mRNA_F-serratus_M_contig1133.1181.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1133.1181.1 vs. uniprot
Match: D7FSQ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ6_ECTSI) HSP 1 Score: 870 bits (2247), Expect = 9.460e-297 Identity = 500/1010 (49.50%), Postives = 658/1010 (65.15%), Query Frame = 1
Query: 121 VLGIWSAAAISVELSEVLSVGEATAVGEFTTISTNRLASDYGGIDPIGSDCSGTKCVGTFTRDGSLELDSMYGCTQPNQSFVNPLYADTCGVEYNIETAAGD-STLSAVHVAFHPDSSRTVQVLVDGDVVVDEWEGSAGE-ELQAIPGVEGEEGSSVTVQGVLEVGEYLGILEVXXXXXXXXVEVIGVSASSRINISSTATSDEASAIYTLDGDAFDQSAWTCVSGE-VCEITYDFGAVESLEQVRIAFADVTDTGGEFTVYAAGEAGVFYSVRTDIEAGGRPVGSDGLQTFGGIRALARYVTIEATPS-DGGTIGITEASARPPRKLDAPQRAVAEKPWLKETGPLPAGRTDSNYDYPVYDVRVSSDGGCDSPGVFSGCHIFYIKDGDTSSDSRWSCGPTAAGDSTTSSSPFDDGTVCAVAFELNIFRYVRQVQLAFHLGDEQHFEFAIQAYTKDYEWATVVPSAISSGTTVDLETFDVSVHTDTLRIVPSFQSIGQMFGIKEMVILEKRKKAFVEGTVPVFN-----TREDFVSCGASG-YDSILPVRRFVCQADRSSVGDSYRMYIPAANVSGLRMKFPKDRTFTFDIVYRNSNFDD-VSQRFTSAGGEKTFETFSISAPSTNDIE----IVAVEGPTFENKPSYPTLRVVDFQILGELVKPSGTFDMVSTAVTTWGYYNGAFGWGRIPDLIAEASADQEVIMTAICETKGAAFDGTDCVGELDETAVTILLPPVPNGGGFFVNGPIFLKSNVTLEG-DWIPEFGTWSYFYVYDGPNIYSTGEDAVIVIDETTGVSLEYIYFSGWWEGVTGSIVPGTVGNIGLEVRNSQDLELRGELEFNSARSGAARFTDSSNITAFAFWVGEYETGNFLELTRVDNFYISAPPEMTGLLIDTCTNVVFEG-AYDTFEIPDPGLYPPTGGEQTSNVVITGDSSGIVFKNMPVGPGIEPR-ILMETTEPLTMDDIPEYEEAETGDCIVQVPEGSTEETLVQLNSDDILTLSGDCWVY 3096
+LGI AISVELSEVL + EA A GE +S + + YGG DPI DC+ +CVG TRDGSLELDS YGCT P YA CGV++ + D S L V +A HPDS ++VLVDG +++EW+ G ELQ IPG+EG EG ++++GV G+YL ILEV VE +GVSAS+R +IS+TAT++ ASAI TLDGDA D S+W C+S E CEITYD AVESL+Q+RIAF+ TD G + V AAGE+GVF VR+ +EAGGRP+GSDGLQTFGG+ ALARYV IEA PS +GG I I E R DAP R V+EK WL+ TG LP + +P +D R S GGCDSP F GCH++YIKDGD S DSRW+CGP AAG+ +++ C + LN FRYVRQ+Q AFH+GDEQ+ EF+I+ TVV SAISSG + D +TFD+ VHT+ +R+VP FQ + Q GIKEMVILE ++ F+ GT+PVF+ R D +SG D +P R F R D ++ +P + V+ ++++FP DR F F + Y D+ + + FTSAGG T ETF++SAP+ D+E I AV GPTFE++P YPTLRV+DFQI+GE+ K G F++V+T +T W +PD+I + +DQE IMT ICETKG AFDGTDCVGELD+++V I + G +F++GP+FLKS VTL G D+ + +Y +++ + EDAVIVID TG ++ +Y +TG I PGT+GN+ LEVR SQDL+L E++ + AR+GAARF DS NI+ GEYETGNF+E+ VD+F+ PE+ GL I+ NVV +G A + +E+P P PPTGG+Q ++VVITG SSGIVF++ + G + +LME+TEPLT+D+I YE AE+GDCI+ VP S ++ +VQLNS IL+ GDCWV+
Sbjct: 16 LLGIVGCEAISVELSEVLPIEEAYATGEHAGLSASSIEDFYGGEDPIDGDCAVGRCVGLLTRDGSLELDSRYGCTPP--------YAGFCGVDFALSADFVDKSILGGVTIALHPDSMSKLRVLVDGATILEEWDAVPGSSELQEIPGLEGVEGGRLSIEGVEGAGDYLAILEVGIYIVVDEVEPLGVSASTRTSISATATTNNASAILTLDGDATDGSSWACLSSEGACEITYDLQAVESLQQLRIAFSTNTDAGAKLNVLAAGESGVFSYVRSGLEAGGRPLGSDGLQTFGGVLALARYVRIEAVPSGEGGAIVINEVELR---VGDAPVRPVSEKAWLQPTGMLPLAADTGSSGHPNFDNREPSAGGCDSPAHFEGCHVYYIKDGDMSDDSRWTCGPLAAGNLVSNNED------CHLMLSLNYFRYVRQIQFAFHMGDEQYNEFSIE---------TVVSSAISSGDSTDYQTFDIEVHTNEIRLVPVFQRVDQWIGIKEMVILETKEMGFINGTLPVFDYSYWFPRGDGGDDDSSGDSDEDVPTR-FEFHMPRPE--DYFQFRVPPSTVTAVKLRFPSDRQFVFRVSYDEIETDEEIVEEFTSAGGPDTMETFTLSAPA--DVERFVYITAVSGPTFESQPDYPTLRVIDFQIVGEIKKDPGHFEVVTTTMTVWRV---------VPDIIGDGVSDQEEIMTTICETKGGAFDGTDCVGELDDSSVHISM----KNGHYFLDGPVFLKSGVTLSGGDYSYNEPSRTYLVLHNHTRL----EDAVIVIDGVTGGEVDSVYIEHQTP-MTGDITPGTLGNLCLEVRGSQDLKLA-EIDCHQARTGAARFVDSKNISVSVIRDGEYETGNFMEVDGVDDFHFEGIPEVAGLRIEDSNNVVLQGGASNVYEVPTPVFLPPTGGDQAASVVITGASSGIVFQDCSIYAGGDTAPVLMESTEPLTLDNILGYEAAESGDCIIDVPPESGDDLIVQLNSYAILSKDGDCWVW 975
BLAST of mRNA_F-serratus_M_contig1133.1181.1 vs. uniprot
Match: A0A6H5JDS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS6_9PHAE) HSP 1 Score: 859 bits (2219), Expect = 2.590e-292 Identity = 503/1040 (48.37%), Postives = 664/1040 (63.85%), Query Frame = 1
Query: 73 MLHNKAWAHLTGFLFGVLGIWSAAAISVELSEVLSVGEATAVGEFTTISTNRLASDYGGIDPIGSDC--SGTKCVGTFTRDGSLELDSMYGCTQPNQSFVNPLYADTCGVEYNIETAA--GD-STLSAVHVAFHPDSSRTVQVLVDGDVVVDEWEG----SAGEELQAIPGVEGEEGSSVTVQGVLEVGEYLGILEVXXXXXXXXVEVIGVSASSRINISSTATSDEASAIYTLDGDAFDQSAWTCVSG-EVCEITYDFGAVESLEQVRIAFADVTDT-GGEFTVYAAGEAGVFYSVRTDIEA--GGRPVGSDGLQTFGGIRALARYVTIEAT-PSDGGTIGITEASARPPRKLDAPQRAVAEKPWLKETGPLPAGRTDSNYDYPVYDVRVSSDGGCDSPGVFSGCHIFYIKDGDTSSDSRWSCGPTAAGDSTTSSSPFDDGTVCAVAFELNIFRYVRQVQLAFHLGDEQHFEFAIQAYTKDYEWATVVPSAISSGTTVDLETFDVSVHTDTLRIVPSFQSIGQMFGIKEMVILEKRKKAFVEGTVPVFNTREDFVSCG---ASGYDSILPVRRFVCQADRSSVGDSYRMYIPAANVSGLRMKFPKDRTFTFDIVYRNSNFDDVSQRFTSAGGEKTFETFSISAPSTND--IEIVAVEGPTFENKPSYPTLRVVDFQILGELVKPSGTFDMVSTAVTTWGYYNGAFGWGRIPDLIAEASADQEVIMTAICETKGAAFDGTDCVGELDETAVTILLPPVPNGGGFFVNGPIFLKSNVTLEGDWIPEFGTWSYFYVYDGPNIYSTGEDAVIVIDETTGVSLEYIYFSGWWEGVTGSIVPGTVGNIGLEVRNSQDLELRGELEFNSARSGAARFTDSSNITAFAFWVGE-YETGNFLELTRVDNFYISAPPEMTGLLIDTCTNVVFEGAYDTFEIPDPGLYPPT-GGEQTSNVVITGDSSGIVFKNMPVGPGIEPRILMETTEPLTMDDIPEYEEAETGDCIVQVPEGSTEETLVQLNSD------------DILTLSGDCWV 3093
M+ + W G L LG AI+VELSEVL+ T E+ + +S + G DPI DC SG +C+G TRDGSLELDS Y CT+ +S +CGV Y + GD ST+S+V +A HPDS +++QV + G ++ WE +A E+Q IPGVEG GS + + G +E+GE L ILEV +E GVSAS+R +++TA++D ASA+ TLDGD S+WTC +G EVCE+T+D AVESLEQ+RIAF++ TD GGEF+V AGE+GVF +VRT IEA RP+G+DGLQT GG+RA+ARYV + T P+ GG+I I+E R D P R VAEK WLK TGPLP P +D+R+ DGGCD P F GCH+FYIKD + DSRW+CGP AG S +D C + F LN FRY+RQ+Q+AF+ GD +H EF+I+AYT EW TVVPSAISS D +TFDV+VHT+ +R++P F I GIKE+V LEKRKK F+EGT+PVF+TR S G D +P R + D G+ M +P + V+ LRM+FP DR+F F + Y D + + FTSAGG KT+ETF++S P+ D +E+VAV GPTF++ P YP LRVVD Q++GEL K G D+V+T + TWG +PD+I E ++Q+ +M AICE KG+ FDG DCVGELD++ VTI L G ++++GPIFLKS V ++GDW E+ T+ + +YDG + TGEDA++V+D TG L + F E TG IVPGTVGN L VRNSQD+ E+ S R+G A FTDS N++AF F+ G+ ETGN++ELTRVD+ + A P M+G+LIDTC ++VFEG D F IP PP GG+QT+NVV+TGDSSGIVF+N V G EPRIL+E+TEPLT+D++ Y +AE GDCIV+VPEG+ E+ +VQ+ ++ +L SG CWV
Sbjct: 1 MVRSWTWIGSIGSLLLSLGPHHTGAITVELSEVLAPSAITVDAEW------QGSSSFSGTDPISHDCPLSG-RCIGQLTRDGSLELDSRYDCTRLLESA-------SCGVRYGLIDGGQWGDLSTISSVRIALHPDSVQSLQVGI-GRNELEAWEADPDLTAAGEMQEIPGVEGLTGSDLYIYGDMEIGESLRILEVEIYVAVDEIEATGVSASTRAFVTATASADSASAMNTLDGDVSASSSWTCSAGDEVCEVTFDLQAVESLEQLRIAFSEETDAVGGEFSVMTAGESGVFSAVRTGIEADPAARPLGTDGLQTVGGVRAMARYVKLGVTVPTSGGSIAISEVEFRVGE--DVPARPVAEKAWLKTTGPLPRAVNPGGSQDPSFDIRLPEDGGCDPPIHFEGCHVFYIKD--ENMDSRWTCGPLVAGSDRNS---WD----CDLEFSLNYFRYIRQIQIAFYTGDGEHNEFSIEAYTAAGEWVTVVPSAISSEDGSDYQTFDVAVHTNMIRLLPKFGQITDFIGIKELVFLEKRKKDFIEGTIPVFSTRIRSTSNDDEEEDGADVDIPTR---FEFDLQIEGNYIDMNVPPSTVTALRMRFPADRSFVFMVEY-----DGIVEEFTSAGGPKTWETFTLSTPAEVDFGLEVVAVTGPTFDHIPDYPALRVVDLQVVGELRKEPGYIDVVTTTIETWGV---------VPDVIGEGVSEQKTVMKAICEAKGSTFDGIDCVGELDDSEVTIKL----QFGDYYIDGPIFLKSGVFIDGDWKDEYPTFCWLVLYDGDSNTVTGEDAMVVVDGATGAELYGLAFVRK-EDPTGDIVPGTVGNTNLAVRNSQDIRFS-EMGLFSGRNGGATFTDSRNMSAFIFYNGDGLETGNYMELTRVDDVHFRALPNMSGVLIDTCNDIVFEGV-DEFAIPSAYFSPPVAGGDQTANVVVTGDSSGIVFQNFIVAAGAEPRILVESTEPLTLDNVIRYTDAEIGDCIVEVPEGTDEDFVVQVRTNPFSDTSSIDTINQLLAKSGTCWV 990
BLAST of mRNA_F-serratus_M_contig1133.1181.1 vs. uniprot
Match: D8LG23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG23_ECTSI) HSP 1 Score: 435 bits (1119), Expect = 2.500e-134 Identity = 273/574 (47.56%), Postives = 357/574 (62.20%), Query Frame = 1
Query: 73 MLHNKAWAHLTGFLFGVLGIWSAAAISVELSEVLSVGEATAVGEFTTISTNRLASDYGGIDPIGSDC--SGTKCVGTFTRDGSLELDSMYGCTQPNQSFVNPLYADTCGVEYN-IETAAGD--STLSAVHVAFHPDSSRTVQVLVDGDVVVDEWEG----SAGEELQAIPGVEGEEGSSVTVQGVLEVGEYLGILEVXXXXXXXXVEVIGVSASSRINISSTATSDEASAIYTLDGDAFDQSAWTCVSG-EVCEITYDFGAVESLEQVRIAFADVTDT-GGEFTVYAAGEAGVFYSVRTDIEA--GGRPVGSDGLQTFGGIRALARYVTIEAT-PSDGGTIGITEASARPPRKLDAPQRAVAEKPWLKETGPLPAGRTDSNYDYPVYDVRVSSDGGCDSPGVFSGCHIFYIKDGDTSSDSRWSCGPTAAGDSTTSSSPFDDGTVCAVAFELNIFRYVRQVQLAFHLGDEQHFEFAIQAYTKDYEWATVVPSAISSGTTVDLETFDVSVHTDTLRIVPSFQSIGQMFGIKEMVILEKRKKAFVEGTVPVFNTREDFVSCGASGYDSILPVRRFVC 1752
M+ + W G L LG AI+VELSEVL+ T E+ + +S + G DPI DC SG +C+G TRDGSLELDS Y CT+ +S +CGV Y I++A D +T+S+V +A HPDS ++ QV + D + + WE +A E+Q IPGVEG GS + + G +E+GE L ILEV VE GVSAS+R ++++TA++D SA+ TLDGDA S+WTC SG EVCEIT+D AVESLEQ+RIAF++ TD GGEF+V AGE+GVF +VRT +EA GRPVG+DGLQTFGG+RA+ARYV + T P+ GGTI I+E R D P R VAEK WLK TGPLP + P YD+R+ DGGCD P F GCH+FYIKD + DSRW+CGP AG +S +D C + F LN FRY+RQ+Q+AF+ GD +H EF+I+AYT EW TVVPSAIS+ D +TFDV+VHT+ +R++P F I GIKE+ E+ +G + R+D + A G D + +R VC
Sbjct: 1 MVRSWTWTGSIGSLLLSLGRHHTGAITVELSEVLAPSAITVDAEW------QGSSSFSGTDPISHDCPLSG-RCIGELTRDGSLELDSRYDCTRLLESA-------SCGVRYGLIDSAQWDDRTTISSVKIALHPDSVQSFQVGIGQDEL-EAWEADPDLTAAGEMQEIPGVEGLTGSDLYIYGDMEIGESLRILEVEIYITVDEVEATGVSASTRASVTATASADSVSAMNTLDGDASAASSWTCSSGDEVCEITFDLQAVESLEQLRIAFSEETDAVGGEFSVMVAGESGVFSAVRTGLEADPAGRPVGTDGLQTFGGVRAMARYVKLGVTVPTSGGTIAISEVELRVGE--DVPARPVAEKAWLKTTGPLPRAVSSGGSLDPSYDIRLPEDGGCDPPIHFEGCHVFYIKD--ENMDSRWTCGPLVAGSDRSS---WD----CELDFSLNYFRYIRQIQIAFYTGDGEHNEFSIEAYTAAGEWVTVVPSAISAEDGSDYQTFDVAVHTNMIRLLPKFGQITDFIGIKEVGNPER-----TDGVLAPHFGRQDRPAISAGG-DPLSFLRCTVC 542
BLAST of mRNA_F-serratus_M_contig1133.1181.1 vs. uniprot
Match: D8LG22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG22_ECTSI) HSP 1 Score: 409 bits (1051), Expect = 2.200e-126 Identity = 227/476 (47.69%), Postives = 311/476 (65.34%), Query Frame = 1
Query: 1714 GYDSILPVRRFVCQADRSSVGDSYRMYIPAANVSGLRMKFPKDRTFTFDIVYRNSNFDDVSQRFTSAGGEKTFETFSISAPSTND--IEIVAVEGPTFENKPSYPTLRVVDFQILGELVKPSGTFDMVSTAVTTWGYYNGAFGWGRIPDLIAEASADQEVIMTAICETKGAAFDGTDCVGELDETAVTILLPPVPNGGGFFVNGPIFLKSNVTLEGDWIPEFGTWSYFYVYDGPNIYSTGEDAVIVIDETTGVSLEYIYFSGWWEGVTGSIVPGTVGNIGLEVRNSQDLELRGELEFNSARSGAARFTDSSNITAFAFWVG-EYETGNFLELTRVDNFYISAPPEMTGLLIDTCTNVVFEGAYDTFEIPDPGLYPPTGG-EQTSNVVITGDSSGIVFKNMPVGPGIEPRILMETTEPLTMDDIPEYEEAETGDCIVQVPEGSTEETLVQLNSD------------DILTLSGDCWV 3093
G D +P R + D GD M +P + V+ LRM+FP DR+F F + Y DV + FTSAGG KT+ETF+++ P+ D ++IVAV GPTF++ P YP LRVVDFQ++GEL K G D+V+T + TWG +PD+I E ++Q+ +M AICE KG+ FDG DCVGEL+++ VTI L + G ++++GPIFLKS V ++G+W E+ T+ + +Y+G + TGEDA++V+D TG L + F E TG IVPGTVGN L VRNSQD++ E+ S R+G A FTDS N++AF F+ G E ETGN++ELTRVD+ + A P M+G+L DTC ++VFEG D F IP PP G +QT+NVV+TGDSSGIVF+N V G EPRIL+E+TEPLT+D++ Y +AE GDCIV+VPEG+ E+ +VQ+ ++ +L SG CWV
Sbjct: 39 GADVDIPTR---FEFDLPIEGDYIDMDVPPSTVTALRMRFPADRSFVFMVEY-----GDVVEEFTSAGGPKTWETFTLATPAEVDYGLDIVAVTGPTFDHIPDYPALRVVDFQVVGELRKEPGYIDVVTTTIETWGV---------VPDVIGEGVSEQKNVMKAICEAKGSTFDGVDCVGELNDSEVTIKL----HFGDYYIDGPIFLKSGVFIDGEWQDEYPTFCWLVLYEGDSNTVTGEDAMVVVDGATGAELYGLAFVRKEE-PTGDIVPGTVGNTNLAVRNSQDIQFS-EMGLFSGRNGGATFTDSRNMSAFIFYNGDELETGNYMELTRVDDVHFRALPNMSGVLFDTCNDIVFEGV-DDFAIPTAYFSPPVAGSDQTANVVVTGDSSGIVFQNFVVAAGAEPRILVESTEPLTLDNVIRYTDAEIGDCIVEVPEGTDEDFVVQVRTNPFSDTSSIDTINQLLAKSGTCWV 490 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1133.1181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1133.1181.1 >prot_F-serratus_M_contig1133.1181.1 ID=prot_F-serratus_M_contig1133.1181.1|Name=mRNA_F-serratus_M_contig1133.1181.1|organism=Fucus serratus male|type=polypeptide|length=1009bp MLHNKAWAHLTGFLFGVLGIWSAAAISVELSEVLSVGEATAVGEFTTISTback to top mRNA from alignment at F-serratus_M_contig1133:132998..165779- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1133.1181.1 ID=mRNA_F-serratus_M_contig1133.1181.1|Name=mRNA_F-serratus_M_contig1133.1181.1|organism=Fucus serratus male|type=mRNA|length=32782bp|location=Sequence derived from alignment at F-serratus_M_contig1133:132998..165779- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1133:132998..165779- >mRNA_F-serratus_M_contig1133.1181.1 ID=mRNA_F-serratus_M_contig1133.1181.1|Name=mRNA_F-serratus_M_contig1133.1181.1|organism=Fucus serratus male|type=CDS|length=6054bp|location=Sequence derived from alignment at F-serratus_M_contig1133:132998..165779- (Fucus serratus male)back to top |