mRNA_F-serratus_M_contig1127.1147.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1127.1147.1
Unique NamemRNA_F-serratus_M_contig1127.1147.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1127.1147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1127contigF-serratus_M_contig1127:96211..98217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size563
Cds size561
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1127.1147.1prot_F-serratus_M_contig1127.1147.1Fucus serratus malepolypeptideF-serratus_M_contig1127 96213..98217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929024.7103457-CDS-F-serratus_M_contig1127:96212..963281622929024.7103457-CDS-F-serratus_M_contig1127:96212..96328Fucus serratus maleCDSF-serratus_M_contig1127 96213..96328 -
1690962671.5872674-CDS-F-serratus_M_contig1127:96212..963281690962671.5872674-CDS-F-serratus_M_contig1127:96212..96328Fucus serratus maleCDSF-serratus_M_contig1127 96213..96328 -
1622929024.726947-CDS-F-serratus_M_contig1127:96469..965491622929024.726947-CDS-F-serratus_M_contig1127:96469..96549Fucus serratus maleCDSF-serratus_M_contig1127 96470..96549 -
1690962671.5995567-CDS-F-serratus_M_contig1127:96469..965491690962671.5995567-CDS-F-serratus_M_contig1127:96469..96549Fucus serratus maleCDSF-serratus_M_contig1127 96470..96549 -
1622929024.7433891-CDS-F-serratus_M_contig1127:96825..968991622929024.7433891-CDS-F-serratus_M_contig1127:96825..96899Fucus serratus maleCDSF-serratus_M_contig1127 96826..96899 -
1690962671.6085486-CDS-F-serratus_M_contig1127:96825..968991690962671.6085486-CDS-F-serratus_M_contig1127:96825..96899Fucus serratus maleCDSF-serratus_M_contig1127 96826..96899 -
1622929024.7580683-CDS-F-serratus_M_contig1127:97470..975481622929024.7580683-CDS-F-serratus_M_contig1127:97470..97548Fucus serratus maleCDSF-serratus_M_contig1127 97471..97548 -
1690962671.6239076-CDS-F-serratus_M_contig1127:97470..975481690962671.6239076-CDS-F-serratus_M_contig1127:97470..97548Fucus serratus maleCDSF-serratus_M_contig1127 97471..97548 -
1622929024.7683175-CDS-F-serratus_M_contig1127:97755..978571622929024.7683175-CDS-F-serratus_M_contig1127:97755..97857Fucus serratus maleCDSF-serratus_M_contig1127 97756..97857 -
1690962671.6378734-CDS-F-serratus_M_contig1127:97755..978571690962671.6378734-CDS-F-serratus_M_contig1127:97755..97857Fucus serratus maleCDSF-serratus_M_contig1127 97756..97857 -
1622929024.7821739-CDS-F-serratus_M_contig1127:98106..982171622929024.7821739-CDS-F-serratus_M_contig1127:98106..98217Fucus serratus maleCDSF-serratus_M_contig1127 98107..98217 -
1690962671.6471474-CDS-F-serratus_M_contig1127:98106..982171690962671.6471474-CDS-F-serratus_M_contig1127:98106..98217Fucus serratus maleCDSF-serratus_M_contig1127 98107..98217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1127.1147.1

>prot_F-serratus_M_contig1127.1147.1 ID=prot_F-serratus_M_contig1127.1147.1|Name=mRNA_F-serratus_M_contig1127.1147.1|organism=Fucus serratus male|type=polypeptide|length=187bp
QRPVIDSHTQALGLKELPSLKAWCGELDIVQECLCGGTFRTRKDWFRVLT
VPLMDEVESITSVSLVKLLEKRFVEEVSLCGRLCGQCEEGTIRSKEQAPQ
RTMVSLAPQKLFVQLMRMSWGAGAGCKVKTLVNFPEVLDISLYSGEPGVY
DLDGVIHHVETGASRDLASTSYRGHFLTFVRTGGQCW
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mRNA from alignment at F-serratus_M_contig1127:96211..98217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1127.1147.1 ID=mRNA_F-serratus_M_contig1127.1147.1|Name=mRNA_F-serratus_M_contig1127.1147.1|organism=Fucus serratus male|type=mRNA|length=2007bp|location=Sequence derived from alignment at F-serratus_M_contig1127:96211..98217- (Fucus serratus male)
CAGCGACCTGTAATCGACTCTCATACTCAGGCACTCGGCCTCAAGGAGCT
TCCCTCCCTGAAGGCCTGGTGTGGCGAGCTGGACATCGTCCAGGAGTGTC
TATGCGGCGGAGTGAGTGACTCAATAATGCCACAACCTCTAATCGAGCAC
CTGAACTTGGCCGTGCGCGAAGGCCGAAAAGTCGATCGAGCTTACCTTTG
TTCAACGGAAACGTTGAGTCTAATCGTGACAGATCGATAGGATAGGACGT
TATATGCGAATGGCTTTAGCTCTTGAGCAGATTGATAACTAATTGCTCTG
ATCGCTGTGTAACCGTCGTGGATCTTACTATTAATAATGTACTGTTCTGC
CGTAACGAAGACATTCCGAACCAGAAAAGACTGGTTTCGGGTTCTGACGG
TGCCCCTCATGGACGAGGTCGAGTCCATCACGAGCGTCTCCCTCGTTAAG
CTCCTGGAAAAGGTACGATGCAGCAAGCAAGCATTTTGTATTCCGTTGCT
GCAACCCGCCGCTCTTGCTTTTATGAGGCGGTCGTAATCGGGACAAAGTT
TACTACTTCGAGGCAACTGGAATCGGAACGAAACGCCTTGACATGCGCGC
TGACCGCGAACCCGTGAACCTGTCTCTATATCTGTCTGATGATACGATTT
GACTGCTGTTGACGTGCAGCGCTTTGTCGAAGAAGTGTCCTTGTGCGGAC
GTCTGTGTGGACAGTGCGAGGAAGGGACCATTCGCTCGAAAGAGCAGGTG
AGCTTCGGTACATCTGTGTATACGGTAGATGTTATCCACTCACTGTTTAT
TTTAACAGCTCTGCACCGTGAAAGGTCAGGCAAGGGAGTTCTTTAGGATT
CTTGGCTTCTTGAGGACACCATTAACACAGTATTCTAGTAAAAATCAATC
GCAATGATCAAGTGTCCAGGCCAGACGCATTTGGCACCGTTCTTACGTAT
CGAGCGAGCCATTATCCCACCCTGGCCGAGAGATGGCACGGCACCGTCAA
GTGGAAGCATGAGTTGGAATTGGTTCAAAGAAACACTACTGTACCAGGAC
ACGCCACTCTTAAATCGAGGGAATTGAATCTGCGGGGTGTTTGGCGTTTC
ACAGGAGCTCTGTTCTTGATTCAGTATTACAGTATTACTAGCTCTTACCT
GGTACGGTACCGGTAACATAGACGGTAGAGCTTCTGTATCTACTGCTGTA
TCGTATGTGGTACTCGTTGAGATTTGTTGTACAGAACGCTGGACTCACCA
GTGCCACCATTCCCGAATAAATTTCCGTTAATCGCCGCCGCTGCTGTTGG
CATCATTTTCCCCACAAGGCGCCTCAACGTACGATGGTTTCGCTGGCGCC
GCAGAAGCTTTTTGTTCAACTCATGCGGATGTCGTGGGGAGCGTAAGTGT
GGAGCAAGGCATGCGGGTGAAAGCCGTCTGTTGCGGGTGCTGCTATTAAT
AGTTCTGTTGTTCGGCACGAGGTGCTGGAGTATATGGAGTATACCAAGCC
CTCGGCGCATGCAAACGTAGCGTTGTTGTCCATCATGTACGAGCGTAGAG
TACATGATTGTTGCCATATTTCACATTTTAATGCCGTACGAGCACTGCTC
TAAATAGCTATACTCTCTGAAGCTCTAGACTCGAAAGTCCCGTATACTAC
TCCGTGTCATGTCTACAGGGGGGCGGGCTGTAAGGTGAAGACACTCGTCA
ACTTCCCGGAGGTGCTCGACATTTCCCTCTACAGCGGGGAGCCTGGAGGT
ACGGTACAGTCTGGTTCGAAGCAACATTCTTCCGTCCGTCCGATCGTAAG
CTTGTTTTAGGCAGTGAAAGTCCAGTATAAAAAGCAGTCTAGACTGAAGC
AATCCATGCTCTCGCCACCCCAACCCCGACCCTCATCAGTGTACGACCTC
GACGGAGTCATCCACCACGTCGAGACTGGTGCCAGCCGCGATCTGGCGTC
CACCAGTTACCGAGGGCACTTCCTGACGTTCGTCCGCACGGGAGGCCAGT
GCTGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1127:96211..98217-

>mRNA_F-serratus_M_contig1127.1147.1 ID=mRNA_F-serratus_M_contig1127.1147.1|Name=mRNA_F-serratus_M_contig1127.1147.1|organism=Fucus serratus male|type=CDS|length=1122bp|location=Sequence derived from alignment at F-serratus_M_contig1127:96211..98217- (Fucus serratus male)
CAGCGACCTGTAATCGACTCTCATACTCAGGCACTCGGCCTCAAGGAGCT
TCCCTCCCTGAAGGCCTGGTGTGGCGAGCTGGACATCGTCCAGGAGTGTC
TATGCGGCGGACAGCGACCTGTAATCGACTCTCATACTCAGGCACTCGGC
CTCAAGGAGCTTCCCTCCCTGAAGGCCTGGTGTGGCGAGCTGGACATCGT
CCAGGAGTGTCTATGCGGCGGAACATTCCGAACCAGAAAAGACTGGTTTC
GGGTTCTGACGGTGCCCCTCATGGACGAGGTCGAGTCCATCACGAGCGTC
TCCCTCGTTAAGCTCCTGGAAAAGACATTCCGAACCAGAAAAGACTGGTT
TCGGGTTCTGACGGTGCCCCTCATGGACGAGGTCGAGTCCATCACGAGCG
TCTCCCTCGTTAAGCTCCTGGAAAAGCGCTTTGTCGAAGAAGTGTCCTTG
TGCGGACGTCTGTGTGGACAGTGCGAGGAAGGGACCATTCGCTCGAAAGA
GCAGCGCTTTGTCGAAGAAGTGTCCTTGTGCGGACGTCTGTGTGGACAGT
GCGAGGAAGGGACCATTCGCTCGAAAGAGCAGGCGCCTCAACGTACGATG
GTTTCGCTGGCGCCGCAGAAGCTTTTTGTTCAACTCATGCGGATGTCGTG
GGGAGCGCGCCTCAACGTACGATGGTTTCGCTGGCGCCGCAGAAGCTTTT
TGTTCAACTCATGCGGATGTCGTGGGGAGCGGGGGCGGGCTGTAAGGTGA
AGACACTCGTCAACTTCCCGGAGGTGCTCGACATTTCCCTCTACAGCGGG
GAGCCTGGAGGGGGGCGGGCTGTAAGGTGAAGACACTCGTCAACTTCCCG
GAGGTGCTCGACATTTCCCTCTACAGCGGGGAGCCTGGAGTGTACGACCT
CGACGGAGTCATCCACCACGTCGAGACTGGTGCCAGCCGCGATCTGGCGT
CCACCAGTTACCGAGGGCACTTCCTGACGTTCGTCCGCACGGGAGGCCAG
TGCTGGTGTACGACCTCGACGGAGTCATCCACCACGTCGAGACTGGTGCC
AGCCGCGATCTGGCGTCCACCAGTTACCGAGGGCACTTCCTGACGTTCGT
CCGCACGGGAGGCCAGTGCTGG
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