mRNA_F-serratus_M_contig1106.991.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1106.991.1
Unique NamemRNA_F-serratus_M_contig1106.991.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Match: D8LRT5_ECTSI (Serine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRT5_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 3.460e-46
Identity = 101/183 (55.19%), Postives = 132/183 (72.13%), Query Frame = 3 
Query:   42 MITRIARIMAAVAFASTRCCSFIHSASRFVRIGGQAGKHSALHSSSHLEQGTTHETQFVQRGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHRVADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVETVNEVADSAEEAFEKVW*LLLNTWYLVLLIHVPN 590
            MIT  AR+MA   FA+TRC SF++  +RF R G  A + +ALHSS+ +EQ TT + + + R NAD  SLD++LI  NP LV+DH+KARR GED+ EAVHR+ DLM++RR+LI  KE AL QR  +SA+IGKLMKAGQ  EAEEKK EV+++N++A SAEE   +V    LNT    LL+ +PN
Sbjct:    1 MITPCARVMAVATFATTRCGSFLYGGARFARTG--AKQFAALHSSAQVEQ-TTKDHESLSRSNADDASLDSVLISTNPDLVVDHMKARRMGEDSVEAVHRIGDLMDNRRELIMTKEDALKQRNAMSAQIGKLMKAGQAKEAEEKKNEVQSINKIAGSAEEDLNEVD-SELNT----LLMRLPN 175
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BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Match: A0A7S2UWA1_9STRA (Serine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWA1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.140e-15
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 3 
Query:  216 VQRGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHRVADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVETVNEVADSAEEAFEKV 536
            +QR +   I+ D+  + +N   V  HL ARR GE+  EAV ++  LME R  LI  K+ AL+ RK +SAEIGKLMKAG+ + AEEKK+EVE  N+ AD+AE    +V
Sbjct:   44 IQRIDPQEIAYDSRYVAQNGDSVKAHLLARRAGEEQLEAVDKIGVLMEKRLALIKTKDGALSIRKSVSAEIGKLMKAGEKDAAEEKKKEVEVANQQADAAEAELNEV 150
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BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Match: A0A7S3Z8C3_9EUKA (Serine--tRNA ligase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8C3_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 1.530e-15
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 3 
Query:  219 QRGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHRVADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVETVNEVADSAEEAFEKV 536
            QR +A ++  D  L+  NP++VL+HLKARR  ED   AV  ++ L E RR LI +++ ALN+RK LSAEIGKLMK+G    AEE K +V   N  A  AE    +V
Sbjct:   15 QRVDAQTVDYDLRLLQDNPEVVLEHLKARRAKEDVLAAVGTISKLNERRRQLIKERDAALNKRKTLSAEIGKLMKSGDQAAAEEIKAQVSAANAQAAEAEATLAEV 120
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BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Match: A0A835YK02_9STRA (Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK02_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.940e-13
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 3 
Query:  207 TQFVQRGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHRVADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVETVNEVADSAEEAFEKV 536
            T+   R +AD +SLD  ++ K P +VL +L+ARR G++  E V  +  LME R  LI K++ ALN RK LSA+IGKLMK G+  +    K +V   N  A +A+    +V
Sbjct:   75 TEVHGRLSADGVSLDAQVVAKQPDIVLSNLRARRAGDEAIETVSSIGGLMEQRTGLIRKRDAALNTRKTLSAQIGKLMKEGKEGDVAAIKEQVAMANAEAGAADAELAEV 184
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BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Match: A0A7S3MC65_9STRA (Serine--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MC65_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.030e-8
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 3 
Query:  222 RGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHRVADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVETVNEVADSAEEAFEKVW*LLLNTW 560
            R  A+ +SLDT L+ + P LV+ HL++R+    T + V  V DL   R+ LI     A N RK+LS EIG L+K  + +E  E K +VE  ++ + +A+E    +   + + W
Sbjct:   49 RPPANELSLDTNLLSEQPDLVISHLQSRKVDPLTLDKVFAVKDLQTERKTLIFNSNTAKNVRKVLSKEIGALLKQEKHDEVAELKAKVEAAHQTSSAADEKLTHIEKSIHDIW 161
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LRT5_ECTSI3.460e-4655.19Serine--tRNA ligase n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S2UWA1_9STRA1.140e-1548.60Serine--tRNA ligase n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A7S3Z8C3_9EUKA1.530e-1548.11Serine--tRNA ligase n=1 Tax=Lotharella globosa Tax... [more]
A0A835YK02_9STRA3.940e-1341.82Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S3MC65_9STRA2.030e-835.40Serine--tRNA ligase n=1 Tax=Spumella elongata TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1106contigF-serratus_M_contig1106:91583..94298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue3e-39
Seed eggNOG ortholog2880.D8LRT5
KEGG rclassRC00055,RC00523
KEGG koko:K01875
KEGG ReactionR03662,R08218
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004828,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.seryl-tRNA aminoacylation
EggNOG OGsCOG0172@1,KOG2509@2759
Ec32 ortholog descriptionSerine-tRNA ligase, type1
Ec32 orthologEc-08_002360.1
EC6.1.1.11
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons3
Model size714
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1106.991.1prot_F-serratus_M_contig1106.991.1Fucus serratus malepolypeptideF-serratus_M_contig1106 91755..94257 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.6301234-UTR-F-serratus_M_contig1106:91582..917541622928982.6301234-UTR-F-serratus_M_contig1106:91582..91754Fucus serratus maleUTRF-serratus_M_contig1106 91583..91754 -
1690962655.3180335-UTR-F-serratus_M_contig1106:91582..917541690962655.3180335-UTR-F-serratus_M_contig1106:91582..91754Fucus serratus maleUTRF-serratus_M_contig1106 91583..91754 -
1622928982.6732943-UTR-F-serratus_M_contig1106:94257..942981622928982.6732943-UTR-F-serratus_M_contig1106:94257..94298Fucus serratus maleUTRF-serratus_M_contig1106 94258..94298 -
1690962655.3658197-UTR-F-serratus_M_contig1106:94257..942981690962655.3658197-UTR-F-serratus_M_contig1106:94257..94298Fucus serratus maleUTRF-serratus_M_contig1106 94258..94298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.640861-CDS-F-serratus_M_contig1106:91754..918711622928982.640861-CDS-F-serratus_M_contig1106:91754..91871Fucus serratus maleCDSF-serratus_M_contig1106 91755..91871 -
1690962655.3353696-CDS-F-serratus_M_contig1106:91754..918711690962655.3353696-CDS-F-serratus_M_contig1106:91754..91871Fucus serratus maleCDSF-serratus_M_contig1106 91755..91871 -
1622928982.6508117-CDS-F-serratus_M_contig1106:92296..923731622928982.6508117-CDS-F-serratus_M_contig1106:92296..92373Fucus serratus maleCDSF-serratus_M_contig1106 92297..92373 -
1690962655.3473492-CDS-F-serratus_M_contig1106:92296..923731690962655.3473492-CDS-F-serratus_M_contig1106:92296..92373Fucus serratus maleCDSF-serratus_M_contig1106 92297..92373 -
1622928982.6619961-CDS-F-serratus_M_contig1106:93950..942571622928982.6619961-CDS-F-serratus_M_contig1106:93950..94257Fucus serratus maleCDSF-serratus_M_contig1106 93951..94257 -
1690962655.357499-CDS-F-serratus_M_contig1106:93950..942571690962655.357499-CDS-F-serratus_M_contig1106:93950..94257Fucus serratus maleCDSF-serratus_M_contig1106 93951..94257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1106.991.1

>prot_F-serratus_M_contig1106.991.1 ID=prot_F-serratus_M_contig1106.991.1|Name=mRNA_F-serratus_M_contig1106.991.1|organism=Fucus serratus male|type=polypeptide|length=167bp
MITRIARIMAAVAFASTRCCSFIHSASRFVRIGGQAGKHSALHSSSHLEQ
GTTHETQFVQRGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHR
VADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVET
VNEVADSAEEAFEKVW*
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mRNA from alignment at F-serratus_M_contig1106:91583..94298-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1106.991.1 ID=mRNA_F-serratus_M_contig1106.991.1|Name=mRNA_F-serratus_M_contig1106.991.1|organism=Fucus serratus male|type=mRNA|length=2716bp|location=Sequence derived from alignment at F-serratus_M_contig1106:91583..94298- (Fucus serratus male)
AGCAGAGCTTGCGGTTATGGTTTGCAGCGTCAAGCAGTCCCATGATCACA
CGCATCGCTCGCATAATGGCGGCTGTCGCCTTTGCATCGACTCGCTGTTG
TTCCTTCATTCACAGTGCCTCTCGATTTGTACGTATAGGAGGGCAAGCCG
GGAAGCACTCCGCGCTTCATTCGAGTTCGCATCTTGAACAAGGGACTACA
CACGAGACCCAATTTGTGCAACGTGGCAATGCCGATAGCATTTCACTGGA
CACCATACTGATCTATAAGAATCCGCAGCTTGTGCTGGATCACTTGAAAG
CAAGAAGACAGGGAGAAGACACATTTGAAGCTGTGCACAGGGTTGCAGGT
ACAGTCGCCTCGGCTAAACGATTCTAAATTATTAGTACGCCATTATCTTC
TCTTCTACAGTATTGATAGTACACACGAGTACTGTCGTGTAAAATGCTCT
TCATTCAATGTAACTTGAGTGAAATTATCACCAATTTGTAGTATTGTTGT
TGTTGTCTTCACATTAAAAACCGTTCTGACCTGCGCAATAAGTATCAAGA
CCAGTTGACACCATCGCAAACAACAAAAACAAACTGCCGTGCTAATGATT
TATTACGCAGATGGTGTCTGCTACCCTACAACAGAAAACTCTTAACACTT
CCCATACATCTACTGTATCTGATACTTAAGGTATCACATATGTCCACTAC
AGTATTAATACATATGGTTGCAGTACACGTACGTGTAGTGCCTCTAGGAA
AAAAGAGGCGCATACAAATTGGTCACCTGAAAAAGAAGCACCCGTTACGT
CACTATTTTGAGGACCTACTGGCCCTGTGCGGCGGCAGGCTCTCGGCAGT
GAACGCCATCGGTGCGCAATTGCGTGACCCGATAAACTCGGGACCGACCC
AATAGTGTTTGCCGGTATAAATGAAAGAACGCCGTCGCGGAAAGCGGGAG
GGTGAGTAACCACCAGATTCAGCCTGAATGCGGAGAATTTCGCTGTGCAG
CTGGCCACGAGCAGAATTGGCAACCAAACCCAGGTTTATCCATACTCTTC
TGAAAGTGCTGACCATACACAAATGAATCTCATATGACTACAATTATACG
TCATCCTATACCTGGTAATAGTTTACCCCGCATGAAGTAGTTTGCGAAAC
ATTGGATTGATTTACCTGCATGGCGATGAAAATAAGTATACAGTTACGAT
GCGTTTCTCCCCGATATTATACTATTGACTCTATTAAACTAACATTGGGG
AACCCGTTTGAATCCCACGAAGAGTTTTCGTCCTTGCAGCCAATGTTCCC
ATAAAACTTTTTGACATTTTCCCCTCCTACTGGATGGATGCTCAGAAGGT
AAGGTTTGCAGATAGATCCTTTCAGATTTTTCTCTCAAATGCCCACCAGG
TACTGCTGTATTTTTGTTTTGTTGTTATTACATAGTTGTCCCTGTGGAAT
TACAGTAATAAATGTTACAATTGACTCCGATTCACCAATACTTGGACCCG
TTCCCAAACACCTGAATGAACCAGGTGCCACATCCAATATCACGTCACTA
AGTACCAAGTCTATCGTGTGTTTTCCCCTCTGTTATGATGTTCCTTCATG
GCGATTAATATAAGAGTACAACTGTAGTGGAAGATTGGGTTTCTGCCCGA
TATTATACTGTTAGTTGGCCGTATGCAGTATGCTACTAACTTTGGGAAAC
CCGTTTGAATCCCGTTGAGAGTGTTTGTCCTTGCAGCCAATGATCCCATC
TGAACATTTTGGCATTTTTCCCTCCTACTGGATGGATGCTCGGAAGATTT
GGATTCGTTCAGAGTTTTCTCTAAATTCTTGCATTGTCGGCACTCTATCC
GGGCGCTTGGAGAGGAAATACTGCTTGTTAACCTTTTCTTAGTCGTTCGT
TTGCTTCTTGCTGGGGCTTGCCCAGATCTGATGGAATCTAGGCGAGACTT
AATCGGGAAGAAGGAGAAGGCGCTGAATCAACGCAAGATTTTATCCGCTG
AGGCAAGTTTTGCTGCACCCAAGGACTCCTACGCACATACATCATTATGC
ACAAAATATAATAATAGTACCTCGTATTTAGTTGTGTACCTCGCCTCGTA
CCCTGTAATACCGTAGTATTGAACATTCCTTTTTACTGTACGGATGTAGT
CCTGGCCTGCCGCATCGTGGTGAGCAAAAACGTCGTCGTATCCTGTTTTG
GACAATGCTGAATGCAACAACTGGACAGTGAGGGTCTGTAATGCAGTACC
TATGTACTGTTGTTTTGATTTCCTGCGCGTATCGGCTTTTCATTAGTCAA
GATATTTACTTTTTCCATTCCGTTCGTTCATCGGGAGTTGCAAGTCCACA
TCGCCTTGCAATACTTACCCAGACCGATTATGGGCCAACTTAACTAAACC
CTTCGATCGTGGCCGCCTTCGCGGCAGATTGGTAAGCTGATGAAGGCAGG
TCAAGGGAACGAAGCCGAGGAAAAGAAACGAGAGGTTGAAACAGTAAACG
AGGTGGCTGATTCAGCAGAGGAGGCATTCGAAAAGGTTTGGTAGCTACTG
TTGAATACCTGGTACCTAGTACTATTGATACACGTGCCCAATTCCTCAAA
CGTGTCCTCTTCATGTAGAAGTTCCTGAACTCGTTTTTCGGGCAACATAA
CACCCTATGCGCCCCAGGGTCTTAACTGTTTACATCCAAAGTAGTTGCAT
ATAGCTGTCATGAGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1106:91583..94298-

>mRNA_F-serratus_M_contig1106.991.1 ID=mRNA_F-serratus_M_contig1106.991.1|Name=mRNA_F-serratus_M_contig1106.991.1|organism=Fucus serratus male|type=CDS|length=1002bp|location=Sequence derived from alignment at F-serratus_M_contig1106:91583..94298- (Fucus serratus male)
ATGATCACACGCATCGCTCGCATAATGGCGGCTGTCGCCTTTGCATCGAC
TCGCTGTTGTTCCTTCATTCACAGTGCCTCTCGATTTGTACGTATAGGAG
GGCAAGCCGGGAAGCACTCCGCGCTTCATTCGAGTTCGCATCTTGAACAA
GGGACTACACACGAGACCCAATTTGTGCAACGTGGCAATGCCGATAGCAT
TTCACTGGACACCATACTGATCTATAAGAATCCGCAGCTTGTGCTGGATC
ACTTGAAAGCAAGAAGACAGGGAGAAGACACATTTGAAGCTGTGCACAGG
GTTGCAGATGATCACACGCATCGCTCGCATAATGGCGGCTGTCGCCTTTG
CATCGACTCGCTGTTGTTCCTTCATTCACAGTGCCTCTCGATTTGTACGT
ATAGGAGGGCAAGCCGGGAAGCACTCCGCGCTTCATTCGAGTTCGCATCT
TGAACAAGGGACTACACACGAGACCCAATTTGTGCAACGTGGCAATGCCG
ATAGCATTTCACTGGACACCATACTGATCTATAAGAATCCGCAGCTTGTG
CTGGATCACTTGAAAGCAAGAAGACAGGGAGAAGACACATTTGAAGCTGT
GCACAGGGTTGCAGATCTGATGGAATCTAGGCGAGACTTAATCGGGAAGA
AGGAGAAGGCGCTGAATCAACGCAAGATTTTATCCGCTGAGATCTGATGG
AATCTAGGCGAGACTTAATCGGGAAGAAGGAGAAGGCGCTGAATCAACGC
AAGATTTTATCCGCTGAGATTGGTAAGCTGATGAAGGCAGGTCAAGGGAA
CGAAGCCGAGGAAAAGAAACGAGAGGTTGAAACAGTAAACGAGGTGGCTG
ATTCAGCAGAGGAGGCATTCGAAAAGGTTTGGTAGATTGGTAAGCTGATG
AAGGCAGGTCAAGGGAACGAAGCCGAGGAAAAGAAACGAGAGGTTGAAAC
AGTAAACGAGGTGGCTGATTCAGCAGAGGAGGCATTCGAAAAGGTTTGGT
AG
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