prot_F-serratus_M_contig1134.1183.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig1134.1183.1
Unique Name	prot_F-serratus_M_contig1134.1183.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	89

Homology

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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: A0A6H5K1D5_9PHAE (MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.080e-19
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 0

Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFVNTSGGN----GIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 88
            SD+LTIH+N V++N  HGIIASKRCNN+SI+ N V   GGN    GI LHRS D +++ DN  YG+ D G+A+ E+S   I+GNI    K+G
Sbjct:   81 SDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIV--YGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYG 170

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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.400e-18
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 0

Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFVNTSGGN----GIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 88
            SD+LTIH+N V++N  HGIIASKRCNN+SI+ N V   GGN    GI LHRS D +++ DN  YG+ D G+A+ E+S   I+GNI    K+G
Sbjct:  381 SDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIV--YGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYG 470

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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.930e-17
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 0

Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 88
            SD+LTIH+N VWNN  HGIIASKRCN +SI+ N V   +SG  GI LHRS D+ ++  N V+ + D G+A+ E+    ++ N   N K+G
Sbjct:  263 SDFLTIHDNEVWNNGYHGIIASKRCNGVSIQGNEVYGGSSGSAGIFLHRSSDNGIVKGNYVHDNGDAGLAMLESFNADVSDNTFENNKYG 352

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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.360e-15
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 0

Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFVNTSGGN--GIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 88
            SDYLTI  N V+NN  HGIIASKRCNN+ I  N V   G    GI LHRS D + + DN +    D GIA+ E+    I GNI++  K+G
Sbjct:  679 SDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYG 768

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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.510e-15
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 0

Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 88
            SD+LT+H+N V++N  HGIIASKRCN +SI+ N V    S   GI L+RS DD+++  N V+ + D G+A+ E+    ++ NI  N K+G
Sbjct:   56 SDFLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYG 145

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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 7.170e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 0

Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 88
            SD+LTIH+N V+NN  HGIIASKRCN +SI+ N V        GI LHRS DD+++  N V+ + D G+A+ E+    ++ N   N K+G
Sbjct:  292 SDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYG 381

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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 8.430e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 0

Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 88
            SD+LTIH+N V+NN  HGIIASKRCN +SI+ N V        GI LHRS DD+++  N V+ + D G+A+ E+    ++ N   N K+G
Sbjct:  292 SDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYG 381

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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 8.450e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 0

Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 88
            SD+LTIH+N V+NN  HGIIASKRCN +SI+ N V        GI LHRS DD+++  N V+ + D G+A+ E+    ++ N   N K+G
Sbjct:  296 SDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYG 385

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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D8LHA3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA3_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.460e-14
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 0

Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 88
            SD+LTIH+N V+NN  HGIIASKRCN +SI+ N V        GI LHRS DD++   N V+ + D G+A+ E+    ++ N   N K+G
Sbjct:   88 SDFLTIHDNEVYNNGYHGIIASKRCNGVSIRGNEVYGGAETSAGIFLHRSSDDAIAKGNYVHENGDAGLAMLESFNADVSENTFENNKYG 177

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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.830e-14
Identity = 46/90 (51.11%), Postives = 54/90 (60.00%), Query Frame = 0

Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFVNTSGGN--GIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 88
            SDYL I  N V+NN  HGIIASKRCNN+ I  N V   G +  GI LHRS DDS +  N +    D GIA+ ETS   I  N V  G++G
Sbjct:  239 SDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFG 328

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 21


Match Name	E-value	Identity	Description
A0A6H5K1D5_9PHAE	3.080e-19	53.26	MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ...	[more]
D8LD45_ECTSI	1.400e-18	53.26	Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu...	[more]
Q7XAJ8_9PHAE	3.930e-17	48.89	Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina...	[more]
D8LC73_ECTSI	1.360e-15	50.00	Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili...	[more]
Q7XAK0_9PHAE	3.510e-15	45.56	Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina...	[more]
D7FXE5_ECTSI	7.170e-15	46.67	Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu...	[more]
D7G339_ECTSI	8.430e-15	46.67	Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu...	[more]
D7FXE4_ECTSI	8.450e-15	46.67	Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu...	[more]
D8LHA3_ECTSI	1.460e-14	46.67	Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu...	[more]
D7FRR8_ECTSI	3.830e-14	51.11	Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 25..47 e-value: 8800.0 score: 0.5 coord: 49..71 e-value: 34.0 score: 13.3 coord: 1..23 e-value: 2.8 score: 16.9
IPR022441	Parallel beta-helix repeat-2	TIGRFAM	TIGR03804	TIGR03804	coord: 42..85 e-value: 2.4E-8 score: 31.5
IPR007742	Periplasmic copper-binding protein NosD, beta helix domain	PFAM	PF05048	NosD	coord: 4..84 e-value: 2.6E-10 score: 40.0
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..89 e-value: 1.0E-22 score: 82.5
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 2..85

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1134	contig	F-serratus_M_contig1134:10249..11953 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1134.1183.1	mRNA_F-serratus_M_contig1134.1183.1	Fucus serratus male	mRNA	F-serratus_M_contig1134 10249..11954 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig1134.1183.1 ID=prot_F-serratus_M_contig1134.1183.1|Name=mRNA_F-serratus_M_contig1134.1183.1|organism=Fucus serratus male|type=polypeptide|length=89bp
SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFVNTSGGNGIMLHRSCD
DSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWGA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006626	PbH1
IPR022441	Para_beta_helix_rpt-2
IPR007742	NosD_dom
IPR012334	Pectin_lyas_fold
IPR011050	Pectin_lyase_fold/virulence