+A D VD +GW AL A+ WDQ +S+ +
Sbjct: 6 ATKRSRIGHRLLLKMGLRKVGFCPMFDEAHEKYTWLTHYVEEMQESLSAYALQLARMTEAARGVGEDASHIYLIRERGFKPAVAFKQAQDMGHSGYAGQLQQALVKGVVEPIGEWLRDLESIEGLVTDFNEIRVQHDHYRLKVEDLSQKARALEARATTRGDSRDAKQAAEKLKRNTKKLNEVTVEFDKKLSSCCNRMTRAWDDREKMMNGIVARIVHFQESFFAEQLMNSLGVARILSAAEGSGPRWGGTMGIEPFVPKGHVRHYEGELLRKHMVMKERMWYRLVGSSLEAYDMKPKEGRDNTPMYVVTELPVAVYEVKGVTKISGVNFRVTVLGGGETGGGGLNLYAADEVDGKGWMDALTRASEWDQLASSNK 381 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1134.1191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1134.1191.1 >prot_F-serratus_M_contig1134.1191.1 ID=prot_F-serratus_M_contig1134.1191.1|Name=mRNA_F-serratus_M_contig1134.1191.1|organism=Fucus serratus male|type=polypeptide|length=1249bp MSDEAGGVVAPSTHRSRIGHRLLIKMGVRVPLHCPMFDEAHKKYTYLKHYback to top mRNA from alignment at F-serratus_M_contig1134:254497..280146- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1134.1191.1 ID=mRNA_F-serratus_M_contig1134.1191.1|Name=mRNA_F-serratus_M_contig1134.1191.1|organism=Fucus serratus male|type=mRNA|length=25650bp|location=Sequence derived from alignment at F-serratus_M_contig1134:254497..280146- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1134:254497..280146- >mRNA_F-serratus_M_contig1134.1191.1 ID=mRNA_F-serratus_M_contig1134.1191.1|Name=mRNA_F-serratus_M_contig1134.1191.1|organism=Fucus serratus male|type=CDS|length=7494bp|location=Sequence derived from alignment at F-serratus_M_contig1134:254497..280146- (Fucus serratus male)back to top |