mRNA_F-serratus_M_contig1134.1183.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1134.1183.1
Unique NamemRNA_F-serratus_M_contig1134.1183.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: A0A6H5K1D5_9PHAE (MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.080e-19
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFVNTSGGN----GIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 264
            SD+LTIH+N V++N  HGIIASKRCNN+SI+ N V   GGN    GI LHRS D +++ DN  YG+ D G+A+ E+S   I+GNI    K+G
Sbjct:   81 SDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIV--YGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYG 170
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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.400e-18
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFVNTSGGN----GIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 264
            SD+LTIH+N V++N  HGIIASKRCNN+SI+ N V   GGN    GI LHRS D +++ DN  YG+ D G+A+ E+S   I+GNI    K+G
Sbjct:  381 SDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIV--YGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYG 470
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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.930e-17
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 264
            SD+LTIH+N VWNN  HGIIASKRCN +SI+ N V   +SG  GI LHRS D+ ++  N V+ + D G+A+ E+    ++ N   N K+G
Sbjct:  263 SDFLTIHDNEVWNNGYHGIIASKRCNGVSIQGNEVYGGSSGSAGIFLHRSSDNGIVKGNYVHDNGDAGLAMLESFNADVSDNTFENNKYG 352
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BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.360e-15
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFVNTSGGN--GIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 264
            SDYLTI  N V+NN  HGIIASKRCNN+ I  N V   G    GI LHRS D + + DN +    D GIA+ E+    I GNI++  K+G
Sbjct:  679 SDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYG 768
[Close]
BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.510e-15
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 264
            SD+LT+H+N V++N  HGIIASKRCN +SI+ N V    S   GI L+RS DD+++  N V+ + D G+A+ E+    ++ NI  N K+G
Sbjct:   56 SDFLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYG 145
[Close]
BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 7.170e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 264
            SD+LTIH+N V+NN  HGIIASKRCN +SI+ N V        GI LHRS DD+++  N V+ + D G+A+ E+    ++ N   N K+G
Sbjct:  292 SDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYG 381
[Close]
BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 8.430e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 264
            SD+LTIH+N V+NN  HGIIASKRCN +SI+ N V        GI LHRS DD+++  N V+ + D G+A+ E+    ++ N   N K+G
Sbjct:  292 SDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYG 381
[Close]
BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 8.450e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 264
            SD+LTIH+N V+NN  HGIIASKRCN +SI+ N V        GI LHRS DD+++  N V+ + D G+A+ E+    ++ N   N K+G
Sbjct:  296 SDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYG 385
[Close]
BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D8LHA3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA3_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.460e-14
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFV--NTSGGNGIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 264
            SD+LTIH+N V+NN  HGIIASKRCN +SI+ N V        GI LHRS DD++   N V+ + D G+A+ E+    ++ N   N K+G
Sbjct:   88 SDFLTIHDNEVYNNGYHGIIASKRCNGVSIRGNEVYGGAETSAGIFLHRSSDDAIAKGNYVHENGDAGLAMLESFNADVSENTFENNKYG 177
[Close]
BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.830e-14
Identity = 46/90 (51.11%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFVNTSGGN--GIMLHRSCDDSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWG 264
            SDYL I  N V+NN  HGIIASKRCNN+ I  N V   G +  GI LHRS DDS +  N +    D GIA+ ETS   I  N V  G++G
Sbjct:  239 SDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFG 328
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1134.1183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5K1D5_9PHAE3.080e-1953.26MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LD45_ECTSI1.400e-1853.26Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAJ8_9PHAE3.930e-1748.89Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
D8LC73_ECTSI1.360e-1550.00Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
Q7XAK0_9PHAE3.510e-1545.56Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
D7FXE5_ECTSI7.170e-1546.67Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI8.430e-1546.67Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI8.450e-1546.67Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LHA3_ECTSI1.460e-1446.67Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI3.830e-1451.11Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1134contigF-serratus_M_contig1134:10249..11954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.5e-13
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size268
Cds size267
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1134.1183.1prot_F-serratus_M_contig1134.1183.1Fucus serratus malepolypeptideF-serratus_M_contig1134 10249..11953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929034.307247-CDS-F-serratus_M_contig1134:10248..102911622929034.307247-CDS-F-serratus_M_contig1134:10248..10291Fucus serratus maleCDSF-serratus_M_contig1134 10249..10291 +
1690962675.5312374-CDS-F-serratus_M_contig1134:10248..102911690962675.5312374-CDS-F-serratus_M_contig1134:10248..10291Fucus serratus maleCDSF-serratus_M_contig1134 10249..10291 +
1622929034.322752-CDS-F-serratus_M_contig1134:10825..109481622929034.322752-CDS-F-serratus_M_contig1134:10825..10948Fucus serratus maleCDSF-serratus_M_contig1134 10826..10948 +
1690962675.5424368-CDS-F-serratus_M_contig1134:10825..109481690962675.5424368-CDS-F-serratus_M_contig1134:10825..10948Fucus serratus maleCDSF-serratus_M_contig1134 10826..10948 +
1622929034.3381302-CDS-F-serratus_M_contig1134:11852..119531622929034.3381302-CDS-F-serratus_M_contig1134:11852..11953Fucus serratus maleCDSF-serratus_M_contig1134 11853..11953 +
1690962675.552026-CDS-F-serratus_M_contig1134:11852..119531690962675.552026-CDS-F-serratus_M_contig1134:11852..11953Fucus serratus maleCDSF-serratus_M_contig1134 11853..11953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1134.1183.1

>prot_F-serratus_M_contig1134.1183.1 ID=prot_F-serratus_M_contig1134.1183.1|Name=mRNA_F-serratus_M_contig1134.1183.1|organism=Fucus serratus male|type=polypeptide|length=89bp
SDYLTIHNNTVWNNAKHGIIASKRCNNLSIKFNFVNTSGGNGIMLHRSCD
DSLIIDNEVYGSTDTGIALTETSRTLITGNIVSNGKWGA
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mRNA from alignment at F-serratus_M_contig1134:10249..11954+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1134.1183.1 ID=mRNA_F-serratus_M_contig1134.1183.1|Name=mRNA_F-serratus_M_contig1134.1183.1|organism=Fucus serratus male|type=mRNA|length=1706bp|location=Sequence derived from alignment at F-serratus_M_contig1134:10249..11954+ (Fucus serratus male)
AGCGACTACCTCACCATCCACAACAACACCGTGTGGAACAACGGTGAGAG
ATATTGCCTTCCAAGTCGTGTAGAAAGCCGGGGTGTTCCACAAGGAATGG
CGCGATTTTTTCTTGGCGATCCCGTTAAGACTCCCCTCGACGAAGTACGT
CCCCGCTAACGCAACCGCACGTGTCACCCTTTCAAAATTTCCACACGGTT
TATTTTTGAAGGAGCGTGTGTACGGACGGAGGACAACGAGGGTCACGCTG
ATGTCTGATTCTCAGGAAACCTGTTGATTTTCAAGTCTGATTCTGATAAA
ACCTGTATAATTTTGAGTAGAATAAGTACACACTTGCGTCCATGTTTACC
GTACGTGTTGCAACCGGAAGAGTTTCAGGGACGCAAGCGGGGCAGTTATC
TCGTAACTGCTGTATGAATACCTCGAATCGACGAAGGAGCGATACGTAGA
GCCCGCCCCACGTATGCTGAAGCAGGAAGTACATTTAGCGTTTTCTCCCT
TGGTAGATACCGACCGATGAAAACGCAAAGCTTTGGCTGCTTTTTTCTTT
TTTCTCGCGGGGGTGGGGGGGTTCTAGCCAAGCACGGCATCATCGCTTCG
AAGCGGTGCAACAACTTGAGCATCAAGTTCAATTTCGTCAATACTAGCGG
CGGCAACGGCATCATGCTGCACCGGAGCTGCGACGACTCCTTGATCATCG
GTGAGCGGCCTTGTTGTCGAGTCTCTGATATATTGCCAATACTGTTGTAC
GAGCTCGTTCATTGTGTTTTTCCTGCTTCTTTTTTAAAAATCAGTCGAGG
GAGAACAAATGAAGAAACGAGTCCTCTGGTATGGTCACACACTTTGTTTT
TTTGTTTTTCCGTAGTCGCCCCTCCCCCTTCTCAGCCTAAAACGCTAAAT
ATATACATTGTATACGTCATATACAGCACAAGCACAATCCATGGTAGTTG
TACGCCATTCGTTTCAAGGATTACATACAGTATCCATGGCATTATTTATT
ACGGTATTTATTATTATTTTCCGGGAAGGTGAAAAGATTCTGCCCCCATC
CCTCCCCCAGATTTTTTGTAGGAAAACAAAAATAAGTCGCTACGACTGAG
ACCACGGTTCGTAGTGTAGAACATGTGGTGTCATGTACGGTAAGGCGGCA
GCTCCGCATCGATTCGGTAGTAGTAGGTACTGCAGCGTTACACGCAGTTG
TTCTGGCCACCCCGGAGAGATCTTACTTCACTAGAAAATATTCGCTGTCG
ACAATATTCACCTAAACAAGGGCGGTTAAAGGTCGAACTTTCCTATGCAG
ACAGCGCTTCTGGGGGAAAAAAaccCGTTTTACCTCGCCGCGCGTTTTTT
GTTcGGGGGGAAGAGTTGTCGTTTTTTTGGGAGTTATCTTGTTTTCTGGC
GTTATGTAGGGGAGTTGTTTCTGTCACTGGCCGCAGAAGGTCCCACCACC
TGCCAAGCATCGACAGATAACTTCCAAGTCTTTATTTTGTTATTCTTACA
TTGATAGTCTATATAGAGCTATAGAGCTGAGACCTTATTTTTCAATGAGG
CTGGCTTTTGATGAGGTAGCTGACACAGGTGTGCACTATCTTTTTCTGTC
TCAGACAACGAGGTGTACGGAAGTACCGACACCGGGATTGCCCTCACGGA
AACGAGTCGAACGCTCATCACCGGCAACATCGTGTCAAACGGAAAGTGGG
GTGCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1134:10249..11954+

>mRNA_F-serratus_M_contig1134.1183.1 ID=mRNA_F-serratus_M_contig1134.1183.1|Name=mRNA_F-serratus_M_contig1134.1183.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig1134:10249..11954+ (Fucus serratus male)
AGCGACTACCTCACCATCCACAACAACACCGTGTGGAACAACGAGCGACT
ACCTCACCATCCACAACAACACCGTGTGGAACAACGCCAAGCACGGCATC
ATCGCTTCGAAGCGGTGCAACAACTTGAGCATCAAGTTCAATTTCGTCAA
TACTAGCGGCGGCAACGGCATCATGCTGCACCGGAGCTGCGACGACTCCT
TGATCATCGCCAAGCACGGCATCATCGCTTCGAAGCGGTGCAACAACTTG
AGCATCAAGTTCAATTTCGTCAATACTAGCGGCGGCAACGGCATCATGCT
GCACCGGAGCTGCGACGACTCCTTGATCATCGACAACGAGGTGTACGGAA
GTACCGACACCGGGATTGCCCTCACGGAAACGAGTCGAACGCTCATCACC
GGCAACATCGTGTCAAACGGAAAGTGGGGTGCTACAACGAGGTGTACGGA
AGTACCGACACCGGGATTGCCCTCACGGAAACGAGTCGAACGCTCATCAC
CGGCAACATCGTGTCAAACGGAAAGTGGGGTGCT
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