mRNA_F-serratus_M_contig113.1155.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig113.1155.1
Unique NamemRNA_F-serratus_M_contig113.1155.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig113.1155.1 vs. uniprot
Match: A0A0B6XV80_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6XV80_9EUPU)

HSP 1 Score: 51.6 bits (122), Expect = 5.080e-5
Identity = 19/31 (61.29%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:  199 PLPPEWEKKTTPTGEVYYVNHKTKETAWDRP 291
            PLPP WE++T PTG++YYVNH ++ T W+RP
Sbjct:    1 PLPPGWEEQTDPTGKIYYVNHTSRTTQWNRP 31
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BLAST of mRNA_F-serratus_M_contig113.1155.1 vs. uniprot
Match: A0A0K3CK12_RHOTO (E3 ubiquitin-protein ligase n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CK12_RHOTO)

HSP 1 Score: 53.5 bits (127), Expect = 5.570e-5
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:  127 ATNLESTMAPP--AAMATSGSSIGEPPLPPEWEKKTTPTGEVYYVNHKTKETAWDRPAV 297
            ATN ES  +P   AA+  S   +G  P+P  WE++TTP+G  Y+V+H TK T WD P +
Sbjct:  414 ATNAESPTSPADNAALEVSDEQLG--PIPSGWERRTTPSGRAYFVDHNTKTTTWDDPRI 470
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BLAST of mRNA_F-serratus_M_contig113.1155.1 vs. uniprot
Match: A0A6P4HQS6_DROTK (HECT-type E3 ubiquitin transferase n=1 Tax=Drosophila takahashii TaxID=29030 RepID=A0A6P4HQS6_DROTK)

HSP 1 Score: 53.1 bits (126), Expect = 7.950e-5
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:  148 MAPPAAMATSGSSIGEPPLPPEWEKKTTPTGEVYYVNHKTKETAWDRP 291
            M P   +A S  S GEPPLPP WE +    G ++Y++H T+ T+W RP
Sbjct:  558 MEPGTGVAMSSGSSGEPPLPPAWEARMDSHGRIFYIDHTTRTTSWQRP 605
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig113.1155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0B6XV80_9EUPU5.080e-561.29Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
A0A0K3CK12_RHOTO5.570e-545.76E3 ubiquitin-protein ligase n=4 Tax=Rhodosporidium... [more]
A0A6P4HQS6_DROTK7.950e-545.83HECT-type E3 ubiquitin transferase n=1 Tax=Drosoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig113contigF-serratus_M_contig113:76022..77694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.4
Seed ortholog evalue2.6e-07
Seed eggNOG ortholog121225.PHUM613740-PA
KEGG koko:K16687
KEGG Pathwayko04390,ko04391,ko04392,map04390,map04391,map04392
KEGG ModuleM00683
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001667,GO:0001708,GO:0002009,GO:0002011,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003007,GO:0003674,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006928,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0007399,GO:0007507,GO:0008134,GO:0008150,GO:0008283,GO:0008284,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010631,GO:0010638,GO:0010720,GO:0010941,GO:0014013,GO:0014015,GO:0016477,GO:0019219,GO:0019222,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030707,GO:0030855,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0033043,GO:0033044,GO:0035212,GO:0035329,GO:0035556,GO:0040008,GO:0040011,GO:0042127,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045165,GO:0045595,GO:0045597,GO:0045893,GO:0045927,GO:0045935,GO:0045944,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051569,GO:0051571,GO:0051674,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0060251,GO:0060252,GO:0060255,GO:0060284,GO:0060429,GO:0060548,GO:0065007,GO:0072089,GO:0072359,GO:0080090,GO:0090130,GO:0090132,GO:0140110,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:1905269,GO:1905435,GO:1905437,GO:2000026,GO:2000112,GO:2001141,GO:2001252
EggNOG free text desc.Domain with 2 conserved Trp (W) residues
EggNOG OGs38D6U@33154,3BCXM@33208,3CY7W@33213,3EATY@33342,3SGBN@50557,41VPT@6656,COG5021@1,KOG0940@2759
COG Functional cat.O
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons4
Model size574
Cds size570
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig113.1155.1prot_F-serratus_M_contig113.1155.1Fucus serratus malepolypeptideF-serratus_M_contig113 76024..77694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.9527192-CDS-F-serratus_M_contig113:76023..762251622929025.9527192-CDS-F-serratus_M_contig113:76023..76225Fucus serratus maleCDSF-serratus_M_contig113 76024..76225 -
1690962672.1554153-CDS-F-serratus_M_contig113:76023..762251690962672.1554153-CDS-F-serratus_M_contig113:76023..76225Fucus serratus maleCDSF-serratus_M_contig113 76024..76225 -
1622929025.9648015-CDS-F-serratus_M_contig113:76777..769341622929025.9648015-CDS-F-serratus_M_contig113:76777..76934Fucus serratus maleCDSF-serratus_M_contig113 76778..76934 -
1690962672.172484-CDS-F-serratus_M_contig113:76777..769341690962672.172484-CDS-F-serratus_M_contig113:76777..76934Fucus serratus maleCDSF-serratus_M_contig113 76778..76934 -
1622929025.9796042-CDS-F-serratus_M_contig113:77108..772341622929025.9796042-CDS-F-serratus_M_contig113:77108..77234Fucus serratus maleCDSF-serratus_M_contig113 77109..77234 -
1690962672.1811159-CDS-F-serratus_M_contig113:77108..772341690962672.1811159-CDS-F-serratus_M_contig113:77108..77234Fucus serratus maleCDSF-serratus_M_contig113 77109..77234 -
1622929025.9933426-CDS-F-serratus_M_contig113:77609..776941622929025.9933426-CDS-F-serratus_M_contig113:77609..77694Fucus serratus maleCDSF-serratus_M_contig113 77610..77694 -
1690962672.1896515-CDS-F-serratus_M_contig113:77609..776941690962672.1896515-CDS-F-serratus_M_contig113:77609..77694Fucus serratus maleCDSF-serratus_M_contig113 77610..77694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig113.1155.1

>prot_F-serratus_M_contig113.1155.1 ID=prot_F-serratus_M_contig113.1155.1|Name=mRNA_F-serratus_M_contig113.1155.1|organism=Fucus serratus male|type=polypeptide|length=190bp
TKETTWDRPAALRPASFSAAKPEKSKLAQNAVGKRNKIKKTKATNLESTM
APPAAMATSGSSIGEPPLPPEWEKKTTPTGEVYYVNHKTKETAWDRPAVT
EKMSASFGSAFLNFGRGLVEAISEDTENNKKPKRKKENKTKTEVETSSSS
SSSEEECEGEGATFEVSIDVEVNGEEGEDGEEDDDGEDDE
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mRNA from alignment at F-serratus_M_contig113:76022..77694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig113.1155.1 ID=mRNA_F-serratus_M_contig113.1155.1|Name=mRNA_F-serratus_M_contig113.1155.1|organism=Fucus serratus male|type=mRNA|length=1673bp|location=Sequence derived from alignment at F-serratus_M_contig113:76022..77694- (Fucus serratus male)
ACGAAGGAAACAACCTGGGATAGACCCGCGGCTCTTCGCCCAGCGAGTTT
TTCCGCCGCGAAACCCGAGAAGTCGAAACTGGCACGTGAGCAATGCGACA
CGCATCCAATCCGAGCTAGCTAGATTTTTGCCCTACGATGATGAGGGCCC
CGCCCCGTAACATGAGAACCACAAGGGAATGCTGGGTTGTGGCCGCGTTA
AAAGCGAGACGTTTGTCCCTCTAATCATCCGTCGGCCCGCGCTACATAGC
GCGTCATCGTCGTTCATAAGGCAATTACCATCCGCGTTAGGTTTGAGCAA
AAAACACGTCGATGTTTCCATTTTCAAGGAGTATCGCATTTTGAGATAGG
CATGAGCACGTCGTGGACAATCGCTTTTCGCTTCAATGAAAGCATGCCAG
TCAAGCATCCTTTTGCATTACAAACTTGCTCTCCCGCTCCCGCATTCATG
TTGGAAAAAGAAAACGCCGTCGGAAAAAGAAATAAAATAAAAAAGACCAA
AGCAACCAACTTGGAAAGTACCATGGCCCCACCTGCCGCTATGGCTACCT
CTGGTTCCAGCATCGGCGAGCCGCCTCTTCCTCCAGGTAAAATACTAAGA
GTTAAAGCACAGCGCATTCGCTGTTAAATAAAGGTGACTGTTTCTGATCT
TGACGGCATTGTATTCATCCCATAGCGCACGGTAGAACACAGTATGATAA
TGACACATATTTTTCCTCTGACCAGAGTTTCAACGTTGGTTGCTGCTCCG
TATTGGGCAGAGTGGGAGAAGAAGACGACGCCGACCGGAGAAGTTTACTA
CGTCAACCACAAGACGAAAGAAACCGCCTGGGATAGACCCGCGGTGACAG
AGAAGATGAGCGCCTCATTTGGCTCCGCCTTCTTGAACTTCGGCCGAGGA
CTTGTAGAAGCGATCAGGTGAGAGGCTGGCGCTTTTGGATGGGAAGATCG
ATGTCGGAGAGGTGGGAAAAGCGATGCTGGAGTTTTGGTTGGCGAGCTTC
GTTGCCGGGGGAAAGCGTGTCGGCGGATGGAAAGATTGCTACGAAAGTGA
CGCCGCAGGTAGAAATGAGCCATTGTCATTGCCGCTGGGGGTGCTATTTG
CTGACGCTGTCGAGAATCGGTGTGGTGGCACCTGACGCTTAGCACAATAC
GATCGTATGTGTGTGTGTGTGTTTATTGAATAACATGCACACATACCTCG
CAATCCCATCTCGTCATGACGATCGCTCTGTACTCCTTGTTCTGGTTCTC
CAGATGAGGGGATCAATCCAGGATCGATGATTGTTGCGCCCCGTGACCTT
CCGACGTCTTGCGCCCCAATCTTACATTTCCTTTTGGTCGTTTTGCTCGC
CTCGAGGCGTGTGGCTGCTTGTATATTTGGAACTATTTCTACGTAACGCC
ATAAACTGTTTATTTTCGTGCCACCCTGACCTGGCCTCCCTGTTTCCCTG
GGGTGACCTTGTACGATAGCGAGGACACCGAAAATAATAAGAAGCCAAAG
AGGAAGAAGGAAAACAAGACAAAGACCGAGGTGGAAACGTCGTCGTCGTC
GTCGTCGTCGGAAGAAGAGTGCGAGGGTGAGGGCGCCACGTTCGAGGTCA
GCATCGATGTCGAAGTAAACGGGGAGGAAGGGGAAGATGGAGAGGAGGAT
GACGATGGGGAAGATGATGAAAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig113:76022..77694-

>mRNA_F-serratus_M_contig113.1155.1 ID=mRNA_F-serratus_M_contig113.1155.1|Name=mRNA_F-serratus_M_contig113.1155.1|organism=Fucus serratus male|type=CDS|length=1140bp|location=Sequence derived from alignment at F-serratus_M_contig113:76022..77694- (Fucus serratus male)
ACGAAGGAAACAACCTGGGATAGACCCGCGGCTCTTCGCCCAGCGAGTTT
TTCCGCCGCGAAACCCGAGAAGTCGAAACTGGCACACGAAGGAAACAACC
TGGGATAGACCCGCGGCTCTTCGCCCAGCGAGTTTTTCCGCCGCGAAACC
CGAGAAGTCGAAACTGGCACAAAACGCCGTCGGAAAAAGAAATAAAATAA
AAAAGACCAAAGCAACCAACTTGGAAAGTACCATGGCCCCACCTGCCGCT
ATGGCTACCTCTGGTTCCAGCATCGGCGAGCCGCCTCTTCCTCCAGAAAA
CGCCGTCGGAAAAAGAAATAAAATAAAAAAGACCAAAGCAACCAACTTGG
AAAGTACCATGGCCCCACCTGCCGCTATGGCTACCTCTGGTTCCAGCATC
GGCGAGCCGCCTCTTCCTCCAGAGTGGGAGAAGAAGACGACGCCGACCGG
AGAAGTTTACTACGTCAACCACAAGACGAAAGAAACCGCCTGGGATAGAC
CCGCGGTGACAGAGAAGATGAGCGCCTCATTTGGCTCCGCCTTCTTGAAC
TTCGGCCGAGGACTTGTAGAAGCGATCAGAGTGGGAGAAGAAGACGACGC
CGACCGGAGAAGTTTACTACGTCAACCACAAGACGAAAGAAACCGCCTGG
GATAGACCCGCGGTGACAGAGAAGATGAGCGCCTCATTTGGCTCCGCCTT
CTTGAACTTCGGCCGAGGACTTGTAGAAGCGATCAGCGAGGACACCGAAA
ATAATAAGAAGCCAAAGAGGAAGAAGGAAAACAAGACAAAGACCGAGGTG
GAAACGTCGTCGTCGTCGTCGTCGTCGGAAGAAGAGTGCGAGGGTGAGGG
CGCCACGTTCGAGGTCAGCATCGATGTCGAAGTAAACGGGGAGGAAGGGG
AAGATGGAGAGGAGGATGACGATGGGGAAGATGATGAACGAGGACACCGA
AAATAATAAGAAGCCAAAGAGGAAGAAGGAAAACAAGACAAAGACCGAGG
TGGAAACGTCGTCGTCGTCGTCGTCGTCGGAAGAAGAGTGCGAGGGTGAG
GGCGCCACGTTCGAGGTCAGCATCGATGTCGAAGTAAACGGGGAGGAAGG
GGAAGATGGAGAGGAGGATGACGATGGGGAAGATGATGAA
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