mRNA_F-serratus_M_contig1108.1013.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1108.1013.1
Unique NamemRNA_F-serratus_M_contig1108.1013.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1108.1013.1 vs. uniprot
Match: D8LHX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX8_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.150e-34
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 3 
Query:  255 CATCGVVKQIAEFSRNQLARHGRQVCQNCLAGPGPPAAPPTRVAPAAGEGHVRCVACCQLKPTSSFGINQLRRRAGIERCMACVESDKGSL 527
            C  CGV K  +E+SRNQLAR  R+VCQ CL   G  AAPP+RVAPAAGEG VRCVACCQ+K TSSFGINQLRRRAGIERCM CVE D GS+
Sbjct:   12 CTVCGVRKPASEYSRNQLARSSREVCQVCLMSDGTVAAPPSRVAPAAGEGVVRCVACCQVKTTSSFGINQLRRRAGIERCMLCVEKDLGSV 102
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1108.1013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHX8_ECTSI1.150e-3473.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1108contigF-serratus_M_contig1108:188226..190337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionStc1 domain
Ec32 orthologEc-18_000880.1
Exons2
Model size1403
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1108.1013.1prot_F-serratus_M_contig1108.1013.1Fucus serratus malepolypeptideF-serratus_M_contig1108 188985..190137 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.430979-UTR-F-serratus_M_contig1108:188225..1889841622928987.430979-UTR-F-serratus_M_contig1108:188225..188984Fucus serratus maleUTRF-serratus_M_contig1108 188226..188984 -
1690962657.6128128-UTR-F-serratus_M_contig1108:188225..1889841690962657.6128128-UTR-F-serratus_M_contig1108:188225..188984Fucus serratus maleUTRF-serratus_M_contig1108 188226..188984 -
1622928987.4737718-UTR-F-serratus_M_contig1108:190137..1903371622928987.4737718-UTR-F-serratus_M_contig1108:190137..190337Fucus serratus maleUTRF-serratus_M_contig1108 190138..190337 -
1690962657.63629-UTR-F-serratus_M_contig1108:190137..1903371690962657.63629-UTR-F-serratus_M_contig1108:190137..190337Fucus serratus maleUTRF-serratus_M_contig1108 190138..190337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.4433362-CDS-F-serratus_M_contig1108:188984..1894221622928987.4433362-CDS-F-serratus_M_contig1108:188984..189422Fucus serratus maleCDSF-serratus_M_contig1108 188985..189422 -
1690962657.6210165-CDS-F-serratus_M_contig1108:188984..1894221690962657.6210165-CDS-F-serratus_M_contig1108:188984..189422Fucus serratus maleCDSF-serratus_M_contig1108 188985..189422 -
1622928987.4598162-CDS-F-serratus_M_contig1108:190131..1901371622928987.4598162-CDS-F-serratus_M_contig1108:190131..190137Fucus serratus maleCDSF-serratus_M_contig1108 190132..190137 -
1690962657.6282942-CDS-F-serratus_M_contig1108:190131..1901371690962657.6282942-CDS-F-serratus_M_contig1108:190131..190137Fucus serratus maleCDSF-serratus_M_contig1108 190132..190137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1108.1013.1

>prot_F-serratus_M_contig1108.1013.1 ID=prot_F-serratus_M_contig1108.1013.1|Name=mRNA_F-serratus_M_contig1108.1013.1|organism=Fucus serratus male|type=polypeptide|length=148bp
MEGAAGYAAAGSGHQTAMCATCGVVKQIAEFSRNQLARHGRQVCQNCLAG
PGPPAAPPTRVAPAAGEGHVRCVACCQLKPTSSFGINQLRRRAGIERCMA
CVESDKGSLVLCTGCGKQKPFTEFSKKQIACKPGSERCKMCIENSSK*
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mRNA from alignment at F-serratus_M_contig1108:188226..190337-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1108.1013.1 ID=mRNA_F-serratus_M_contig1108.1013.1|Name=mRNA_F-serratus_M_contig1108.1013.1|organism=Fucus serratus male|type=mRNA|length=2112bp|location=Sequence derived from alignment at F-serratus_M_contig1108:188226..190337- (Fucus serratus male)
AAAAAGTTTCACAGTGACCAGCGGGCAGGTCAGAAAGACACTCAAGACCT
GGACGTATGATTGCCCTCAGCCCCTTACTCCACAACCGCTCTCCTTGTCA
AACATCGAACTCCTGGGTCGGGCTAGCAACCGCATCCAGTACAGATAATC
AGGCCGCGAAGCAGACTTAGGGCCCAGCATCGAAGAAGTTCTGCAACGCC
ATGGAGGTAAGAATGGTATACTCGAATGGCCGTGGGTTTTGTGCTTCGTC
CATTCTCGCCAAATCGGTCAGAATCGGCCTTTCTGATGTCGATCACAATC
TCACGTCTTGTCGCCTCAATCGGAAATCATACGTCCGTCGCTCAGCCCAA
AATACTTTTTCTTTCTCAAGCGCCAGTTCTTCGCGACGGTACCCGTGAGC
ATGTCGAAATTTCTGGAATCACGGCCCTCGATCAATCATACGGAGTAGTA
CGCGCCCCTCACTCGGTAGAATTGCGCCTGTGAAGCCCCGGATTCGCATG
GCCGATGGGAGCAGTAATAGGAGAACAGGAGTCCTGGACATGTTTCAACT
GTCGCACCAAAACATGACTAGTAGCCAGTATCGATCGATGGTGTCATCAA
GTCTTTCCGTCGAGTCTCAACCGGTCGATGGTTTGAGCAGTAGCGAGCTC
TAGGCATATGCTCCGTTCCGTCATCCCGCATCATATATGCATCTTCGTGC
TCACATCTGCCGCAGCGTTCACGCTTTATGTCTCCAACCTAGACGATAAC
TCGATACTCTGATAAAGGAATATCCTCTCGACAGGGGATGCGTTGACTCT
CGCTTGAGGACCCCTACTCAAAGGTGGGAGAAGAAATGTGTCACAACCCT
CCCCCTCCCCCTCCCCTCCTGTCCAACCGTTCGAATGGACGCCTTGCTCC
TTCTTCGTACCCCAGGGTGCGGCAGGCTATGCCGCCGCAGGGAGTGGTCA
CCAGACGGCTATGTGCGCCACCTGTGGAGTGGTAAAGCAGATCGCCGAGT
TCTCCCGAAACCAGCTCGCAAGACACGGCCGGCAGGTGTGCCAGAACTGC
CTTGCGGGGCCGGGTCCTCCTGCTGCCCCCCCGACTCGTGTGGCGCCGGC
TGCGGGGGAAGGCCATGTTCGGTGCGTGGCTTGCTGCCAGCTAAAGCCAA
CCTCAAGCTTCGGTATAAACCAGCTGCGCCGGCGGGCAGGCATCGAGCGC
TGCATGGCTTGCGTGGAGTCCGACAAGGGGTCTCTGGTGCTCTGCACCGG
GTGCGGCAAGCAGAAGCCGTTCACCGAGTTTTCCAAGAAGCAGATCGCGT
GCAAGCCCGGATCTGAAAGGTGCAAGATGTGCATCGAAAATTCCTCCAAG
TGAGGTATGCTAGCTGGATGACTGAACGTACTCGGATGGAACGTCGGCTA
TCATCCCCTTGATCATGCGATCACATGACTCTTTTGATGCCCTTCGATGC
CCTTTGATGCTTGGAGCGAGAGTGGCGTGAATGGGGCACCTGACCTCTGC
AGCCACCGATTTCGAGAACTGTGGCGGACACTAAACAGTTCAAGCTGGTT
GGGGCCTAGCGCGCTAGGCCGGGAGAATTTGGAGGAATTGGATTTTCCAG
TGCTGCATCAGAAGACGCAGGGGGGGGAGGGAGGATGGCGCCGAACGAGA
GGCAGGGCTGTCTAGGTGGGGTACCTCGTGCCTAAGGATCTAGCTTTAAA
AGGAGGCAGGGTACTATGGAGAAGGGTGTTACGGCGAGGTGGATGGAGAG
CTGTTCACCATACTCTCCCCAGGCATCAACGTTTCTTTTTTATCTCGCCG
TCTCAAGATATGCCGTTGCGGTGAGTCGGAAGATTGGACCGCGCATGCTT
AATGTCTCGATCGAGATATCCCGAATGCGCAAGAACGCAATGCACCCATT
TGAATGCTTGCTTCTCCAATTTTTCTATTTTTTCATTATTTTGTTTTGTT
TTGTGGAGTGACCAGGTGACGACGTTCGATGTGTGGCCCGTGTCAGGCAA
AGAAGATAGGCGTGCATGCGTACGCTTTATTTGAGTCTTGGTTTTAATTT
GGTTTTTGGGATGGGTGGCGGGGGATAGACAGACAATTTCGCTTTCGCTT
TCAGCGTTCGTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1108:188226..190337-

>mRNA_F-serratus_M_contig1108.1013.1 ID=mRNA_F-serratus_M_contig1108.1013.1|Name=mRNA_F-serratus_M_contig1108.1013.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig1108:188226..190337- (Fucus serratus male)
ATGGAGATGGAGGGTGCGGCAGGCTATGCCGCCGCAGGGAGTGGTCACCA
GACGGCTATGTGCGCCACCTGTGGAGTGGTAAAGCAGATCGCCGAGTTCT
CCCGAAACCAGCTCGCAAGACACGGCCGGCAGGTGTGCCAGAACTGCCTT
GCGGGGCCGGGTCCTCCTGCTGCCCCCCCGACTCGTGTGGCGCCGGCTGC
GGGGGAAGGCCATGTTCGGTGCGTGGCTTGCTGCCAGCTAAAGCCAACCT
CAAGCTTCGGTATAAACCAGCTGCGCCGGCGGGCAGGCATCGAGCGCTGC
ATGGCTTGCGTGGAGTCCGACAAGGGGTCTCTGGTGCTCTGCACCGGGTG
CGGCAAGCAGAAGCCGTTCACCGAGTTTTCCAAGAAGCAGATCGCGTGCA
AGCCCGGATCTGAAAGGTGCAAGATGTGCATCGAAAATTCCTCCAAGTGA
GGTGCGGCAGGCTATGCCGCCGCAGGGAGTGGTCACCAGACGGCTATGTG
CGCCACCTGTGGAGTGGTAAAGCAGATCGCCGAGTTCTCCCGAAACCAGC
TCGCAAGACACGGCCGGCAGGTGTGCCAGAACTGCCTTGCGGGGCCGGGT
CCTCCTGCTGCCCCCCCGACTCGTGTGGCGCCGGCTGCGGGGGAAGGCCA
TGTTCGGTGCGTGGCTTGCTGCCAGCTAAAGCCAACCTCAAGCTTCGGTA
TAAACCAGCTGCGCCGGCGGGCAGGCATCGAGCGCTGCATGGCTTGCGTG
GAGTCCGACAAGGGGTCTCTGGTGCTCTGCACCGGGTGCGGCAAGCAGAA
GCCGTTCACCGAGTTTTCCAAGAAGCAGATCGCGTGCAAGCCCGGATCTG
AAAGGTGCAAGATGTGCATCGAAAATTCCTCCAAGTGA
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