mRNA_F-serratus_M_contig113.1167.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig113.1167.1
Unique NamemRNA_F-serratus_M_contig113.1167.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig113.1167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig113contigF-serratus_M_contig113:733865..735008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929026.118046-CDS-F-serratus_M_contig113:733864..7340721622929026.118046-CDS-F-serratus_M_contig113:733864..734072Fucus serratus maleCDSF-serratus_M_contig113 733865..734072 +
1690962672.2180355-CDS-F-serratus_M_contig113:733864..7340721690962672.2180355-CDS-F-serratus_M_contig113:733864..734072Fucus serratus maleCDSF-serratus_M_contig113 733865..734072 +
1622929026.1335359-CDS-F-serratus_M_contig113:734945..7350071622929026.1335359-CDS-F-serratus_M_contig113:734945..735007Fucus serratus maleCDSF-serratus_M_contig113 734946..735007 +
1690962672.2282448-CDS-F-serratus_M_contig113:734945..7350071690962672.2282448-CDS-F-serratus_M_contig113:734945..735007Fucus serratus maleCDSF-serratus_M_contig113 734946..735007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig113.1167.1prot_F-serratus_M_contig113.1167.1Fucus serratus malepolypeptideF-serratus_M_contig113 733865..735007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig113.1167.1

>prot_F-serratus_M_contig113.1167.1 ID=prot_F-serratus_M_contig113.1167.1|Name=mRNA_F-serratus_M_contig113.1167.1|organism=Fucus serratus male|type=polypeptide|length=90bp
ATSKGRPDVALRGTASATAKMTEMTEGITKEVTKEMPRKRPDKLRPWFPM
NSGAVDTGWAKRSVAARTAGFDGDVMAWSLGPSAEAIGCP
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mRNA from alignment at F-serratus_M_contig113:733865..735008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig113.1167.1 ID=mRNA_F-serratus_M_contig113.1167.1|Name=mRNA_F-serratus_M_contig113.1167.1|organism=Fucus serratus male|type=mRNA|length=1144bp|location=Sequence derived from alignment at F-serratus_M_contig113:733865..735008+ (Fucus serratus male)
GCAACTTCAAAAGGAAGGCCAGATGTGGCCTTAAGAGGAACGGCAAGTGC
GACAGCAAAGATGACGGAGATGACAGAAGGTATCACCAAAGAGGTGACCA
AAGAGATGCCCAGAAAGAGGCCGGACAAGTTACGACCTTGGTTTCCAATG
AACTCGGGAGCTGTGGACACGGGGTGGGCGAAGCGTTCGGTTGCAGCGAG
GACGGCAGGTGTGTCGACAATGGTCACTGACTTCGATCGCGCGTAAAGTA
GCTGTTGGGCTTAATGCTCTCATCTGAATTGAAACAGTAGCTAGCTCAAA
TTCCTGACTATGAGCCTACCCCGAAGAACCTTCCCTGGCCGGACTTTCTT
TGAGCGCTGGGAAAGTAGTCGATCGCGAGGTCTGCCAGTGGCCATCCACA
CCTCTTCGCTACGTTTTCTGAAATGTAAATCGTCACCAGCTTCCTGCTGT
CCGACCTTTACACTCCATATGAGATCTCCACTCTCAAGCACGTTAATAGT
TCGTTTATAGTTAGCCTCCGATAGTTTCAACATGCCCGCTTCATACCAAC
AGTGCATGAAAGGGATGCGAGTATTAATTAGTCCATGGTGACCTGCAATA
GTGGCACCCGTTTCTGGAGTTACATTGAGGACTACTGGCCCTGTGCCGGT
GGACTCTCGACAGTGAACGCCATCGGTACGCAATTGCGTGACCCGATAAA
CTTGGAACTGGCCCGATGGCATATGCCGGTATAAGTAAGTGGCTGCCACC
GCGGAAATCGGGAGGAATCCCGTTGGTCAGCATCAGATTTAGTCTGAATG
TAGAGAATGAGCAGGCTGACGCGGGACGGGAACGACCGAACACGGACAAG
GAAGTATCCCTTTCCCATTTAGCTCAGCACGAGCAGGACTGGTATGTAAA
TTAGAAGCGATAAACCACTAAGTCTAGACTACTGAGTCAATCTGAATAGT
CTCGCTTCTAGTTTACGTTGTAAACTTACCTTGTTGATGCTATGTGTGAT
GGCGATACCATACATATATGCACTACGCCAGATCCGTCAATTGGACTGTG
CCGCACGTTACTATAATTTTGGTGACCGCAGGTTTCGATGGAGACGTCAT
GGCTTGGTCGCTTGGTCCATCAGCTGAAGCTATCGGTTGCCCTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig113:733865..735008+

>mRNA_F-serratus_M_contig113.1167.1 ID=mRNA_F-serratus_M_contig113.1167.1|Name=mRNA_F-serratus_M_contig113.1167.1|organism=Fucus serratus male|type=CDS|length=540bp|location=Sequence derived from alignment at F-serratus_M_contig113:733865..735008+ (Fucus serratus male)
GCAACTTCAAAAGGAAGGCCAGATGTGGCCTTAAGAGGAACGGCAAGTGC
GACAGCAAAGATGACGGAGATGACAGAAGGTATCACCAAAGAGGTGACCA
AAGAGATGCCCAGAAAGAGGCCGGACAAGTTACGACCTTGGTTTCCAATG
AACTCGGGAGCTGTGGACACGGGGTGGGCGAAGCGTTCGGTTGCAGCGAG
GACGGCAGGCAACTTCAAAAGGAAGGCCAGATGTGGCCTTAAGAGGAACG
GCAAGTGCGACAGCAAAGATGACGGAGATGACAGAAGGTATCACCAAAGA
GGTGACCAAAGAGATGCCCAGAAAGAGGCCGGACAAGTTACGACCTTGGT
TTCCAATGAACTCGGGAGCTGTGGACACGGGGTGGGCGAAGCGTTCGGTT
GCAGCGAGGACGGCAGGTTTCGATGGAGACGTCATGGCTTGGTCGCTTGG
TCCATCAGCTGAAGCTATCGGTTGCCCTGTTTCGATGGAGACGTCATGGC
TTGGTCGCTTGGTCCATCAGCTGAAGCTATCGGTTGCCCT
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