prot_F-serratus_M_contig111.1050.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig111.1050.1
Unique Nameprot_F-serratus_M_contig111.1050.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length384
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig111.1050.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 25..59
e-value: 1.7E-7
score: 29.0
coord: 61..94
e-value: 5.8E-6
score: 24.1
coord: 130..164
e-value: 7.7E-7
score: 26.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 22..69
e-value: 7.6E-12
score: 45.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 131..160
e-value: 1.5E-4
score: 21.8
coord: 96..124
e-value: 0.42
score: 11.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 23..57
score: 11.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 163..197
score: 6.467
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..21
score: 5.985
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 128..162
score: 10.885
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 93..127
score: 8.846
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 58..92
score: 11.312
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 268..305
score: 6.171
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 306..340
score: 7.541
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..108
e-value: 4.9E-27
score: 96.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 233..378
e-value: 5.4E-12
score: 47.7
coord: 109..228
e-value: 1.4E-16
score: 62.7
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 124..208
coord: 1..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig111contigF-serratus_M_contig111:755266..761285 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig111.1050.1mRNA_F-serratus_M_contig111.1050.1Fucus serratus malemRNAF-serratus_M_contig111 755186..761325 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig111.1050.1 ID=prot_F-serratus_M_contig111.1050.1|Name=mRNA_F-serratus_M_contig111.1050.1|organism=Fucus serratus male|type=polypeptide|length=384bp
MGSWKECLAMLDEMDEAGVVVKDHVVYNTLVTSLAKAEQFDEVSKILKRM
RSSRLEPDVKTYTAMLTGCKRSADWTRAEAILADMRAAGIEPNSRTCHAM
LKIYGDAGKADRAVALFQAWDEQGVVMDHFCFNAVIGAVLRNGWPRKALE
LFRLLESRGIEPDEAILGLALNAAEQTGEAELARRLVEGWKARGHVPGLQ
VYMWAIRACGTDSNATGRISNSERVNVEPPGTASGAHQPEGISASEAALQ
RARYIFNEAREHYPGPEGRRLYASFLMACARHGSKEGADAARGLLAEMRS
CSVKLDHAALAAAASALAKGGAWEEAVQVLQRGAALGFFPDGNACEDVRE
EAGAQGQLDRANELLAAARVASPLTALSLSQTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf