mRNA_F-serratus_M_contig112.1106.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig112.1106.1
Unique NamemRNA_F-serratus_M_contig112.1106.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig112.1106.1 vs. uniprot
Match: D7FL45_ECTSI (Plastoquinol--plastocyanin reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL45_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 8.540e-55
Identity = 79/99 (79.80%), Postives = 86/99 (86.87%), Query Frame = 1 
Query:    1 LADILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICRCHGSQYDATGKVVRGPAPLSLALAHVEETGGKVILKEWKEADFRTGDSPWW 297
            LA+ ++GDATYL VT D K+QDYGI AVCTHLGCVVPWN AENKF+C CHGSQYD TGKV+RGPAPLSLAL+HVEE  GKVI KEWKE DFRTGD PWW
Sbjct:  126 LAEGIKGDATYLVVTEDKKVQDYGIVAVCTHLGCVVPWNKAENKFMCPCHGSQYDQTGKVIRGPAPLSLALSHVEEVDGKVIFKEWKETDFRTGDKPWW 224
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BLAST of mRNA_F-serratus_M_contig112.1106.1 vs. uniprot
Match: UCRI_SYNE7 (Cytochrome b6-f complex iron-sulfur subunit n=3 Tax=Synechococcus elongatus TaxID=32046 RepID=UCRI_SYNE7)

HSP 1 Score: 164 bits (415), Expect = 8.990e-50
Identity = 75/96 (78.12%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:   13 LQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICRCHGSQYDATGKVVRGPAPLSLALAHVEETGGKVILKEWKEADFRTGDSPWWA 300
            L+GD TYL V S   I DYGINAVCTHLGCVVPWNA+ENKF C CHGSQYDATGKVVRGPAPLSLALAHV  T  KV L  W E DFRTGD+PWWA
Sbjct:   84 LKGDPTYLVVESSEAIGDYGINAVCTHLGCVVPWNASENKFKCPCHGSQYDATGKVVRGPAPLSLALAHVSVTDDKVFLSPWTETDFRTGDNPWWA 179
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BLAST of mRNA_F-serratus_M_contig112.1106.1 vs. uniprot
Match: A0A846A2U6_9CYAN (Cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Leptolyngbya sp. SIO4C5 TaxID=2607774 RepID=A0A846A2U6_9CYAN)

HSP 1 Score: 164 bits (415), Expect = 9.270e-50
Identity = 74/101 (73.27%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:    1 LADILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICRCHGSQYDATGKVVRGPAPLSLALAHVEET-GGKVILKEWKEADFRTGDSPWWA 300
            LA  L+GD TYL VT    ++DYGIN++CTHLGCVVPWNA+ENKFIC CHGSQYDATGKVVRGPAPLSLALAH + T   KV+L  W E DFRTGD+PWWA
Sbjct:   80 LAQGLKGDPTYLVVTESGSLEDYGINSICTHLGCVVPWNASENKFICPCHGSQYDATGKVVRGPAPLSLALAHADVTEDDKVVLSPWTETDFRTGDNPWWA 180
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BLAST of mRNA_F-serratus_M_contig112.1106.1 vs. uniprot
Match: UPI001A0E73EF (Cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Oscillatoriaceae cyanobacterium M7585_C2015_266 TaxID=2774341 RepID=UPI001A0E73EF)

HSP 1 Score: 161 bits (408), Expect = 1.040e-48
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:    1 LADILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICRCHGSQYDATGKVVRGPAPLSLALAHVEETGGKVILKEWKEADFRTGDSPWWA 300
            LA  L+GD TY+ V S++ I +YGINAVCTHLGCVVPWNA+ENKFIC CHGSQYD TGKVVRGPAPLSLAL HVE    KV L  W E DFRTG+ PWWA
Sbjct:   80 LAQGLKGDPTYIVVESESSIANYGINAVCTHLGCVVPWNASENKFICPCHGSQYDTTGKVVRGPAPLSLALVHVEVVDDKVTLTPWTETDFRTGEDPWWA 179
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BLAST of mRNA_F-serratus_M_contig112.1106.1 vs. uniprot
Match: UPI0016896140 (cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Oscillatoria sp. FACHB-1406 TaxID=2692846 RepID=UPI0016896140)

HSP 1 Score: 161 bits (408), Expect = 1.040e-48
Identity = 71/100 (71.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 LADILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICRCHGSQYDATGKVVRGPAPLSLALAHVEETGGKVILKEWKEADFRTGDSPWWA 300
            LA  L+GDATY+ VT   +I +YGINAVCTHLGCVVPWNA+ENKF+C CHGSQY+A GKVVRGPAPLSLALAH   T  K++  EW E DFRTG++PWWA
Sbjct:   80 LAQGLKGDATYIVVTDSKEIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDDKLVFSEWTETDFRTGENPWWA 179
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BLAST of mRNA_F-serratus_M_contig112.1106.1 vs. uniprot
Match: A0A8J5X155_DIALT (Rieske domain-containing protein n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X155_DIALT)

HSP 1 Score: 162 bits (411), Expect = 1.180e-48
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    1 LADILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICRCHGSQYDATGKVVRGPAPLSLALAHVEETGGKVILKEWKEADFRTGDSPWW 297
            L + L+GDATYL VT D KI+ Y +NAVCTHLGCVVPWNAA+ KFIC CHGSQYD+TGKVVRGPAPLSLALAHV    GKV+L  W E DFRTG +PWW
Sbjct:  119 LVEGLKGDATYLIVTPDKKIETYALNAVCTHLGCVVPWNAAQQKFICPCHGSQYDSTGKVVRGPAPLSLALAHVNGDSGKVVLSTWTETDFRTGLAPWW 217
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BLAST of mRNA_F-serratus_M_contig112.1106.1 vs. uniprot
Match: Q00GM2_KARBR (Plastid cytochrome b6-f complex iron-sulfur subunit protein n=1 Tax=Karenia brevis TaxID=156230 RepID=Q00GM2_KARBR)

HSP 1 Score: 162 bits (409), Expect = 1.350e-48
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:   13 LQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICRCHGSQYDATGKVVRGPAPLSLALAHVEETG-GKVILKEWKEADFRTGDSPWW 297
            ++GDATYL VT D KI+DY +NAVCTHLGCVVPWN A+NKF+C CHGSQYD TGKVVRGPAPLSLALAHV ++G GKV L  W E DFRTG  PWW
Sbjct:  102 IRGDATYLIVTKDKKIEDYALNAVCTHLGCVVPWNRAQNKFMCPCHGSQYDTTGKVVRGPAPLSLALAHVTDSGNGKVTLTPWTEQDFRTGQDPWW 197
[Close]
BLAST of mRNA_F-serratus_M_contig112.1106.1 vs. uniprot
Match: A0A6I5NWI2_9CYAN (Cytochrome b6-f complex iron-sulfur subunit n=1 Tax=Leptolyngbya sp. SIO4C1 TaxID=2607770 RepID=A0A6I5NWI2_9CYAN)

HSP 1 Score: 161 bits (407), Expect = 1.520e-48
Identity = 72/97 (74.23%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:   13 LQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICRCHGSQYDATGKVVRGPAPLSLALAHVEET-GGKVILKEWKEADFRTGDSPWWA 300
            L+GD TYL VT    + DYGIN+VCTHLGCVVPWN  ENKFIC CHGSQYDATGKVVRGPAPLSLALAH E+T  GKV+L  W E DFRTG +PWW+
Sbjct:   84 LKGDPTYLVVTESGSLGDYGINSVCTHLGCVVPWNGGENKFICPCHGSQYDATGKVVRGPAPLSLALAHAEQTEDGKVVLSPWTETDFRTGAAPWWS 180
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BLAST of mRNA_F-serratus_M_contig112.1106.1 vs. uniprot
Match: A0A7S2V1Z6_9STRA (Plastoquinol--plastocyanin reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Z6_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.860e-48
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 1 
Query:   13 LQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICRCHGSQYDATGKVVRGPAPLSLALAHVEETGGKVILKEWKEADFRTGDSPWW 297
            L+GDATYL VT +N I+ YG+NAVCTHLGCVVPWN A NKFIC CHGSQYD+TGKVVRGPAPLSLALAHVE   GK++ + W E DFRTG  PWW
Sbjct:  177 LKGDATYLIVTEENAIESYGLNAVCTHLGCVVPWNKAANKFICPCHGSQYDSTGKVVRGPAPLSLALAHVENDDGKIVFETWTEKDFRTGLDPWW 271
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BLAST of mRNA_F-serratus_M_contig112.1106.1 vs. uniprot
Match: A0A0C1YD37_9CYAN (Cytochrome b6-f complex iron-sulfur subunit n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A0C1YD37_9CYAN)

HSP 1 Score: 160 bits (404), Expect = 4.350e-48
Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:   13 LQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICRCHGSQYDATGKVVRGPAPLSLALAHVEET-GGKVILKEWKEADFRTGDSPWWA 300
            L+GD TYL VT D  ++ YGIN+VCTHLGCVVPWNA+ENKF+C CHGSQYDATGKVVRGPAPLSLALAH + T   KV L +W E DFRTG+SPWWA
Sbjct:   84 LKGDPTYLVVTEDGNLEKYGINSVCTHLGCVVPWNASENKFMCPCHGSQYDATGKVVRGPAPLSLALAHADITEDDKVSLTDWTETDFRTGESPWWA 180
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig112.1106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL45_ECTSI8.540e-5579.80Plastoquinol--plastocyanin reductase n=2 Tax=Ectoc... [more]
UCRI_SYNE78.990e-5078.13Cytochrome b6-f complex iron-sulfur subunit n=3 Ta... [more]
A0A846A2U6_9CYAN9.270e-5073.27Cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
UPI001A0E73EF1.040e-4873.00Cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
UPI00168961401.040e-4871.00cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
A0A8J5X155_DIALT1.180e-4873.74Rieske domain-containing protein n=3 Tax=Diacronem... [more]
Q00GM2_KARBR1.350e-4875.00Plastid cytochrome b6-f complex iron-sulfur subuni... [more]
A0A6I5NWI2_9CYAN1.520e-4874.23Cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
A0A7S2V1Z6_9STRA3.860e-4874.74Plastoquinol--plastocyanin reductase n=1 Tax=Fibro... [more]
A0A0C1YD37_9CYAN4.350e-4874.23Cytochrome b6-f complex iron-sulfur subunit n=4 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig112contigF-serratus_M_contig112:25418..26433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue4.6e-43
Seed eggNOG ortholog2880.D7FL45
Preferred namePETC
KEGG rclassRC01002
KEGG koko:K02636
KEGG ReactionR03817,R08409
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009055,GO:0009314,GO:0009416,GO:0009507,GO:0009512,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009767,GO:0009941,GO:0009987,GO:0010196,GO:0015979,GO:0016020,GO:0016491,GO:0019684,GO:0022900,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046028,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0055114,GO:0070069,GO:0071944,GO:0080167,GO:0098542,GO:1990066
EggNOG free text desc.oxidoreductase activity, acting on diphenols and related substances as donors
EggNOG OGsCOG0723@1,KOG1671@2759
EC1.10.9.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Exons3
Model size303
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig112.1106.1prot_F-serratus_M_contig112.1106.1Fucus serratus malepolypeptideF-serratus_M_contig112 25418..26433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929015.3577592-CDS-F-serratus_M_contig112:25417..255941622929015.3577592-CDS-F-serratus_M_contig112:25417..25594Fucus serratus maleCDSF-serratus_M_contig112 25418..25594 +
1690962666.6730165-CDS-F-serratus_M_contig112:25417..255941690962666.6730165-CDS-F-serratus_M_contig112:25417..25594Fucus serratus maleCDSF-serratus_M_contig112 25418..25594 +
1622929015.3700936-CDS-F-serratus_M_contig112:25945..260251622929015.3700936-CDS-F-serratus_M_contig112:25945..26025Fucus serratus maleCDSF-serratus_M_contig112 25946..26025 +
1690962666.6859891-CDS-F-serratus_M_contig112:25945..260251690962666.6859891-CDS-F-serratus_M_contig112:25945..26025Fucus serratus maleCDSF-serratus_M_contig112 25946..26025 +
1622929015.3823605-CDS-F-serratus_M_contig112:26387..264331622929015.3823605-CDS-F-serratus_M_contig112:26387..26433Fucus serratus maleCDSF-serratus_M_contig112 26388..26433 +
1690962666.6964052-CDS-F-serratus_M_contig112:26387..264331690962666.6964052-CDS-F-serratus_M_contig112:26387..26433Fucus serratus maleCDSF-serratus_M_contig112 26388..26433 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig112.1106.1

>prot_F-serratus_M_contig112.1106.1 ID=prot_F-serratus_M_contig112.1106.1|Name=mRNA_F-serratus_M_contig112.1106.1|organism=Fucus serratus male|type=polypeptide|length=101bp
LADILQGDATYLSVTSDNKIQDYGINAVCTHLGCVVPWNAAENKFICRCH
GSQYDATGKVVRGPAPLSLALAHVEETGGKVILKEWKEADFRTGDSPWWA
*
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mRNA from alignment at F-serratus_M_contig112:25418..26433+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig112.1106.1 ID=mRNA_F-serratus_M_contig112.1106.1|Name=mRNA_F-serratus_M_contig112.1106.1|organism=Fucus serratus male|type=mRNA|length=1016bp|location=Sequence derived from alignment at F-serratus_M_contig112:25418..26433+ (Fucus serratus male)
CTTGCTGATATCCTCCAGGGCGACGCTACCTACCTCTCGGTAACGAGTGA
CAATAAAATTCAAGACTACGGCATCAACGCCGTCTGCACGCACCTTGGCT
GCGTTGTGCCTTGGAACGCAGCGGAAAACAAGTTTATCTGCCGTTGTCAC
GGCTCCCAATATGACGCCACCGGCAAGGTGATCATACACACCACAATTAT
TATACGTTTTGGGACAGCAACTGCACGCTTGTTATTGTCGGCAGTTGAAC
CTTTGAGGGTATTGATATTACATTTGTCTCTCTCCTTTCTCAAGTGTCAA
ACCTCTTTTCAACGCAATTTTAATAGAGTCGGGGGTGGGGGGCGCGCATC
GGCTGAACCTTTTTCGCGTATATTGTGGGTAAGATATTATATGTTTCCTT
TTCCTCCACAAGGGCGGCAAGCTCTGTCTTTGAGTTCTGTGCGTCTATGA
TCTCGCCGGTGTGTTTCGTTCGATGCGAGATACTCAAACCACACTGTTTT
CTGCCGTTTCAATTTTGTGTCCCACAAGGTGGTGAGGGGTCCGGCACCGC
TCTCGTTAGCTCTCGCGCACGTGGAAGAAACCGGCGGCAAGGTTATTTTG
AAGGAGTGGTGAGTGGTTAGTAGCACGTTTTTGTCATTAATATTACCGTA
CCGCCAGGTTTGATGGACGATACCAATTTCTGGTACTTGTGTGATTGGGC
ATTCGTCTTGGAGCTGCCCGCACCCGATCCAGCATCCGCGAGGATAGTAA
AGTGTACAATAATACATGTGTTATATAAGACACTGAAAACCTCGAGCTAA
AACTATAGGACAAACAAAAACGACGCTCGCGGTCCCGCGCATGCGCGCGC
CTACCTACGCAGCATCCGAATAAAATGAAGTGCCAGTATTCCGCTCGAGG
TGGCTTGCCCGATCGTTGTGTACCCGGCTTTTCGTCCGATGTTGTCTGCC
GTCTACCTATTTCCTCACAGGAAGGAAGCAGACTTCCGCACCGGGGATTC
ACCGTGGTGGGCATAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig112:25418..26433+

>mRNA_F-serratus_M_contig112.1106.1 ID=mRNA_F-serratus_M_contig112.1106.1|Name=mRNA_F-serratus_M_contig112.1106.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig112:25418..26433+ (Fucus serratus male)
CTTGCTGATATCCTCCAGGGCGACGCTACCTACCTCTCGGTAACGAGTGA
CAATAAAATTCAAGACTACGGCATCAACGCCGTCTGCACGCACCTTGGCT
GCGTTGTGCCTTGGAACGCAGCGGAAAACAAGTTTATCTGCCGTTGTCAC
GGCTCCCAATATGACGCCACCGGCAAGCTTGCTGATATCCTCCAGGGCGA
CGCTACCTACCTCTCGGTAACGAGTGACAATAAAATTCAAGACTACGGCA
TCAACGCCGTCTGCACGCACCTTGGCTGCGTTGTGCCTTGGAACGCAGCG
GAAAACAAGTTTATCTGCCGTTGTCACGGCTCCCAATATGACGCCACCGG
CAAGGTGGTGAGGGGTCCGGCACCGCTCTCGTTAGCTCTCGCGCACGTGG
AAGAAACCGGCGGCAAGGTTATTTTGAAGGAGTGGTGGTGAGGGGTCCGG
CACCGCTCTCGTTAGCTCTCGCGCACGTGGAAGAAACCGGCGGCAAGGTT
ATTTTGAAGGAGTGGAAGGAAGCAGACTTCCGCACCGGGGATTCACCGTG
GTGGGCATAGGAAGGAAGCAGACTTCCGCACCGGGGATTCACCGTGGTGG
GCATAG
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