mRNA_F-serratus_M_contig113.1169.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig113.1169.1
Unique NamemRNA_F-serratus_M_contig113.1169.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig113.1169.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 4.290e-38
Identity = 65/149 (43.62%), Postives = 101/149 (67.79%), Query Frame = 3 
Query:  258 EDV*RVLWPTEATFPSENLGELKMYTGCAFERDWDNGILDINQAAFTVNMVEQYNISTTSNISGSPGVDLGPRKEGEPGGNEEFPKYRALVGSLMWLSVMTRPDIANALCACSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSG 704
            ED   +L      FP++NLGE + + GCA ERD D G L I+Q A+  +MVE++++ +TS I  +PG DLGP++E E GG  E+P  R  +GS+MW+S  +RPD++ A+ A +RH+H P+ RHW A+ ++  Y+  T+++G+ + RGSG
Sbjct:   24 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG 169
[Close]
BLAST of mRNA_F-serratus_M_contig113.1169.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.370e-36
Identity = 64/149 (42.95%), Postives = 100/149 (67.11%), Query Frame = 3 
Query:  258 EDV*RVLWPTEATFPSENLGELKMYTGCAFERDWDNGILDINQAAFTVNMVEQYNISTTSNISGSPGVDLGPRKEGEPGGNEEFPKYRALVGSLMWLSVMTRPDIANALCACSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSG 704
            ED    L      FP++NLGE + + GCA ERD + G L I+Q A+  +MVE++++ +TS I  +PG DLGP++E E GG  E+P  R  +GS+MW+S  +RPD++ A+ A +RH+H P+ RHW A+ ++  Y+  T+++G+ + RGSG
Sbjct:   24 EDFEEFLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG 169
[Close]
BLAST of mRNA_F-serratus_M_contig113.1169.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.470e-35
Identity = 64/149 (42.95%), Postives = 101/149 (67.79%), Query Frame = 3 
Query:  258 EDV*RVLWPTEATFPSENLGELKMYTGCAFERDWDNGILDINQAAFTVNMVEQYNISTTSNISGSPGVDLGPRKEGEPGGNEEFPKYRALVGSLMWLSVMTRPDIANALCACSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSG 704
            ED   +L      FP++NLGE + + GCA ERD + G L I+Q A+  +MVE++++ +TS I  +PG DLGP++E E GG  E+P  R  +GS+MW+S  +RPD++ A+ A +RH+H P+ RHW A+ ++  Y+  T+++G+ + RGSG
Sbjct:  167 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG 312
[Close]
BLAST of mRNA_F-serratus_M_contig113.1169.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 5.660e-35
Identity = 64/149 (42.95%), Postives = 101/149 (67.79%), Query Frame = 3 
Query:  258 EDV*RVLWPTEATFPSENLGELKMYTGCAFERDWDNGILDINQAAFTVNMVEQYNISTTSNISGSPGVDLGPRKEGEPGGNEEFPKYRALVGSLMWLSVMTRPDIANALCACSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSG 704
            ED   +L      FP++NLGE + + GCA ERD + G L I+Q A+  +MVE++++ +TS I  +PG DLGP++E E GG  E+P  R  +GS+MW+S  +RPD++ A+ A +RH+H P+ RHW A+ ++  Y+  T+++G+ + RGSG
Sbjct:  231 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG 376
[Close]
BLAST of mRNA_F-serratus_M_contig113.1169.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.210e-34
Identity = 65/149 (43.62%), Postives = 101/149 (67.79%), Query Frame = 3 
Query:  258 EDV*RVLWPTEATFPSENLGELKMYTGCAFERDWDNGILDINQAAFTVNMVEQYNISTTSNISGSPGVDLGPRKEGEPGGNEEFPKYRALVGSLMWLSVMTRPDIANALCACSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSG 704
            ED   +L      FP++NLGE + + GCA ERD D G L I+Q A+  +MVE++++ +TS I  +PG DLGP++E + GG  E+P  R  VGS+MW+S  +RPD++ A+ A +RH+H P+ RHW A+ ++  Y+  T+++G+ + RGSG
Sbjct:  535 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGG--EWP-VREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG 680
[Close]
BLAST of mRNA_F-serratus_M_contig113.1169.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.560e-34
Identity = 64/149 (42.95%), Postives = 101/149 (67.79%), Query Frame = 3 
Query:  258 EDV*RVLWPTEATFPSENLGELKMYTGCAFERDWDNGILDINQAAFTVNMVEQYNISTTSNISGSPGVDLGPRKEGEPGGNEEFPKYRALVGSLMWLSVMTRPDIANALCACSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSG 704
            ED   +L      FP++NLGE + + GCA ERD + G L I+Q A+  +MVE++++ +TS I  +PG DLGP++E E GG  E+P  R  +GS+MW+S  +RPD++ A+ A +RH+H P+ RHW A+ ++  Y+  T+++G+ + RGSG
Sbjct:  944 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG 1089
[Close]
BLAST of mRNA_F-serratus_M_contig113.1169.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.720e-34
Identity = 64/149 (42.95%), Postives = 101/149 (67.79%), Query Frame = 3 
Query:  258 EDV*RVLWPTEATFPSENLGELKMYTGCAFERDWDNGILDINQAAFTVNMVEQYNISTTSNISGSPGVDLGPRKEGEPGGNEEFPKYRALVGSLMWLSVMTRPDIANALCACSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSG 704
            ED   +L      FP++NLGE + + GCA ERD + G L I+Q A+  +MVE++++ +TS I  +PG DLGP++E E GG  E+P  R  +GS+MW+S  +RPD++ A+ A +RH+H P+ RHW A+ ++  Y+  T+++G+ + RGSG
Sbjct: 1323 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG 1468
[Close]
BLAST of mRNA_F-serratus_M_contig113.1169.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.740e-34
Identity = 64/149 (42.95%), Postives = 101/149 (67.79%), Query Frame = 3 
Query:  258 EDV*RVLWPTEATFPSENLGELKMYTGCAFERDWDNGILDINQAAFTVNMVEQYNISTTSNISGSPGVDLGPRKEGEPGGNEEFPKYRALVGSLMWLSVMTRPDIANALCACSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSG 704
            ED   +L      FP++NLGE + + GCA ERD + G L I+Q A+  +MVE++++ +TS I  +PG DLGP++E E GG  E+P  R  +GS+MW+S  +RPD++ A+ A +RH+H P+ RHW A+ ++  Y+  T+++G+ + RGSG
Sbjct: 1343 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG 1488
[Close]
BLAST of mRNA_F-serratus_M_contig113.1169.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 4.770e-34
Identity = 64/149 (42.95%), Postives = 101/149 (67.79%), Query Frame = 3 
Query:  258 EDV*RVLWPTEATFPSENLGELKMYTGCAFERDWDNGILDINQAAFTVNMVEQYNISTTSNISGSPGVDLGPRKEGEPGGNEEFPKYRALVGSLMWLSVMTRPDIANALCACSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSG 704
            ED   +L      FP++NLGE + + GCA ERD + G L I+Q A+  +MVE++++ +TS I  +PG DLGP++E E GG  E+P  R  +GS+MW+S  +RPD++ A+ A +RH+H P+ RHW A+ ++  Y+  T+++G+ + RGSG
Sbjct: 1486 EDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGG--EWP-VREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG 1631
[Close]
BLAST of mRNA_F-serratus_M_contig113.1169.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 8.400e-34
Identity = 62/149 (41.61%), Postives = 104/149 (69.80%), Query Frame = 3 
Query:  258 EDV*RVLWPTEATFPSENLGELKMYTGCAFERDWDNGILDINQAAFTVNMVEQYNISTTSNISGSPGVDLGPRKEGEPGGNEEFPKYRALVGSLMWLSVMTRPDIANALCACSRHSHNPSPRHWKALLQVASYVNATKEIGLRFVRGSG 704
            +D   +L      FP+++LGE   + GCA ERD + G L I+Q A+  ++V ++++ +TS+I  SPGVD+GP+++ E GG  E+P  R  +GS+MW+S  +RPDI+ A+ A +RH+H P+ RHWKA++++ +Y+  T+++G+ + RGSG
Sbjct:  207 DDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGG--EWP-VREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSG 352
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig113.1169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBH1_9PHAE4.290e-3843.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE1.370e-3642.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE4.470e-3542.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTL3_9PHAE5.660e-3542.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQN6_9PHAE2.210e-3443.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE4.560e-3442.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.720e-3442.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE4.740e-3442.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE4.770e-3442.95Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JCG0_9PHAE8.400e-3441.61Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig113contigF-serratus_M_contig113:800234..800937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score72.8
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog7425.NV18998-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size704
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.8514225-CDS-F-serratus_M_contig113:800233..8006111622929027.8514225-CDS-F-serratus_M_contig113:800233..800611Fucus serratus maleCDSF-serratus_M_contig113 800234..800611 -
1690962673.1980586-CDS-F-serratus_M_contig113:800233..8006111690962673.1980586-CDS-F-serratus_M_contig113:800233..800611Fucus serratus maleCDSF-serratus_M_contig113 800234..800611 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929027.862796-UTR-F-serratus_M_contig113:800611..8009371622929027.862796-UTR-F-serratus_M_contig113:800611..800937Fucus serratus maleUTRF-serratus_M_contig113 800612..800937 -
1690962673.2098253-UTR-F-serratus_M_contig113:800611..8009371690962673.2098253-UTR-F-serratus_M_contig113:800611..800937Fucus serratus maleUTRF-serratus_M_contig113 800612..800937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig113.1169.1prot_F-serratus_M_contig113.1169.1Fucus serratus malepolypeptideF-serratus_M_contig113 800234..800611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig113.1169.1

>prot_F-serratus_M_contig113.1169.1 ID=prot_F-serratus_M_contig113.1169.1|Name=mRNA_F-serratus_M_contig113.1169.1|organism=Fucus serratus male|type=polypeptide|length=126bp
MYTGCAFERDWDNGILDINQAAFTVNMVEQYNISTTSNISGSPGVDLGPR
KEGEPGGNEEFPKYRALVGSLMWLSVMTRPDIANALCACSRHSHNPSPRH
WKALLQVASYVNATKEIGLRFVRGSG
back to top

mRNA from alignment at F-serratus_M_contig113:800234..800937-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig113.1169.1 ID=mRNA_F-serratus_M_contig113.1169.1|Name=mRNA_F-serratus_M_contig113.1169.1|organism=Fucus serratus male|type=mRNA|length=704bp|location=Sequence derived from alignment at F-serratus_M_contig113:800234..800937- (Fucus serratus male)
CTTGAAGAGGAGATTTATATGCACCTTCCTCCCGGTTGCGGTGAACTCTC
TGGTAAAATCGTTAAGCTTCTCAAATGTCAGTATGGTCTGAAGCAAGCTG
GTAAGGAGTGGCATCTGTTACTCGTAAGGTGGTTGGTCGAAATGATGGGG
ATGGAACAATGTAAGGCAGAGCCATGTATCTTCCGTAAGATGGTCAATGA
TAAGGTCTCACTGATGGTCGGAGTTCATATAGATGATATCATAGTGTCTG
GAGAACAGAAGATGTGTGAAGAGTTCTTTGGCCAACTGAGGCAACGTTTC
CCAGTGAAAACCTGGGGGAACTTAAGATGTACACTGGTTGCGCGTTCGAA
CGTGACTGGGACAACGGAATCCTTGATATAAATCAGGCGGCGTTCACGGT
CAACATGGTGGAACAGTATAACATTTCCACTACCTCGAACATTTCGGGGA
GTCCAGGTGTAGATCTTGGGCCAAGAAAAGAGGGCGAGCCCGGGGGTAAT
GAGGAATTTCCGAAGTATCGTGCTTTGGTTGGCAGTCTCATGTGGTTGTC
AGTCATGACTAGGCCTGATATCGCGAACGCTCTTTGCGCTTGCTCACGTC
ATAGTCATAACCCTAGTCCGCGCCACTGGAAGGCGCTTTTGCAGGTAGCT
TCGTACGTGAATGCGACGAAAGAGATTGGTTTGAGGTTCGTTCGGGGTTC
TGGT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig113:800234..800937-

>mRNA_F-serratus_M_contig113.1169.1 ID=mRNA_F-serratus_M_contig113.1169.1|Name=mRNA_F-serratus_M_contig113.1169.1|organism=Fucus serratus male|type=CDS|length=756bp|location=Sequence derived from alignment at F-serratus_M_contig113:800234..800937- (Fucus serratus male)
ATGTACACTGGTTGCGCGTTCGAACGTGACTGGGACAACGGAATCCTTGA
TATAAATCAGGCGGCGTTCACGGTCAACATGGTGGAACAGTATAACATTT
CCACTACCTCGAACATTTCGGGGAGTCCAGGTGTAGATCTTGGGCCAAGA
AAAGAGGGCGAGCCCGGGGGTAATGAGGAATTTCCGAAGTATCGTGCTTT
GGTTGGCAGTCTCATGTGGTTGTCAGTCATGACTAGGCCTGATATCGCGA
ACGCTCTTTGCGCTTGCTCACGTCATAGTCATAACCCTAGTCCGCGCCAC
TGGAAGGCGCTTTTGCAGGTAGCTTCGTACGTGAATGCGACGAAAGAGAT
TGGTTTGAGGTTCGTTCGGGGTTCTGGTATGTACACTGGTTGCGCGTTCG
AACGTGACTGGGACAACGGAATCCTTGATATAAATCAGGCGGCGTTCACG
GTCAACATGGTGGAACAGTATAACATTTCCACTACCTCGAACATTTCGGG
GAGTCCAGGTGTAGATCTTGGGCCAAGAAAAGAGGGCGAGCCCGGGGGTA
ATGAGGAATTTCCGAAGTATCGTGCTTTGGTTGGCAGTCTCATGTGGTTG
TCAGTCATGACTAGGCCTGATATCGCGAACGCTCTTTGCGCTTGCTCACG
TCATAGTCATAACCCTAGTCCGCGCCACTGGAAGGCGCTTTTGCAGGTAG
CTTCGTACGTGAATGCGACGAAAGAGATTGGTTTGAGGTTCGTTCGGGGT
TCTGGT
back to top