prot_F-serratus_M_contig1106.991.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1106.991.1
Unique Nameprot_F-serratus_M_contig1106.991.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length167
Homology
BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Match: D8LRT5_ECTSI (Serine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRT5_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 3.050e-46
Identity = 94/165 (56.97%), Postives = 123/165 (74.55%), Query Frame = 0
Query:    1 MITRIARIMAAVAFASTRCCSFIHSASRFVRIGGQAGKHSALHSSSHLEQGTTHETQFVQRGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHRVADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVETVNEVADSAEEAFEKV 165
            MIT  AR+MA   FA+TRC SF++  +RF R G  A + +ALHSS+ +EQ TT + + + R NAD  SLD++LI  NP LV+DH+KARR GED+ EAVHR+ DLM++RR+LI  KE AL QR  +SA+IGKLMKAGQ  EAEEKK EV+++N++A SAEE   +V
Sbjct:    1 MITPCARVMAVATFATTRCGSFLYGGARFARTG--AKQFAALHSSAQVEQ-TTKDHESLSRSNADDASLDSVLISTNPDLVVDHMKARRMGEDSVEAVHRIGDLMDNRRELIMTKEDALKQRNAMSAQIGKLMKAGQAKEAEEKKNEVQSINKIAGSAEEDLNEV 162          
BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Match: A0A7S2UWA1_9STRA (Serine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWA1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.420e-16
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 0
Query:   59 VQRGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHRVADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVETVNEVADSAE 159
            +QR +   I+ D+  + +N   V  HL ARR GE+  EAV ++  LME R  LI  K+ AL+ RK +SAEIGKLMKAG+ + AEEKK+EVE  N+ AD+AE
Sbjct:   44 IQRIDPQEIAYDSRYVAQNGDSVKAHLLARRAGEEQLEAVDKIGVLMEKRLALIKTKDGALSIRKSVSAEIGKLMKAGEKDAAEEKKKEVEVANQQADAAE 144          
BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Match: A0A7S3Z8C3_9EUKA (Serine--tRNA ligase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8C3_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 5.990e-16
Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = 0
Query:   60 QRGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHRVADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVETVNEVADSAE 159
            QR +A ++  D  L+  NP++VL+HLKARR  ED   AV  ++ L E RR LI +++ ALN+RK LSAEIGKLMK+G    AEE K +V   N  A  AE
Sbjct:   15 QRVDAQTVDYDLRLLQDNPEVVLEHLKARRAKEDVLAAVGTISKLNERRRQLIKERDAALNKRKTLSAEIGKLMKSGDQAAAEEIKAQVSAANAQAAEAE 114          
BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Match: A0A835YK02_9STRA (Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK02_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.210e-13
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = 0
Query:   56 TQFVQRGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHRVADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVETVNEVADSA 158
            T+   R +AD +SLD  ++ K P +VL +L+ARR G++  E V  +  LME R  LI K++ ALN RK LSA+IGKLMK G+  +    K +V   N  A +A
Sbjct:   75 TEVHGRLSADGVSLDAQVVAKQPDIVLSNLRARRAGDEAIETVSSIGGLMEQRTGLIRKRDAALNTRKTLSAQIGKLMKEGKEGDVAAIKEQVAMANAEAGAA 177          
BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Match: A0A7S3MC65_9STRA (Serine--tRNA ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MC65_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.060e-8
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:   61 RGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHRVADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVETVNEVADSAEE 160
            R  A+ +SLDT L+ + P LV+ HL++R+    T + V  V DL   R+ LI     A N RK+LS EIG L+K  + +E  E K +VE  ++ + +A+E
Sbjct:   49 RPPANELSLDTNLLSEQPDLVISHLQSRKVDPLTLDKVFAVKDLQTERKTLIFNSNTAKNVRKVLSKEIGALLKQEKHDEVAELKAKVEAAHQTSSAADE 148          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1106.991.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LRT5_ECTSI3.050e-4656.97Serine--tRNA ligase n=1 Tax=Ectocarpus siliculosus... [more]
A0A7S2UWA1_9STRA4.420e-1650.50Serine--tRNA ligase n=1 Tax=Fibrocapsa japonica Ta... [more]
A0A7S3Z8C3_9EUKA5.990e-1650.00Serine--tRNA ligase n=1 Tax=Lotharella globosa Tax... [more]
A0A835YK02_9STRA1.210e-1343.69Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S3MC65_9STRA1.060e-839.00Serine--tRNA ligase n=1 Tax=Spumella elongata TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 141..161
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..166
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..15
IPR042103Serine-tRNA synthetase, type1, N-terminal domain superfamilyGENE3D1.10.287.40coord: 68..166
e-value: 5.7E-10
score: 41.5
IPR015866Serine-tRNA synthetase, type1, N-terminalPFAMPF02403Seryl_tRNA_Ncoord: 69..164
e-value: 8.0E-11
score: 42.1
IPR010978Class I and II aminoacyl-tRNA synthetase, tRNA-binding armSUPERFAMILY46589tRNA-binding armcoord: 69..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1106contigF-serratus_M_contig1106:91755..94257 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1106.991.1mRNA_F-serratus_M_contig1106.991.1Fucus serratus malemRNAF-serratus_M_contig1106 91583..94298 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1106.991.1 ID=prot_F-serratus_M_contig1106.991.1|Name=mRNA_F-serratus_M_contig1106.991.1|organism=Fucus serratus male|type=polypeptide|length=167bp
MITRIARIMAAVAFASTRCCSFIHSASRFVRIGGQAGKHSALHSSSHLEQ
GTTHETQFVQRGNADSISLDTILIYKNPQLVLDHLKARRQGEDTFEAVHR
VADLMESRRDLIGKKEKALNQRKILSAEIGKLMKAGQGNEAEEKKREVET
VNEVADSAEEAFEKVW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042103SerRS_1_N_sf
IPR015866Ser-tRNA-synth_1_N
IPR010978tRNA-bd_arm