mRNA_F-serratus_M_contig1134.1190.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1134.1190.1
Unique NamemRNA_F-serratus_M_contig1134.1190.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1134.1190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1134contigF-serratus_M_contig1134:219072..220233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929034.134536-CDS-F-serratus_M_contig1134:219071..2192051622929034.134536-CDS-F-serratus_M_contig1134:219071..219205Fucus serratus maleCDSF-serratus_M_contig1134 219072..219205 +
1690962675.473008-CDS-F-serratus_M_contig1134:219071..2192051690962675.473008-CDS-F-serratus_M_contig1134:219071..219205Fucus serratus maleCDSF-serratus_M_contig1134 219072..219205 +
1622929034.1924102-CDS-F-serratus_M_contig1134:220045..2202321622929034.1924102-CDS-F-serratus_M_contig1134:220045..220232Fucus serratus maleCDSF-serratus_M_contig1134 220046..220232 +
1690962675.4865608-CDS-F-serratus_M_contig1134:220045..2202321690962675.4865608-CDS-F-serratus_M_contig1134:220045..220232Fucus serratus maleCDSF-serratus_M_contig1134 220046..220232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1134.1190.1prot_F-serratus_M_contig1134.1190.1Fucus serratus malepolypeptideF-serratus_M_contig1134 219072..220232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1134.1190.1

>prot_F-serratus_M_contig1134.1190.1 ID=prot_F-serratus_M_contig1134.1190.1|Name=mRNA_F-serratus_M_contig1134.1190.1|organism=Fucus serratus male|type=polypeptide|length=107bp
KNASSPKNYGRRGVAAESAGGGVRSVGRADGTDDAGSGRFLRLVRVSGNS
SSASSREGARDGDSLYASQGAAGPRNGASGPRRDARRPASAISLAEAAPG
RARWEGE
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mRNA from alignment at F-serratus_M_contig1134:219072..220233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1134.1190.1 ID=mRNA_F-serratus_M_contig1134.1190.1|Name=mRNA_F-serratus_M_contig1134.1190.1|organism=Fucus serratus male|type=mRNA|length=1162bp|location=Sequence derived from alignment at F-serratus_M_contig1134:219072..220233+ (Fucus serratus male)
AAAAACGCCTCCTCTCCTAAAAACTACGGCAGGCGCGGGGTCGCCGCCGA
ATCAGCGGGCGGAGGCGTTCGATCGGTGGGTCGCGCCGATGGGACGGACG
ACGCGGGGAGCGGTCGCTTCCTAAGGCTCGTGAGGTGAGTACAGTACCGT
AAGGCAATACCAGATCGACGTGCGAGGGTGTCTGTAGCAAGGCAGGAGGC
AAATGAAACCAGCCTTCTGGGGATAATGGCGTAGTTCTTATCGGTTCCTC
ACCCGTCTTCCCCGCCCCCACCCCCCGTCCTTCACCCGCTGCTGCATCCA
AATACAGACTCGACGGTATACAAAGTTAACCACTTTCATTCGAGCACGAA
AGCATGCCTCTTTCATCAAAAACCATGTGCCCCGACAAAGATGGGGAATT
TCCCCTCCCCAGGTTACGTTCTAAGATAAAACGTTATGAAGCTATAAATC
AAGGTTATCACCTTTGGATGGGGAGCCTCGTTGCCACAAGAAAAAGCTCC
ACCGGTTTTTGGTAACTTTTTTCGTTTTTCGCTTTCGCACTGGATAAACA
AACATACAAAGTAGCAGCAGCAGCAGCAGCAGCGGCAGCCCTATTGGGAT
CCGAATCTCCTCCAGCCGAACGAAACACCTTGTGCTCAAAACAGCAGGAG
TACTTGTACAGCGCTTTCCTCCCCCGGGGTGGCTTGCGTGCATCATCAAG
CGAAAGTTACAacccgccgcgagattccccttACCCAGCGCCCCGCCCCC
TCCCGCACTAGTGTTCCGGCCACGGAAGCAAGAACTTTCTGACGCGAAAC
TATTCCGCGGGCTGTCGaAAACAAGGACCCTTTCGATGCAACGCGCCTTA
CAAGACGGTGGTTAGCACGAGACGATGAATGTGTTGACTTTCCTTTGTCT
TGGGGGTCTCCGCGCGCGTGCGCTCTTGTCTTCTGATTCATCCCCTCGCG
TTCTCGTCGAACCCGCCACTGCAGGGTCTCCGGTAACTCTTCCTCTGCGT
CCTCGAGGGAAGGAGCACGCGACGGTGACTCACTCTACGCTTCACAGGGC
GCCGCAGGGCCTCGGAATGGCGCCAGCGGCCCGAGGCGAGACGCTCGGCG
TCCAGCGTCAGCGATATCGTTAGCAGAGGCGGCGCCTGGGCGAGCAAGGT
GGGAGGGCGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1134:219072..220233+

>mRNA_F-serratus_M_contig1134.1190.1 ID=mRNA_F-serratus_M_contig1134.1190.1|Name=mRNA_F-serratus_M_contig1134.1190.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig1134:219072..220233+ (Fucus serratus male)
AAAAACGCCTCCTCTCCTAAAAACTACGGCAGGCGCGGGGTCGCCGCCGA
ATCAGCGGGCGGAGGCGTTCGATCGGTGGGTCGCGCCGATGGGACGGACG
ACGCGGGGAGCGGTCGCTTCCTAAGGCTCGTGAGAAAAACGCCTCCTCTC
CTAAAAACTACGGCAGGCGCGGGGTCGCCGCCGAATCAGCGGGCGGAGGC
GTTCGATCGGTGGGTCGCGCCGATGGGACGGACGACGCGGGGAGCGGTCG
CTTCCTAAGGCTCGTGAGGGTCTCCGGTAACTCTTCCTCTGCGTCCTCGA
GGGAAGGAGCACGCGACGGTGACTCACTCTACGCTTCACAGGGCGCCGCA
GGGCCTCGGAATGGCGCCAGCGGCCCGAGGCGAGACGCTCGGCGTCCAGC
GTCAGCGATATCGTTAGCAGAGGCGGCGCCTGGGCGAGCAAGGTGGGAGG
GCGAGGGTCTCCGGTAACTCTTCCTCTGCGTCCTCGAGGGAAGGAGCACG
CGACGGTGACTCACTCTACGCTTCACAGGGCGCCGCAGGGCCTCGGAATG
GCGCCAGCGGCCCGAGGCGAGACGCTCGGCGTCCAGCGTCAGCGATATCG
TTAGCAGAGGCGGCGCCTGGGCGAGCAAGGTGGGAGGGCGAG
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