mRNA_F-serratus_M_contig1122.1119.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1122.1119.1
Unique NamemRNA_F-serratus_M_contig1122.1119.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1122.1119.1 vs. uniprot
Match: D7G872_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G872_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 9.570e-8
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:  302 SILGVLLPPTMFWSEFEIGVIAELGTDLPHVW 397
            S+LGVL+PP+MFW+EFEIG IAE G  LPH+W
Sbjct:  328 SVLGVLVPPSMFWAEFEIGSIAEPGKPLPHIW 359
[Close]
BLAST of mRNA_F-serratus_M_contig1122.1119.1 vs. uniprot
Match: A0A5J4XNN3_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XNN3_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 4.970e-6
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 2 
Query:  302 SILGVLLPPTMFWSEFEIGVIAELGTDLPHVW 397
             ++GVLLPP MFW EFEIG +A   T LPH+W
Sbjct:  330 GVIGVLLPPVMFWGEFEIGTLAAPSTVLPHIW 361
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1122.1119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G872_ECTSI9.570e-871.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A5J4XNN3_9CHLO4.970e-662.50Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1122contigF-serratus_M_contig1122:170..950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size402
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1122.1119.1prot_F-serratus_M_contig1122.1119.1Fucus serratus malepolypeptideF-serratus_M_contig1122 197..893 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.1426828-UTR-F-serratus_M_contig1122:169..1961622929017.1426828-UTR-F-serratus_M_contig1122:169..196Fucus serratus maleUTRF-serratus_M_contig1122 170..196 +
1690962667.6645908-UTR-F-serratus_M_contig1122:169..1961690962667.6645908-UTR-F-serratus_M_contig1122:169..196Fucus serratus maleUTRF-serratus_M_contig1122 170..196 +
1622929017.1892385-UTR-F-serratus_M_contig1122:893..9501622929017.1892385-UTR-F-serratus_M_contig1122:893..950Fucus serratus maleUTRF-serratus_M_contig1122 894..950 +
1690962667.6903453-UTR-F-serratus_M_contig1122:893..9501690962667.6903453-UTR-F-serratus_M_contig1122:893..950Fucus serratus maleUTRF-serratus_M_contig1122 894..950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929017.1571012-CDS-F-serratus_M_contig1122:196..3921622929017.1571012-CDS-F-serratus_M_contig1122:196..392Fucus serratus maleCDSF-serratus_M_contig1122 197..392 +
1690962667.6731043-CDS-F-serratus_M_contig1122:196..3921690962667.6731043-CDS-F-serratus_M_contig1122:196..392Fucus serratus maleCDSF-serratus_M_contig1122 197..392 +
1622929017.1697366-CDS-F-serratus_M_contig1122:771..8931622929017.1697366-CDS-F-serratus_M_contig1122:771..893Fucus serratus maleCDSF-serratus_M_contig1122 772..893 +
1690962667.6815808-CDS-F-serratus_M_contig1122:771..8931690962667.6815808-CDS-F-serratus_M_contig1122:771..893Fucus serratus maleCDSF-serratus_M_contig1122 772..893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1122.1119.1

>prot_F-serratus_M_contig1122.1119.1 ID=prot_F-serratus_M_contig1122.1119.1|Name=mRNA_F-serratus_M_contig1122.1119.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MGMYTFGDCRLLYRRRLASAWQCTVDFKEKHSERSGPFAPDLSTASDVVL
GVLIDHASAVSIFFSRVERIGLGSFETTNRPTVLAALVDFPFNTGRPPAA
YHVLV*
back to top

mRNA from alignment at F-serratus_M_contig1122:170..950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1122.1119.1 ID=mRNA_F-serratus_M_contig1122.1119.1|Name=mRNA_F-serratus_M_contig1122.1119.1|organism=Fucus serratus male|type=mRNA|length=781bp|location=Sequence derived from alignment at F-serratus_M_contig1122:170..950+ (Fucus serratus male)
CTCTTCGCCCTCGAAGTTCTCAACACCATGGGGATGTATACCTTCGGAGA
CTGCCGTCTACTCTATAGGCGCCGGCTGGCATCTGCTTGGCAGTGTACCG
TGGACTTCAAGGAGAAGCATTCGGAGAGATCTGGACCTTTCGCGCCTGAT
CTGAGCACCGCCTCCGATGTTGTGCTTGGAGTTTTGATTGACCACGCAAG
CGCTGTCAGCATTTTCTTTTCGCGTAAGTCGGTACCTTTGCTGATTCCGC
CAAGCTACCGATTTTAAGCTACTACCAGCCATACCGCTGTGCACCCATGT
CTCTGTTCGGAGATAAATATGTACACAAATTATGGGATATGGCCCAATTG
TATCAAATTGTTCAGAGGGGTGGGATTTCTGTTCTTATACCGAATAATGA
CTCCGGATGTAAGTTATTCCTCGGCTTAATTTGGGGTGCGATCCTTTCAT
TGCCCATATTATTGCACGCCGCCCTCACAGACGGCCGTTCCCAGTTCCTA
CCGCTTCTTGCCATAAAACCTCCTAATGAATATAGTATAATAATATAATA
TCTGAACTGCCTCTCTGGTCCACCTTCACAGGATCTTTCGTGGGTCGTTG
AGGTGTAGAACGAATCGGGCTTGGCAGTTTCGAGACGACAAACAGACCGA
CCGTTCTGGCGGCGCTAGTGGACTTTCCATTCAATACTGGGCGTCCTCCT
GCCGCCTACCATGTTCTGGTCTGAGTTTGAAATTGGGGTGATCGCCGAGC
TGGGGACGGACCTGCCGCACGTGTGGGCCCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1122:170..950+

>mRNA_F-serratus_M_contig1122.1119.1 ID=mRNA_F-serratus_M_contig1122.1119.1|Name=mRNA_F-serratus_M_contig1122.1119.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig1122:170..950+ (Fucus serratus male)
ATGGGGATGTATACCTTCGGAGACTGCCGTCTACTCTATAGGCGCCGGCT
GGCATCTGCTTGGCAGTGTACCGTGGACTTCAAGGAGAAGCATTCGGAGA
GATCTGGACCTTTCGCGCCTGATCTGAGCACCGCCTCCGATGTTGTGCTT
GGAGTTTTGATTGACCACGCAAGCGCTGTCAGCATTTTCTTTTCGCATGG
GGATGTATACCTTCGGAGACTGCCGTCTACTCTATAGGCGCCGGCTGGCA
TCTGCTTGGCAGTGTACCGTGGACTTCAAGGAGAAGCATTCGGAGAGATC
TGGACCTTTCGCGCCTGATCTGAGCACCGCCTCCGATGTTGTGCTTGGAG
TTTTGATTGACCACGCAAGCGCTGTCAGCATTTTCTTTTCGCGTGTAGAA
CGAATCGGGCTTGGCAGTTTCGAGACGACAAACAGACCGACCGTTCTGGC
GGCGCTAGTGGACTTTCCATTCAATACTGGGCGTCCTCCTGCCGCCTACC
ATGTTCTGGTCTGAGTGTAGAACGAATCGGGCTTGGCAGTTTCGAGACGA
CAAACAGACCGACCGTTCTGGCGGCGCTAGTGGACTTTCCATTCAATACT
GGGCGTCCTCCTGCCGCCTACCATGTTCTGGTCTGA
back to top