mRNA_F-serratus_M_contig11.931.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig11.931.1
Unique NamemRNA_F-serratus_M_contig11.931.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig11.931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig11contigF-serratus_M_contig11:1193589..1193913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.4541826-UTR-F-serratus_M_contig11:1193588..11935921622928960.4541826-UTR-F-serratus_M_contig11:1193588..1193592Fucus serratus maleUTRF-serratus_M_contig11 1193589..1193592 +
1690962647.0055127-UTR-F-serratus_M_contig11:1193588..11935921690962647.0055127-UTR-F-serratus_M_contig11:1193588..1193592Fucus serratus maleUTRF-serratus_M_contig11 1193589..1193592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.4733977-CDS-F-serratus_M_contig11:1193592..11939131622928960.4733977-CDS-F-serratus_M_contig11:1193592..1193913Fucus serratus maleCDSF-serratus_M_contig11 1193593..1193913 +
1690962647.0213745-CDS-F-serratus_M_contig11:1193592..11939131690962647.0213745-CDS-F-serratus_M_contig11:1193592..1193913Fucus serratus maleCDSF-serratus_M_contig11 1193593..1193913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig11.931.1prot_F-serratus_M_contig11.931.1Fucus serratus malepolypeptideF-serratus_M_contig11 1193593..1193913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig11.931.1

>prot_F-serratus_M_contig11.931.1 ID=prot_F-serratus_M_contig11.931.1|Name=mRNA_F-serratus_M_contig11.931.1|organism=Fucus serratus male|type=polypeptide|length=107bp
MWCSFHKSTTHSDETCRTLQQQLGNNGSANCANQGSDYPAVLTASDPPPG
CNIEEQGISFAAVEVPNRAEPPKEESFWPFGPTDEAVASFDTSGFFSGFG
GATSDTG
back to top

mRNA from alignment at F-serratus_M_contig11:1193589..1193913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig11.931.1 ID=mRNA_F-serratus_M_contig11.931.1|Name=mRNA_F-serratus_M_contig11.931.1|organism=Fucus serratus male|type=mRNA|length=325bp|location=Sequence derived from alignment at F-serratus_M_contig11:1193589..1193913+ (Fucus serratus male)
GCCGATGTGGTGCTCGTTCCACAAGTCCACCACGCACAGTGACGAGACAT
GCCGTACGCTACAACAGCAGCTGGGCAACAACGGTAGCGCAAACTGTGCC
AACCAGGGGTCGGACTACCCCGCCGTCCTGACTGCAAGCGATCCTCCTCC
CGGTTGTAATATTGAGGAGCAAGGCATATCGTTCGCTGCAGTAGAAGTGC
CGAACAGGGCCGAACCACCAAAAGAGGAGAGTTTCTGGCCGTTCGGTCCC
ACCGATGAAGCGGTTGCCTCGTTCGACACCAGCGGATTTTTCAGCGGCTT
TGGAGGTGCCACCAGCGACACTGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig11:1193589..1193913+

>mRNA_F-serratus_M_contig11.931.1 ID=mRNA_F-serratus_M_contig11.931.1|Name=mRNA_F-serratus_M_contig11.931.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig11:1193589..1193913+ (Fucus serratus male)
ATGTGGTGCTCGTTCCACAAGTCCACCACGCACAGTGACGAGACATGCCG
TACGCTACAACAGCAGCTGGGCAACAACGGTAGCGCAAACTGTGCCAACC
AGGGGTCGGACTACCCCGCCGTCCTGACTGCAAGCGATCCTCCTCCCGGT
TGTAATATTGAGGAGCAAGGCATATCGTTCGCTGCAGTAGAAGTGCCGAA
CAGGGCCGAACCACCAAAAGAGGAGAGTTTCTGGCCGTTCGGTCCCACCG
ATGAAGCGGTTGCCTCGTTCGACACCAGCGGATTTTTCAGCGGCTTTGGA
GGTGCCACCAGCGACACTGGGATGTGGTGCTCGTTCCACAAGTCCACCAC
GCACAGTGACGAGACATGCCGTACGCTACAACAGCAGCTGGGCAACAACG
GTAGCGCAAACTGTGCCAACCAGGGGTCGGACTACCCCGCCGTCCTGACT
GCAAGCGATCCTCCTCCCGGTTGTAATATTGAGGAGCAAGGCATATCGTT
CGCTGCAGTAGAAGTGCCGAACAGGGCCGAACCACCAAAAGAGGAGAGTT
TCTGGCCGTTCGGTCCCACCGATGAAGCGGTTGCCTCGTTCGACACCAGC
GGATTTTTCAGCGGCTTTGGAGGTGCCACCAGCGACACTGGG
back to top