mRNA_F-serratus_M_contig1127.1146.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1127.1146.1
Unique NamemRNA_F-serratus_M_contig1127.1146.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1127.1146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1127contigF-serratus_M_contig1127:60034..62040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size563
Cds size561
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1127.1146.1prot_F-serratus_M_contig1127.1146.1Fucus serratus malepolypeptideF-serratus_M_contig1127 60036..62040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929024.5045485-CDS-F-serratus_M_contig1127:60035..601511622929024.5045485-CDS-F-serratus_M_contig1127:60035..60151Fucus serratus maleCDSF-serratus_M_contig1127 60036..60151 -
1690962671.5269868-CDS-F-serratus_M_contig1127:60035..601511690962671.5269868-CDS-F-serratus_M_contig1127:60035..60151Fucus serratus maleCDSF-serratus_M_contig1127 60036..60151 -
1622929024.5268402-CDS-F-serratus_M_contig1127:60292..603721622929024.5268402-CDS-F-serratus_M_contig1127:60292..60372Fucus serratus maleCDSF-serratus_M_contig1127 60293..60372 -
1690962671.5362065-CDS-F-serratus_M_contig1127:60292..603721690962671.5362065-CDS-F-serratus_M_contig1127:60292..60372Fucus serratus maleCDSF-serratus_M_contig1127 60293..60372 -
1622929024.5384672-CDS-F-serratus_M_contig1127:60648..607221622929024.5384672-CDS-F-serratus_M_contig1127:60648..60722Fucus serratus maleCDSF-serratus_M_contig1127 60649..60722 -
1690962671.545159-CDS-F-serratus_M_contig1127:60648..607221690962671.545159-CDS-F-serratus_M_contig1127:60648..60722Fucus serratus maleCDSF-serratus_M_contig1127 60649..60722 -
1622929024.5490687-CDS-F-serratus_M_contig1127:61293..613711622929024.5490687-CDS-F-serratus_M_contig1127:61293..61371Fucus serratus maleCDSF-serratus_M_contig1127 61294..61371 -
1690962671.5551171-CDS-F-serratus_M_contig1127:61293..613711690962671.5551171-CDS-F-serratus_M_contig1127:61293..61371Fucus serratus maleCDSF-serratus_M_contig1127 61294..61371 -
1622929024.5611446-CDS-F-serratus_M_contig1127:61578..616801622929024.5611446-CDS-F-serratus_M_contig1127:61578..61680Fucus serratus maleCDSF-serratus_M_contig1127 61579..61680 -
1690962671.5652006-CDS-F-serratus_M_contig1127:61578..616801690962671.5652006-CDS-F-serratus_M_contig1127:61578..61680Fucus serratus maleCDSF-serratus_M_contig1127 61579..61680 -
1622929024.572925-CDS-F-serratus_M_contig1127:61929..620401622929024.572925-CDS-F-serratus_M_contig1127:61929..62040Fucus serratus maleCDSF-serratus_M_contig1127 61930..62040 -
1690962671.5750628-CDS-F-serratus_M_contig1127:61929..620401690962671.5750628-CDS-F-serratus_M_contig1127:61929..62040Fucus serratus maleCDSF-serratus_M_contig1127 61930..62040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1127.1146.1

>prot_F-serratus_M_contig1127.1146.1 ID=prot_F-serratus_M_contig1127.1146.1|Name=mRNA_F-serratus_M_contig1127.1146.1|organism=Fucus serratus male|type=polypeptide|length=187bp
QRPVIDSHTQALGLKELPSLKAWCGELDIVQECLCGGTFRTRKDWFRVLT
VPLMDEVESITSVSLVKLLEKRFVEEVSLCGRLCGQCEEGTIRSKEQAPQ
RTMVSLAPQKLFVQLMRMSWGAGAGCKVKTLVNFPEVLDISLYSGEPGVY
DLDGVIHHVETGASRDLASTSYRGHFLTFVRTGGQCW
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mRNA from alignment at F-serratus_M_contig1127:60034..62040-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1127.1146.1 ID=mRNA_F-serratus_M_contig1127.1146.1|Name=mRNA_F-serratus_M_contig1127.1146.1|organism=Fucus serratus male|type=mRNA|length=2007bp|location=Sequence derived from alignment at F-serratus_M_contig1127:60034..62040- (Fucus serratus male)
CAGCGACCTGTAATCGACTCTCATACTCAGGCACTCGGCCTCAAGGAGCT
TCCCTCCCTGAAGGCCTGGTGTGGCGAGCTGGACATCGTCCAGGAGTGTC
TATGCGGCGGAGTGAGTGACTCAATAATGCCACAACCTCTAATCGAGCAC
CTGAACTTGGCCGTGCGCGAAGGCCGAAAAGTCGATCGAGCTTACCTTTG
TTCAACGGAAACGTTGAGTCTAATCGTGACAGATCGATAGGATAGGACGT
TATATGCGAATGGCTTTAGCTCTTGAGCAGATTGATAACTAATTGCTCTG
ATTGCTGTGTAACCGTCGTAGATCTTACTATTAATAATGTACTGTTCTGC
CGTAACGAAGACATTCCGAACCAGAAAAGACTGGTTTCGGGTTCTGACGG
TGCCCCTCATGGACGAGGTCGAGTCCATCACGAGCGTCTCCCTCGTTAAG
CTCCTGGAAAAGGTACGATGCAGCAAGCAAGCATTTTGTATTCCGTTGCT
GCAACCCGCCGCTCTTGCTTTTATGAGGCGGTCGTAATCGGGACAAAGTT
TACTACTTCGAGGCAACTGGAATCGGAACGAAACGCCTTGACATGCGCGC
TGACCGCGAACCCGTGAACCTGTCTCTATATCTGTCTGATGATACGATTT
GACTGCTGTTGACGTGCAGCGCTTTGTCGAAGAAGTGTCCTTGTGCGGAC
GTCTGTGTGGACAGTGCGAGGAAGGGACCATTCGCTCGAAAGAGCAGGTG
AGCTTCGGTACATCTGTGTATACGGTAGATGTTATCCACTTACTGTTTAT
TTTAACAGCTCTGCACCGTGAAAGGTCAGGCAAGGGAGTTCTTTAGGATT
CTTGGCTTCTTGAGGACACCATTAACACAGTATTCTAGTAAAAATCAATC
GCAATGATCAAGTGTCCAGGCCAGACGCATTTGGCACCGTTCTTACGTAT
CGAGCGAGCCATTATCCCACCCTGGCCGAGAGATGGCACGGCACCGTCAA
GTGGAAGCATGAGTTGGAATTGGTTCAAAGAAACACTACTGTACCAGGAC
ACGCCACTCTTAAATCGAGGGAATTGAATCTGCGGGGTGTTTGGCGTTTC
ACAGGAGCTCTGTTCTTGATTCAGTATTACAGTATTACTAGCTCTTACCT
GGTACGGTACCGGTAACATAGACGGTAGAGCTTCTGTATCTACTGCTGTA
TCGTATGTGGTACTCGTTGAGATTTGTTGTACAGAACGCTGGACTCACCA
GTGCCACCATTCCCGAATAAATTTCCGTTAATCGCCGCCGCTGCTGTTGG
CATCATTTTCCCCACAAGGCGCCTCAACGTACGATGGTTTCGCTGGCGCC
GCAGAAGCTTTTTGTTCAACTCATGCGGATGTCGTGGGGAGCGTAAGTGT
GGAGCAAGGCATGCGGGTGAAAGCCGTCTGTTGCGGGTGCTGCTATTAAT
AGTTCTGTTGTTCGGCACGAGGTGCTGGAGTATATGGAGTATACCAAGCC
CTCGGCGCATGCAAACGTAGCGTTGTTGTCCATCATGTACGAGCGTAGAG
TACATGATTGTTGCCATATTTCACATTTTAATGCCGTACGAGCACTGCTC
TAAATAGCTATACTCTCTGAAGCTCTAGACTCGAAAGTCCCGTATACTAC
TCCGTGTCATGTCTACAGGGGGGCGGGCTGTAAGGTGAAGACACTCGTCA
ACTTCCCGGAGGTGCTCGACATTTCCCTCTACAGCGGGGAGCCTGGAGGT
ACGGTACAGTCTGGTTCGAAGCAACATTCTTCCGTCCGTCCGATCGTAAG
CTTGTTTTAGGCAGTGAAAGTCCAGTATAAAAAGCAGTCTAGACTGAAGC
AATCCATGCTCTCGCCACCCCAACCCCGACCCTCATCAGTGTACGACCTC
GACGGAGTCATCCACCACGTCGAGACTGGTGCCAGCCGCGATCTGGCGTC
CACCAGTTACCGAGGGCACTTCCTGACGTTCGTCCGCACGGGAGGCCAGT
GCTGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1127:60034..62040-

>mRNA_F-serratus_M_contig1127.1146.1 ID=mRNA_F-serratus_M_contig1127.1146.1|Name=mRNA_F-serratus_M_contig1127.1146.1|organism=Fucus serratus male|type=CDS|length=1122bp|location=Sequence derived from alignment at F-serratus_M_contig1127:60034..62040- (Fucus serratus male)
CAGCGACCTGTAATCGACTCTCATACTCAGGCACTCGGCCTCAAGGAGCT
TCCCTCCCTGAAGGCCTGGTGTGGCGAGCTGGACATCGTCCAGGAGTGTC
TATGCGGCGGACAGCGACCTGTAATCGACTCTCATACTCAGGCACTCGGC
CTCAAGGAGCTTCCCTCCCTGAAGGCCTGGTGTGGCGAGCTGGACATCGT
CCAGGAGTGTCTATGCGGCGGAACATTCCGAACCAGAAAAGACTGGTTTC
GGGTTCTGACGGTGCCCCTCATGGACGAGGTCGAGTCCATCACGAGCGTC
TCCCTCGTTAAGCTCCTGGAAAAGACATTCCGAACCAGAAAAGACTGGTT
TCGGGTTCTGACGGTGCCCCTCATGGACGAGGTCGAGTCCATCACGAGCG
TCTCCCTCGTTAAGCTCCTGGAAAAGCGCTTTGTCGAAGAAGTGTCCTTG
TGCGGACGTCTGTGTGGACAGTGCGAGGAAGGGACCATTCGCTCGAAAGA
GCAGCGCTTTGTCGAAGAAGTGTCCTTGTGCGGACGTCTGTGTGGACAGT
GCGAGGAAGGGACCATTCGCTCGAAAGAGCAGGCGCCTCAACGTACGATG
GTTTCGCTGGCGCCGCAGAAGCTTTTTGTTCAACTCATGCGGATGTCGTG
GGGAGCGCGCCTCAACGTACGATGGTTTCGCTGGCGCCGCAGAAGCTTTT
TGTTCAACTCATGCGGATGTCGTGGGGAGCGGGGGCGGGCTGTAAGGTGA
AGACACTCGTCAACTTCCCGGAGGTGCTCGACATTTCCCTCTACAGCGGG
GAGCCTGGAGGGGGGCGGGCTGTAAGGTGAAGACACTCGTCAACTTCCCG
GAGGTGCTCGACATTTCCCTCTACAGCGGGGAGCCTGGAGTGTACGACCT
CGACGGAGTCATCCACCACGTCGAGACTGGTGCCAGCCGCGATCTGGCGT
CCACCAGTTACCGAGGGCACTTCCTGACGTTCGTCCGCACGGGAGGCCAG
TGCTGGTGTACGACCTCGACGGAGTCATCCACCACGTCGAGACTGGTGCC
AGCCGCGATCTGGCGTCCACCAGTTACCGAGGGCACTTCCTGACGTTCGT
CCGCACGGGAGGCCAGTGCTGG
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