mRNA_F-serratus_M_contig11.929.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig11.929.1
Unique NamemRNA_F-serratus_M_contig11.929.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig11contigF-serratus_M_contig11:1098485..1101666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size304
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig11.929.1prot_F-serratus_M_contig11.929.1Fucus serratus malepolypeptideF-serratus_M_contig11 1098485..1101666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.7319736-CDS-F-serratus_M_contig11:1098484..10985711622928963.7319736-CDS-F-serratus_M_contig11:1098484..1098571Fucus serratus maleCDSF-serratus_M_contig11 1098485..1098571 -
1690962648.7956262-CDS-F-serratus_M_contig11:1098484..10985711690962648.7956262-CDS-F-serratus_M_contig11:1098484..1098571Fucus serratus maleCDSF-serratus_M_contig11 1098485..1098571 -
1622928963.7467625-CDS-F-serratus_M_contig11:1099577..10996791622928963.7467625-CDS-F-serratus_M_contig11:1099577..1099679Fucus serratus maleCDSF-serratus_M_contig11 1099578..1099679 -
1690962648.8056767-CDS-F-serratus_M_contig11:1099577..10996791690962648.8056767-CDS-F-serratus_M_contig11:1099577..1099679Fucus serratus maleCDSF-serratus_M_contig11 1099578..1099679 -
1622928963.7729616-CDS-F-serratus_M_contig11:1100815..11008861622928963.7729616-CDS-F-serratus_M_contig11:1100815..1100886Fucus serratus maleCDSF-serratus_M_contig11 1100816..1100886 -
1690962648.8140037-CDS-F-serratus_M_contig11:1100815..11008861690962648.8140037-CDS-F-serratus_M_contig11:1100815..1100886Fucus serratus maleCDSF-serratus_M_contig11 1100816..1100886 -
1622928963.7876976-CDS-F-serratus_M_contig11:1101623..11016661622928963.7876976-CDS-F-serratus_M_contig11:1101623..1101666Fucus serratus maleCDSF-serratus_M_contig11 1101624..1101666 -
1690962648.8214295-CDS-F-serratus_M_contig11:1101623..11016661690962648.8214295-CDS-F-serratus_M_contig11:1101623..1101666Fucus serratus maleCDSF-serratus_M_contig11 1101624..1101666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig11.929.1

>prot_F-serratus_M_contig11.929.1 ID=prot_F-serratus_M_contig11.929.1|Name=mRNA_F-serratus_M_contig11.929.1|organism=Fucus serratus male|type=polypeptide|length=101bp
IETLTHLVWSSGRQVSAQRAVDAGVNLVDASWVFACQQDSCWAPEEQHYP
KDFIHVPGLQASAVGNKKTAKKVRPPEPVRDQWKDLDDDNFDLCFSSSQR
*
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mRNA from alignment at F-serratus_M_contig11:1098485..1101666-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig11.929.1 ID=mRNA_F-serratus_M_contig11.929.1|Name=mRNA_F-serratus_M_contig11.929.1|organism=Fucus serratus male|type=mRNA|length=3182bp|location=Sequence derived from alignment at F-serratus_M_contig11:1098485..1101666- (Fucus serratus male)
ATAGAAACCCTGACGCACCTCGTATGGAGTAGCGGCCGCCAAGGTGCGCA
CCTTTCTTTTTTTTTTTTTTTTCTCTCTTTTTTACTGTTTTCCCTCCTTT
TTTTGTCCTTCTCTACCCGTGAGCCGGCTCTTTTTTTCATTCTCCGTTTT
CTTCATTTGTTCGTCTTTTTTTTTTTGCGTGATGTTTAACATATAATGAG
TATAAAAAAAGAGAAAGCAAAAAAGACGACCGCTTTTTTTTGCTTTTTTT
TGCTTTTTTTCGGGGGCGGCGGAAAAGAACGTCTTTTTTTGGTTTTGAGC
AGCGCGGGGTTACCTTAGTAAGCCGCGTTCCGTTCCGTGCACAACCCCGG
GGAGGGTTCATTCCCACCGACCATCCCCCTCGAACCTCTCGGCAAAGACT
CCCAAAGGCGGCCACGACAATAATCCTTGCAGGAGGTCGAAGCTTCTGCC
CCTGCGGTTTTCCCGGAAAAATCGGGCGGCGGATATTTTCCATTCCCCTG
TGTAGTCAAAAGTAGGCACCACTTACTGCCGCGGTAGATATATAGTATGC
ACATTACATGCTGTATTTTAGTATGAGGTATAGTATGAATTTCGTTCTGA
CGGCGATAAAGGCAGTGAGTGCAGCGCACACCATGTATGTGTGGCTATCT
ATCTTTGGATCTATTAGGAGTAAGACACCGTGCTTCTGGCCTCTGACGTG
CTCGTTCCTCCCGCGCTTCTGCTGCGTCCGCCCTCGCCGCCTCTCTCGCT
GTGGTCGTGATCGCTATTGCCCTTGAGAAGTCTCGGCGCAGCGGGCTGTG
GATGCCGGCGTGAACCTCGTTGACGCTTCGTGGGTGTTCGCCTGCCAACA
GGTAACTGACTGGTGTCCCGTGCTGTTCGGTAGGGCAACTAATATGTTAA
TAACTGTGTACTATCATAGTATGTACCAAAGCTATCCCGTAGCGGTAGGG
GGTAAGAAACTGTTTTTTTCAATCATATCACCCTTGAACAATGCTCGGGA
GAGACTCGGATGTTTGACTGTCATTCTAAAAAACTTCAGGTACGAATCAA
AAGCCTTGGGTTATTCAGGAAACTGTACCTTTGTCGCGTCTGATCAGAGG
TTTTCGTAATAAGTATCATTGATCCCCCCTTGGGAGGATCAATACGAGTG
GTATAGAATGACTTGGATGACAGGGCCGGATTGCGCGGTTATGCGCAATG
TAATACACACACACACAGTGTCCCCTTTGTCGCGTCTGATCAGAGGTTTT
TGCAATAAGTATCATTGATCCCTCCTTAGGAGGATCAATACGAGTGGCAT
AGAATGACTAGGATGACAGGGCCGGATTGCGCGCTTATGTGCAATTTAAT
AAATACACACACACACACACACACAGTGTCCCCTTTGTCGCGTCTGATCA
GAGGTTTTCGTAATAAGTATCATTGATCCCCCCTTGGGAGGATTAACAAT
GCGAGAGGCATAGAATGACTAGGATGACAGGGTTGGATTGCGCGGTTATG
TGCAAACTAATAAATACGCACGCACACACACACACACACAGCAATTTAAG
AAATACAGTACTCGTACAGTACAACTGAGAATGATTATTAATAGCTCTAC
AGCAGCACGAAGGTTTTTTCTTACATGGTTACAAAAATATTCAAGTACCC
ATTTTTTGTGTATAGTTTCTTTCCGTTGCTGTAATGCACGGTGATAGCGG
AGGGGGGGCGGGTCGCCTACAGTGGACGTGCGCCGCAATGCCTGATGTCT
CCCAACCCAGCGTTGCAATCCCCTGCACGATTTTGGACAACTTTTCTTTT
TCTCTTTTGAACTACTAAAATATACGGTACCGTATGTAGTTTTAGTTCTA
CAGTAATATTTTTTTGATTAGATTTTATTCTTGTATTTTTAATACTTTTC
GCTTTTTTGTCTCGTCTGTAGTAGTGTTTATTTTTCATTTTCTTCCCCTC
TTCCCCCCCCCCCCCCTCCCCGTTTTTTTTTTTTCAGGATTCTTGTTGGG
CGCCGGAAGAGCAGCACTACCCAAAAGATTTCATCCACGTGCCCGGCCTC
CAGGCGTCAGCTGTTGGCAACAAAAAGACGGCAAAAAAGGTTCGTGATCG
TTGTGACACATGAGAGAAAAAGGGAACCGGTAAATACATGAGACGCTACT
GCTGCTTTACACTCGCAGGGGCGTATCTATTGCTTTTTATACCTGTACTG
ATGTACTGTAAAGGTCAGCTGCAGAAATAGTTTTGGACCGGTAAATACAT
GAGACGCTACTGCTGCTCTACACTCGCAGGGGCGTATCTATTGCTTTTTA
TACCTGTACTGATGTACTGTAGAGATCAGCTGCAGAAATAGTTGATGCTT
AGAGATAGGTCACCACCCGACACGCTGTAGAAACTATGATACCAGTAGTA
CCTTTTTATGTCCCAACAACGTGGTGTCCTGGTAGAAGTTACCAGTACCT
TTTTATGTCCAACAGGGTGATGTCTTTGTAGAAACTACCAGTACTCAAAC
AGGGTGGTATTCTTGTAGAAAGTACCAGTACCCTTTTATGTCCAACAGGG
TGGTATTCTTGTAGAAAATACCAGTACCTCTTTACGGAAAAAAGGATAGT
GCCTTTGCAGAAGCTACCAGTACCTTTGAATGTAGGCTGGTACAGGTTAC
AACATACTATTAATAAAAAACGTTACAAAAACAGCTATACAAGCCGCCAT
GCACGGTCAAAAAGTGGCGTTCAATGCCTCGAGCCGAAAACCTCGTGGAA
AAAGTACAATTACTTGATGTTAGAATTGCGAAGAGGCCCCTCTATTGGTC
GATCGTCTTGCCTACCCCTTATCGTACAGTAATGTTTTTCACCTCAGCCA
CCCCCACGCCATCTCACCGGAACGGCGCGTATCGATCGCCGTCGCTATTT
GAGCTTGCCGTACGGCTTACAGCATTTTCTGTTATCCCCGGCCTCTTAAT
CTTCCCAATCTCGCGTGGAAGCCTCTTTCTTTAATGACTGCGGGTTTTGG
TGCCTCTCCTTATCCCCGGCCTCTTATCCTTCCCAATCTTGCGTGGAAAC
CTCTTTTTCAATGACTGTGGGTTTTGGTGCCTCTCCTTACACAAGGTTCG
GCCCCCGGAGCCGGTGCGCGATCAGTGGAAAGACTTGGACGACGATAACT
TCGACCTTTGCTTCTCAAGTTCACAAAGGTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig11:1098485..1101666-

>mRNA_F-serratus_M_contig11.929.1 ID=mRNA_F-serratus_M_contig11.929.1|Name=mRNA_F-serratus_M_contig11.929.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig11:1098485..1101666- (Fucus serratus male)
ATAGAAACCCTGACGCACCTCGTATGGAGTAGCGGCCGCCAAGATAGAAA
CCCTGACGCACCTCGTATGGAGTAGCGGCCGCCAAGTCTCGGCGCAGCGG
GCTGTGGATGCCGGCGTGAACCTCGTTGACGCTTCGTGGGTGTTCGCCTG
CCAACAGTCTCGGCGCAGCGGGCTGTGGATGCCGGCGTGAACCTCGTTGA
CGCTTCGTGGGTGTTCGCCTGCCAACAGGATTCTTGTTGGGCGCCGGAAG
AGCAGCACTACCCAAAAGATTTCATCCACGTGCCCGGCCTCCAGGCGTCA
GCTGTTGGCAACAAAAAGACGGCAAAAAAGGATTCTTGTTGGGCGCCGGA
AGAGCAGCACTACCCAAAAGATTTCATCCACGTGCCCGGCCTCCAGGCGT
CAGCTGTTGGCAACAAAAAGACGGCAAAAAAGGTTCGGCCCCCGGAGCCG
GTGCGCGATCAGTGGAAAGACTTGGACGACGATAACTTCGACCTTTGCTT
CTCAAGTTCACAAAGGTAAGTTCGGCCCCCGGAGCCGGTGCGCGATCAGT
GGAAAGACTTGGACGACGATAACTTCGACCTTTGCTTCTCAAGTTCACAA
AGGTAA
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