mRNA_F-serratus_M_contig1128.1153.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1128.1153.1
Unique NamemRNA_F-serratus_M_contig1128.1153.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1128.1153.1 vs. uniprot
Match: A0A6H5L2A1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A1_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.240e-42
Identity = 82/130 (63.08%), Postives = 95/130 (73.08%), Query Frame = 1 
Query:    1 GDVIGGRYKLRADMGQGTFGRVVECWDMKQWRRVAVKIVRKARALAKNYDESVLIEAQILRDVNDREIYDRGGPNDACLCVMMFDHFEHQRHCCLVFECLGPSLHESLMKNGRRGFPLNVIRPIARELLQ 390
            GD +GGRY++  D+G GTFGRVVECW +K+ RRVAVK+VRK       Y ES LIEAQILRDVN RE   R    D  LCV MF  FEHQ HCCLVFECLG SL++ L KN  RGFP++V+R I+RELLQ
Sbjct:  415 GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRRVAVKVVRKVA----KYHESALIEAQILRDVNLRERSTRRNTIDTSLCVEMFAQFEHQGHCCLVFECLGRSLYDYLKKNDYRGFPIDVLRSISRELLQ 540
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BLAST of mRNA_F-serratus_M_contig1128.1153.1 vs. uniprot
Match: D7FR38_ECTSI (AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR38_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.770e-36
Identity = 75/130 (57.69%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:    1 GDVIGGRYKLRADMGQGTFGRVVECWDMKQWRRVAVKIVRKARALAKNYDESVLIEAQILRDVNDREIYDRGGPNDACLCVMMFDHFEHQRHCCLVFECLGPSLHESLMKNGRRGFPLNVIRPIARELLQ 390
            GD +GGRY++  D+G GTFGRVVECW +K+ R VAVK+VRK       Y ES LIEAQILRDVN RE   R    D  LCV MF  FEHQ       ECLG SL++ L KN  RGFP++V+R I+RELLQ
Sbjct:   13 GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRHVAVKVVRKVA----KYHESALIEAQILRDVNFRERSTRRNTIDTSLCVEMFAQFEHQ-----CSECLGRSLYDFLKKNDYRGFPIDVLRSISRELLQ 133
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BLAST of mRNA_F-serratus_M_contig1128.1153.1 vs. uniprot
Match: A0A835Z1U5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U5_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.390e-33
Identity = 68/130 (52.31%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:    1 GDVIGGRYKLRADMGQGTFGRVVECWDMKQWRRVAVKIVRKARALAKNYDESVLIEAQILRDVNDREIYDRGGPNDACLCVMMFDHFEHQRHCCLVFECLGPSLHESLMKNGRRGFPLNVIRPIARELLQ 390
            G V+G  Y+++ D+G GTFGRVV CWD +  R VAVK+VR+     K Y ES LIEA ILRDVN      R G   A LCV + D F+ + HCCLVFE +GPSL++ L +N  RGFPL  +R  AR+LL+
Sbjct:  181 GSVLGDGYEVQEDVGTGTFGRVVACWDRRGRRTVAVKVVRRV----KRYHESALIEADILRDVN------RAGGAGAALCVRLLDQFDARGHCCLVFERMGPSLYDVLKRNDYRGFPLRYVRDFARQLLE 300
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BLAST of mRNA_F-serratus_M_contig1128.1153.1 vs. uniprot
Match: A0A0J8B2X2_BETVV (Protein kinase domain-containing protein n=8 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0J8B2X2_BETVV)

HSP 1 Score: 110 bits (276), Expect = 3.480e-26
Identity = 56/130 (43.08%), Postives = 85/130 (65.38%), Query Frame = 1 
Query:    1 GDVIGGRYKLRADMGQGTFGRVVECWDMKQWRRVAVKIVRKARALAKNYDESVLIEAQILRDVNDREIYDRGGPNDACLCVMMFDHFEHQRHCCLVFECLGPSLHESLMKNGRRGFPLNVIRPIARELLQ 390
            GD +  RYK+ + MG+GTFGRV+ECWD ++   VA+KIVR      K Y E+ +IE  +L+ +     +D+GG      CV + + F+++ H C+VFE LGPSL++ L KN  R FP++++R I R+LL+
Sbjct:   93 GDNLTSRYKIHSKMGEGTFGRVLECWDRERKEMVAIKIVRGI----KKYREAAMIEIDVLQQLGK---HDKGGSR----CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLE 211
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BLAST of mRNA_F-serratus_M_contig1128.1153.1 vs. uniprot
Match: A0A0L9TQA5_PHAAN (Protein kinase domain-containing protein n=2 Tax=Vigna TaxID=3913 RepID=A0A0L9TQA5_PHAAN)

HSP 1 Score: 107 bits (266), Expect = 9.160e-25
Identity = 53/130 (40.77%), Postives = 85/130 (65.38%), Query Frame = 1 
Query:    1 GDVIGGRYKLRADMGQGTFGRVVECWDMKQWRRVAVKIVRKARALAKNYDESVLIEAQILRDVNDREIYDRGGPNDACLCVMMFDHFEHQRHCCLVFECLGPSLHESLMKNGRRGFPLNVIRPIARELLQ 390
            G+ +  RY++ + MG+GTFG+V+ECWD ++   VA+KI+R      K Y E+ +IE Q+L  +     +D+GG      CV + + F+++ H C+VFE LGPSL++ L KN  R FP++++R I R+LL+
Sbjct:  113 GENLTSRYRIHSKMGEGTFGKVLECWDRERKDMVAIKIIRGI----KKYREAAMIEIQVLEQLGK---HDKGGNR----CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLE 231
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BLAST of mRNA_F-serratus_M_contig1128.1153.1 vs. uniprot
Match: V4SZD0_CITCL (Protein kinase domain-containing protein n=16 Tax=rosids TaxID=71275 RepID=V4SZD0_CITCL)

HSP 1 Score: 105 bits (263), Expect = 2.390e-24
Identity = 54/130 (41.54%), Postives = 86/130 (66.15%), Query Frame = 1 
Query:    1 GDVIGGRYKLRADMGQGTFGRVVECWDMKQWRRVAVKIVRKARALAKNYDESVLIEAQILRDVNDREIYDRGGPNDACLCVMMFDHFEHQRHCCLVFECLGPSLHESLMKNGRRGFPLNVIRPIARELLQ 390
            G+ +  RYK+ + MG+GTFG+V+ECWD ++   VA+KIVR      K Y E+ +IE ++L+ +     +D+GG      CV + + F+++ H C+VFE LG SL++ L KN  R FP++++R IAR+LL+
Sbjct:   92 GENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGI----KKYREAAMIEIEVLQQLAK---HDKGGNR----CVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLE 210
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BLAST of mRNA_F-serratus_M_contig1128.1153.1 vs. uniprot
Match: A0A5P1E6X6_ASPOF (Protein kinase domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E6X6_ASPOF)

HSP 1 Score: 105 bits (261), Expect = 4.590e-24
Identity = 52/130 (40.00%), Postives = 85/130 (65.38%), Query Frame = 1 
Query:    1 GDVIGGRYKLRADMGQGTFGRVVECWDMKQWRRVAVKIVRKARALAKNYDESVLIEAQILRDVNDREIYDRGGPNDACLCVMMFDHFEHQRHCCLVFECLGPSLHESLMKNGRRGFPLNVIRPIARELLQ 390
            G+ +  RY++ + MG+GTFG+V+ECWD ++   VA+KIVR      K Y ++ +IE  +L+ +     +DR G      CV + + F+++ H C+VFE LGPSL++ L KN  R FP++++R +AR+LL+
Sbjct:   93 GENLTSRYRIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGI----KKYRDAAMIEVDVLQQLGK---HDRDGSR----CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELARQLLE 211
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BLAST of mRNA_F-serratus_M_contig1128.1153.1 vs. uniprot
Match: A0A835HXW7_9MAGN (Protein kinase domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HXW7_9MAGN)

HSP 1 Score: 105 bits (262), Expect = 4.790e-24
Identity = 55/130 (42.31%), Postives = 83/130 (63.85%), Query Frame = 1 
Query:    1 GDVIGGRYKLRADMGQGTFGRVVECWDMKQWRRVAVKIVRKARALAKNYDESVLIEAQILRDVNDREIYDRGGPNDACLCVMMFDHFEHQRHCCLVFECLGPSLHESLMKNGRRGFPLNVIRPIARELLQ 390
            GD +  RY++ + MG+GTFGRV+ECWD ++   VA+KIVR        Y E+ LIE  +L+ +     YD GG      CV + + F+++ H C+VFE LGPSL++ L KN  R FP++++R + R+LL+
Sbjct:   47 GDNLTHRYRIMSKMGEGTFGRVLECWDNEKKELVAIKIVRSIH----KYREAALIEIDVLQKLCK---YDVGGTR----CVQIQNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLE 165
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BLAST of mRNA_F-serratus_M_contig1128.1153.1 vs. uniprot
Match: UPI0018AE73CA (serine/threonine-protein kinase AFC1-like isoform X1 n=2 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI0018AE73CA)

HSP 1 Score: 104 bits (260), Expect = 6.200e-24
Identity = 53/130 (40.77%), Postives = 84/130 (64.62%), Query Frame = 1 
Query:    1 GDVIGGRYKLRADMGQGTFGRVVECWDMKQWRRVAVKIVRKARALAKNYDESVLIEAQILRDVNDREIYDRGGPNDACLCVMMFDHFEHQRHCCLVFECLGPSLHESLMKNGRRGFPLNVIRPIARELLQ 390
            G+ +  RYK+ + MG+GTFG+V+ECWDM++   VA+KIVR        Y E+ +IE  +L+ +   +I   GG      CV + + F+++ H C+VFE LGPSL++ L KN  R FP++++R + R+LL+
Sbjct:   87 GENLTSRYKILSKMGEGTFGQVLECWDMERRELVAIKIVRSIH----KYREAAMIEIDVLQKLARHDI---GGKR----CVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRDLGRQLLE 205
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BLAST of mRNA_F-serratus_M_contig1128.1153.1 vs. uniprot
Match: A0A6U3ZL48_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3ZL48_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.540e-24
Identity = 54/130 (41.54%), Postives = 75/130 (57.69%), Query Frame = 1 
Query:    1 GDVIGGRYKLRADMGQGTFGRVVECWDMKQWRRVAVKIVRKARALAKNYDESVLIEAQILRDVNDREIYDRGGPNDACLCVMMFDHFEHQRHCCLVFECLGPSLHESLMKNGRRGFPLNVIRPIARELLQ 390
            GD I  RY +R + G GTFGRV+ECWD ++ + VA+K+VR  R     Y +S  IEA ILRDVN         P     CV ++D F+   H CLVFE L  SL++ +  N  + FPLN +    +++L+
Sbjct:   92 GDTIKERYLVRKEAGVGTFGRVLECWDHRKEKTVAIKVVRNIR----KYTDSAAIEADILRDVNKHSRATGASP-----CVALYDDFKFSGHFCLVFESLSDSLYDMIKANDYKPFPLNYVLAFTQQMLE 212
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1128.1153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2A1_9PHAE1.240e-4263.08Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FR38_ECTSI2.770e-3657.69AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinas... [more]
A0A835Z1U5_9STRA2.390e-3352.31Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A0J8B2X2_BETVV3.480e-2643.08Protein kinase domain-containing protein n=8 Tax=C... [more]
A0A0L9TQA5_PHAAN9.160e-2540.77Protein kinase domain-containing protein n=2 Tax=V... [more]
V4SZD0_CITCL2.390e-2441.54Protein kinase domain-containing protein n=16 Tax=... [more]
A0A5P1E6X6_ASPOF4.590e-2440.00Protein kinase domain-containing protein n=2 Tax=A... [more]
A0A835HXW7_9MAGN4.790e-2442.31Protein kinase domain-containing protein n=1 Tax=C... [more]
UPI0018AE73CA6.200e-2440.77serine/threonine-protein kinase AFC1-like isoform ... [more]
A0A6U3ZL48_9STRA8.540e-2441.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1128contigF-serratus_M_contig1128:200021..200834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score116.3
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog161934.XP_010667508.1
Preferred nameAFC2
KEGG koko:K08287
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0034641,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0046483,GO:0046777,GO:0071704,GO:0090304,GO:0140096,GO:1901360,GO:1901564
EggNOG free text desc.serine threonine-protein kinase
EggNOG OGs37JQS@33090,3G8ZF@35493,KOG0667@1,KOG0671@2759
EC2.7.12.1
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929025.7266204-CDS-F-serratus_M_contig1128:200020..2002751622929025.7266204-CDS-F-serratus_M_contig1128:200020..200275Fucus serratus maleCDSF-serratus_M_contig1128 200021..200275 -
1690962672.0674884-CDS-F-serratus_M_contig1128:200020..2002751690962672.0674884-CDS-F-serratus_M_contig1128:200020..200275Fucus serratus maleCDSF-serratus_M_contig1128 200021..200275 -
1622929025.753627-CDS-F-serratus_M_contig1128:200699..2008341622929025.753627-CDS-F-serratus_M_contig1128:200699..200834Fucus serratus maleCDSF-serratus_M_contig1128 200700..200834 -
1690962672.0799577-CDS-F-serratus_M_contig1128:200699..2008341690962672.0799577-CDS-F-serratus_M_contig1128:200699..200834Fucus serratus maleCDSF-serratus_M_contig1128 200700..200834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1128.1153.1prot_F-serratus_M_contig1128.1153.1Fucus serratus malepolypeptideF-serratus_M_contig1128 200021..200834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1128.1153.1

>prot_F-serratus_M_contig1128.1153.1 ID=prot_F-serratus_M_contig1128.1153.1|Name=mRNA_F-serratus_M_contig1128.1153.1|organism=Fucus serratus male|type=polypeptide|length=130bp
GDVIGGRYKLRADMGQGTFGRVVECWDMKQWRRVAVKIVRKARALAKNYD
ESVLIEAQILRDVNDREIYDRGGPNDACLCVMMFDHFEHQRHCCLVFECL
GPSLHESLMKNGRRGFPLNVIRPIARELLQ
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mRNA from alignment at F-serratus_M_contig1128:200021..200834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1128.1153.1 ID=mRNA_F-serratus_M_contig1128.1153.1|Name=mRNA_F-serratus_M_contig1128.1153.1|organism=Fucus serratus male|type=mRNA|length=814bp|location=Sequence derived from alignment at F-serratus_M_contig1128:200021..200834- (Fucus serratus male)
GGAGACGTGATCGGAGGACGCTACAAGTTGCGGGCAGACATGGGTCAAGG
GACTTTCGGCCGCGTCGTGGAATGCTGGGACATGAAGCAATGGCGTCGGG
TGGCCGTCAAGATCGTTCGCAAGGCACGTGCGCTTGTCAAATATTATAGC
TCGTCCGTATTCACGCATCGGGCTTGCCTTGCGTTTCCTACGTTGATGTT
TACACTGGTGGAGTGGTGGCGTGAAGTGGCATGCCTCTCTTTTCTATGTC
TTTTTTTTTTACGGGATATGTTTATTTCTTCATGGTTTACCTGATCTTTT
TACCATCCCTTTATGGGGTTGAAGTTGAATAAATCACGTCGCTCCTCTCT
CAAAAAGAATCATTCTTCTTCAGTCTCAGAAACCAATTATCGTAGTTGTG
TGTGTATGGGGGATGTAGACTATGGCTCGTTGAGATATCTTACATATATT
TGCGAGTTCACACGCTAGTCGGATAGCCTAGTCTGGTTGTCTTCTGTTTT
AGCCAACTCAGTCGCTTCGTGTTTTTTTTAATCGGTCATAACCCTCTTTC
GCATCACAGGCAAAAAACTACGACGAGTCGGTTCTCATTGAAGCCCAGAT
CCTGCGGGACGTGAACGATCGAGAAATATACGATCGAGGCGGCCCGAATG
ATGCTTGCCTTTGCGTCATGATGTTCGATCACTTCGAGCACCAGCGGCAC
TGCTGTCTTGTGTTTGAGTGCCTCGGGCCGTCTCTACATGAGAGTCTTAT
GAAGAACGGCCGGAGGGGATTCCCCCTGAACGTCATTCGGCCGATTGCCC
GTGAGCTCCTCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1128:200021..200834-

>mRNA_F-serratus_M_contig1128.1153.1 ID=mRNA_F-serratus_M_contig1128.1153.1|Name=mRNA_F-serratus_M_contig1128.1153.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig1128:200021..200834- (Fucus serratus male)
GGAGACGTGATCGGAGGACGCTACAAGTTGCGGGCAGACATGGGTCAAGG
GACTTTCGGCCGCGTCGTGGAATGCTGGGACATGAAGCAATGGCGTCGGG
TGGCCGTCAAGATCGTTCGCAAGGCACGTGCGCTTGGAGACGTGATCGGA
GGACGCTACAAGTTGCGGGCAGACATGGGTCAAGGGACTTTCGGCCGCGT
CGTGGAATGCTGGGACATGAAGCAATGGCGTCGGGTGGCCGTCAAGATCG
TTCGCAAGGCACGTGCGCTTGCAAAAAACTACGACGAGTCGGTTCTCATT
GAAGCCCAGATCCTGCGGGACGTGAACGATCGAGAAATATACGATCGAGG
CGGCCCGAATGATGCTTGCCTTTGCGTCATGATGTTCGATCACTTCGAGC
ACCAGCGGCACTGCTGTCTTGTGTTTGAGTGCCTCGGGCCGTCTCTACAT
GAGAGTCTTATGAAGAACGGCCGGAGGGGATTCCCCCTGAACGTCATTCG
GCCGATTGCCCGTGAGCTCCTCCAGGCAAAAAACTACGACGAGTCGGTTC
TCATTGAAGCCCAGATCCTGCGGGACGTGAACGATCGAGAAATATACGAT
CGAGGCGGCCCGAATGATGCTTGCCTTTGCGTCATGATGTTCGATCACTT
CGAGCACCAGCGGCACTGCTGTCTTGTGTTTGAGTGCCTCGGGCCGTCTC
TACATGAGAGTCTTATGAAGAACGGCCGGAGGGGATTCCCCCTGAACGTC
ATTCGGCCGATTGCCCGTGAGCTCCTCCAG
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