mRNA_F-serratus_M_contig11.933.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig11.933.1
Unique NamemRNA_F-serratus_M_contig11.933.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig11.933.1 vs. uniprot
Match: A0A6H5KR45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR45_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.580e-25
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:   28 RLGCVLHILHIAVTAGMTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANF 207
            RLG VLHILHI++TAG TS FFMGPLGKG W+EW   HVFSLLG+VWYNTSRS+S N NF
Sbjct:   67 RLGYVLHILHISITAGFTSVFFMGPLGKGSWHEWGTSHVFSLLGMVWYNTSRSNSSNTNF 126
[Close]
BLAST of mRNA_F-serratus_M_contig11.933.1 vs. uniprot
Match: A0A6H5KP72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP72_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.840e-20
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   76 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 210
            MTS +FMGPLGKG W+EWERDHVFSLLG+VWY+TSRS+S NANF+
Sbjct:    1 MTSLYFMGPLGKGSWHEWERDHVFSLLGMVWYSTSRSESSNANFQ 45
[Close]
BLAST of mRNA_F-serratus_M_contig11.933.1 vs. uniprot
Match: A0A6H5KSR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.330e-19
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   76 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 210
            MTS  FMGPLGKG W+EWERDHVFSLLG+VWYNTSRS S N NF+
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGNFQ 45
[Close]
BLAST of mRNA_F-serratus_M_contig11.933.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.310e-19
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   76 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 210
            MTS +FMGPLGKG W+EWERDHVFSLLG+VWYNTSRS+S NANF+
Sbjct:    1 MTSVYFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSESSNANFQ 45
[Close]
BLAST of mRNA_F-serratus_M_contig11.933.1 vs. uniprot
Match: A0A6H5L8G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 2.910e-19
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   76 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 210
            MTS +FMGPLGKG W+EWERDHVFSLLG+VWY+TSRS+S NANF+
Sbjct:    1 MTSLYFMGPLGKGSWHEWERDHVFSLLGMVWYSTSRSESSNANFQ 45
[Close]
BLAST of mRNA_F-serratus_M_contig11.933.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 8.680e-19
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:   76 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 210
            MTS  FMGPLGKG W+EWERDH+FSLLG+VWYNTSRS+S NANF+
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHIFSLLGMVWYNTSRSESSNANFQ 45
[Close]
BLAST of mRNA_F-serratus_M_contig11.933.1 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.710e-18
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   76 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 210
            MTS  FMGPLGKG W+EWERDHVFSLLG+VWYNTSRS S N  F+
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGKFQ 45
[Close]
BLAST of mRNA_F-serratus_M_contig11.933.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.300e-17
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:   76 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDSCNANFE 210
            MTS  FMGPLGKG W+EWERDHVFSLLG+VWYNTSRS+  NA+F+
Sbjct:    1 MTSALFMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSEPSNASFQ 45
[Close]
BLAST of mRNA_F-serratus_M_contig11.933.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.050e-9
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   76 MTSTFFMGPLGKGPWNEWERDHVFSLLGLVWYNTSRSDS 192
            M   FFMGPLGKG W+EWE +H+ +LL  +WYN SRSDS
Sbjct:    1 MECEFFMGPLGKGSWHEWEDNHLVALLATLWYNISRSDS 39
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KR45_9PHAE1.580e-2576.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP72_9PHAE4.840e-2080.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSR2_9PHAE1.330e-1980.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FIQ1_ECTSI2.310e-1982.22Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5L8G1_9PHAE2.910e-1980.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH75_9PHAE8.680e-1980.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW26_9PHAE3.710e-1877.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JI13_9PHAE1.300e-1777.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN38_9PHAE1.050e-964.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig11contigF-serratus_M_contig11:1429744..1429953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size212
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.2515633-CDS-F-serratus_M_contig11:1429743..14299531622928964.2515633-CDS-F-serratus_M_contig11:1429743..1429953Fucus serratus maleCDSF-serratus_M_contig11 1429744..1429953 +
1690962648.993247-CDS-F-serratus_M_contig11:1429743..14299531690962648.993247-CDS-F-serratus_M_contig11:1429743..1429953Fucus serratus maleCDSF-serratus_M_contig11 1429744..1429953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig11.933.1prot_F-serratus_M_contig11.933.1Fucus serratus malepolypeptideF-serratus_M_contig11 1429744..1429953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig11.933.1

>prot_F-serratus_M_contig11.933.1 ID=prot_F-serratus_M_contig11.933.1|Name=mRNA_F-serratus_M_contig11.933.1|organism=Fucus serratus male|type=polypeptide|length=70bp
LRDRRVYAARLGCVLHILHIAVTAGMTSTFFMGPLGKGPWNEWERDHVFS
LLGLVWYNTSRSDSCNANFE
back to top

mRNA from alignment at F-serratus_M_contig11:1429744..1429953+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig11.933.1 ID=mRNA_F-serratus_M_contig11.933.1|Name=mRNA_F-serratus_M_contig11.933.1|organism=Fucus serratus male|type=mRNA|length=210bp|location=Sequence derived from alignment at F-serratus_M_contig11:1429744..1429953+ (Fucus serratus male)
CTCCGAGATAGAAGGGTCTATGCTGCTCGTCTAGGGTGTGTCCTGCATAT
CCTCCACATCGCTGTTACTGCAGGGATGACCAGCACATTCTTCATGGGCC
CACTCGGCAAGGGCCCGTGGAACGAGTGGGAAAGAGATCACGTGTTCTCC
CTTCTCGGCCTCGTATGGTACAACACGAGCCGCTCCGATTCGTGCAACGC
AAATTTCGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig11:1429744..1429953+

>mRNA_F-serratus_M_contig11.933.1 ID=mRNA_F-serratus_M_contig11.933.1|Name=mRNA_F-serratus_M_contig11.933.1|organism=Fucus serratus male|type=CDS|length=420bp|location=Sequence derived from alignment at F-serratus_M_contig11:1429744..1429953+ (Fucus serratus male)
CTCCGAGATAGAAGGGTCTATGCTGCTCGTCTAGGGTGTGTCCTGCATAT
CCTCCACATCGCTGTTACTGCAGGGATGACCAGCACATTCTTCATGGGCC
CACTCGGCAAGGGCCCGTGGAACGAGTGGGAAAGAGATCACGTGTTCTCC
CTTCTCGGCCTCGTATGGTACAACACGAGCCGCTCCGATTCGTGCAACGC
AAATTTCGAGCTCCGAGATAGAAGGGTCTATGCTGCTCGTCTAGGGTGTG
TCCTGCATATCCTCCACATCGCTGTTACTGCAGGGATGACCAGCACATTC
TTCATGGGCCCACTCGGCAAGGGCCCGTGGAACGAGTGGGAAAGAGATCA
CGTGTTCTCCCTTCTCGGCCTCGTATGGTACAACACGAGCCGCTCCGATT
CGTGCAACGCAAATTTCGAG
back to top